Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 6.6e-125 450.7 219 100.0
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 2.5e-108 395.6 219 85.8
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 7.8e-86 320.9 219 69.4
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.1e-84 317.0 219 68.5
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.1e-84 317.0 219 68.5
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 8.1e-83 310.8 215 66.5
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.1e-82 310.5 219 66.2
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 4.0e-82 308.5 215 65.1
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 5.3e-82 308.1 215 65.6
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 5.3e-82 308.1 215 66.0
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.5e-81 306.6 215 64.7
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 2.0e-81 306.2 219 64.4
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 2.6e-81 305.8 219 64.4
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 2.6e-81 305.8 215 64.7
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.7e-80 303.1 215 64.2
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 2.9e-80 302.4 215 64.7
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 4.9e-80 301.6 217 64.1
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 4.9e-80 301.6 218 63.3
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 1.1e-79 300.4 218 62.8
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.2e-79 298.9 218 61.5
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 4.2e-79 298.5 215 62.3
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 4.2e-79 298.5 221 64.3
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 5.4e-79 298.1 221 64.7
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.3e-79 297.4 218 61.0
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.2e-78 297.0 215 62.3
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.2e-78 297.0 218 61.9
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 2.1e-78 296.2 218 61.0
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 6.0e-78 294.7 215 61.4
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 7.9e-78 294.3 225 60.0
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.3e-77 293.5 215 62.3
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 1.7e-77 293.1 233 60.5
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 3.0e-77 292.4 218 61.5
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 3.0e-77 292.4 215 60.5
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 5.1e-77 291.6 215 62.3
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 6.6e-77 291.2 216 61.1
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 6.6e-77 291.2 225 60.0
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 8.7e-77 290.8 219 61.6
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 8.7e-77 290.8 215 59.5
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 8.7e-77 290.8 213 62.4
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 1.1e-76 290.4 225 60.0
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.5e-76 290.0 215 60.5
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.5e-76 290.0 215 61.9
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 2.5e-76 289.3 215 62.8
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 2.5e-76 289.3 218 61.5
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 5.6e-76 288.1 218 60.1
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 7.4e-76 287.7 217 60.4
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 7.4e-76 287.7 215 59.5
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.6e-75 286.6 215 59.1
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.6e-75 286.6 252 55.2
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.6e-75 286.6 252 55.2
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.6e-75 286.6 215 61.9
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 2.8e-75 285.8 215 60.5
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 2.8e-75 285.8 211 58.8
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 4.8e-75 285.0 214 63.6
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 6.2e-75 284.6 215 60.9
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 6.2e-75 284.6 214 59.8
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 8.1e-75 284.3 224 59.8
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 1.1e-74 283.9 218 59.2
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.8e-74 283.1 215 58.6
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 1.8e-74 283.1 215 60.0
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.8e-74 283.1 215 60.0
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.8e-74 283.1 215 60.0
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 2.4e-74 282.7 221 60.6
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 9.0e-74 280.8 215 58.6
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.2e-73 280.4 216 60.2
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.5e-73 280.0 243 56.8
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 2.0e-73 279.6 215 59.1
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 3.4e-73 278.9 217 58.5
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.4e-73 278.9 218 59.2
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 5.8e-73 278.1 215 57.7
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.3e-72 276.9 217 58.5
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 2.2e-72 276.2 215 55.8
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 3.8e-72 275.4 219 57.1
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 3.8e-72 275.4 213 59.2
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 6.4e-72 274.6 217 58.1
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.1e-71 273.9 221 58.4
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 4.2e-71 271.9 215 56.3
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 4.2e-71 271.9 217 58.1
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 4.2e-71 271.9 218 58.3
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 7.1e-71 271.2 214 57.5
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 7.1e-71 271.2 246 54.1
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 1.6e-70 270.0 215 55.3
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.1e-70 269.6 217 54.8
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 2.1e-70 269.6 217 54.8
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.1e-70 269.6 217 54.8
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 2.1e-70 269.6 217 55.8
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 3.5e-70 268.9 235 54.9
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 4.6e-70 268.5 210 58.6
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 4.6e-70 268.5 204 60.8
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 7.9e-70 267.7 210 58.1
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 7.9e-70 267.7 215 55.3
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.1e-69 265.0 215 54.4
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.4e-68 261.2 210 58.6
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 9.6e-68 260.8 267 50.2
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 1.6e-67 260.0 215 54.4
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 2.8e-67 259.2 215 54.4
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.4e-66 256.9 215 54.4
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 4.5e-65 251.9 194 58.2
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.9e-64 249.2 206 59.2
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 2.5e-63 246.1 225 47.6
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.6e-62 243.4 217 47.5
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.7e-62 242.7 213 52.1
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.9e-62 241.1 212 51.4
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.5e-60 236.9 219 48.9
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-60 236.9 218 48.2
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 3.7e-59 232.3 214 47.2
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 2.6e-57 226.1 215 49.3
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 5.0e-56 221.9 161 64.0
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 5.0e-56 221.9 155 64.5
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.9e-55 219.9 156 62.8
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.9e-55 219.9 156 62.8
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 4.2e-55 218.8 157 62.4
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 7.9e-54 214.5 168 60.7
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 7.9e-54 214.5 209 48.3
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.0e-53 214.2 187 52.4
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-52 209.9 209 46.9
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 3.3e-52 209.1 143 66.4
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 9.7e-52 207.6 184 50.0
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-51 206.8 215 44.7
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.3e-51 204.9 223 45.3
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 1.4e-50 203.8 144 65.3
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.1e-50 202.6 188 54.3
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 4.1e-50 202.2 219 47.0
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.2e-48 196.4 138 65.9
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.9e-47 193.4 219 40.2
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.6e-46 190.3 171 50.3
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 4.6e-46 188.7 205 44.4
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 6.1e-46 188.3 166 53.0
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 3.9e-45 185.7 157 52.2
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.1e-44 184.1 205 43.9
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 2.0e-44 183.3 218 38.5
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 1.7e-43 180.3 193 44.0
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.7e-43 180.3 161 49.7
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-40 170.6 145 51.7
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.9e-40 169.5 213 40.8
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.9e-39 166.8 131 58.0
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 2.7e-38 162.9 120 60.8
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-38 162.5 153 48.4
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 2.3e-37 159.8 133 54.1
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.1e-34 149.4 122 54.1
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.9e-31 140.2 153 43.8
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 2.5e-31 139.8 120 52.5
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.2e-31 139.4 131 48.9
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.6e-30 137.1 117 54.7
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-30 136.7 134 44.8
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-28 131.0 117 50.4
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 8.5e-24 114.8 101 51.5
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-19 100.9 91 53.8
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.1e-15 87.8 74 51.4
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.1e-15 87.8 56 64.3
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.2e-15 86.3 145 32.4
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.0e-13 81.3 74 44.6
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 5.2e-13 79.0 52 63.5
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 5.7e-12 75.5 68 48.5
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 7.5e-12 75.1 52 57.7
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.4e-10 70.1 64 43.8
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 6.6e-08 62.0 55 54.5
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 6.6e-08 62.0 55 54.5
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.6e-08 61.6 64 45.3
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 1.1e-07 61.2 54 55.6


User provided reference genes

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