Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 0.0e+00 1326.2 697 100.0
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 3.6e-286 988.0 626 76.2
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 2.4e-285 985.3 628 75.2
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 1.3e-280 969.5 629 73.3
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.3e-280 969.5 624 75.0
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 5.6e-279 964.1 624 73.6
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 5.6e-279 964.1 624 73.6
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.4e-277 959.5 631 72.7
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 1.2e-276 956.4 627 72.7
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 2.6e-276 955.3 625 73.4
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 9.9e-276 953.4 624 73.4
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 3.8e-275 951.4 621 73.1
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.4e-274 949.5 646 70.7
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 6.0e-273 944.1 628 71.7
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 7.9e-273 943.7 627 71.9
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 1.7e-272 942.6 626 71.1
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 3.0e-272 941.8 626 70.8
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 5.1e-272 941.0 627 71.8
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 6.6e-272 940.6 626 70.9
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 3.6e-270 934.9 622 71.9
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 1.8e-269 932.6 614 72.3
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 1.8e-269 932.6 629 70.4
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 5.3e-269 931.0 653 68.9
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 1.5e-268 929.5 627 70.8
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 2.6e-268 928.7 620 71.1
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 4.5e-268 927.9 629 71.2
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 2.9e-267 925.2 632 70.4
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 8.4e-267 923.7 630 70.6
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 2.4e-266 922.2 624 71.3
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 9.3e-266 920.2 630 70.2
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 1.6e-265 919.5 627 70.7
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 2.1e-265 919.1 629 70.6
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 1.3e-264 916.4 603 73.5
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 3.9e-264 914.8 625 69.4
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 1.1e-263 913.3 625 70.2
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 1.5e-263 912.9 619 71.4
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 9.6e-263 910.2 625 69.4
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 2.1e-262 909.1 618 70.4
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 3.7e-262 908.3 626 69.2
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 9.0e-261 903.7 633 70.1
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 1.5e-260 902.9 631 68.0
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 4.5e-260 901.4 622 69.8
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 2.2e-259 899.0 627 68.1
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 2.9e-259 898.7 626 69.0
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 6.5e-259 897.5 627 68.3
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 6.5e-259 897.5 627 67.6
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 1.4e-258 896.3 639 67.4
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 1.9e-258 896.0 627 69.1
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 7.1e-258 894.0 624 68.9
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 7.1e-258 894.0 675 65.8
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.6e-257 892.9 628 67.8
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 4.6e-257 891.3 622 68.3
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 4.6e-257 891.3 622 68.8
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 4.6e-257 891.3 626 68.2
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 4.6e-257 891.3 626 68.2
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 4.6e-257 891.3 626 68.2
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 1.8e-256 889.4 627 68.1
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 2.3e-256 889.0 622 68.2
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 5.1e-256 887.9 626 68.1
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 6.7e-256 887.5 638 67.6
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 1.5e-255 886.3 626 68.2
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 1.5e-255 886.3 621 67.8
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 1.9e-255 885.9 626 68.1
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.5e-255 885.6 626 67.7
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 2.5e-255 885.6 626 68.2
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 5.7e-255 884.4 665 64.2
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 9.6e-255 883.6 626 68.1
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 1.3e-254 883.2 619 68.0
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 2.8e-254 882.1 618 68.1
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 3.7e-254 881.7 624 67.0
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 8.2e-254 880.6 628 68.5
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 6.9e-253 877.5 626 67.3
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 2.2e-251 872.5 569 74.2
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 3.8e-251 871.7 613 68.4
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 3.2e-250 868.6 617 67.4
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 7.2e-250 867.5 626 66.5
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 1.2e-249 866.7 625 68.2
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 4.6e-249 864.8 627 65.9
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 4.6e-249 864.8 620 68.2
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 7.9e-249 864.0 627 67.3
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 7.9e-249 864.0 627 67.3
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.3e-248 862.4 629 65.3
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 3.0e-248 862.1 622 68.3
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.1e-247 860.1 622 68.0
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 2.5e-247 859.0 658 64.6
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.6e-246 856.3 630 67.5
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 1.7e-243 846.3 657 64.7
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.9e-243 845.5 680 62.5
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 6.5e-243 844.3 626 64.2
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.9e-242 842.8 627 66.3
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 2.6e-239 832.4 597 67.7
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 1.7e-238 829.7 567 70.7
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 8.2e-238 827.4 644 62.1
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 2.0e-236 822.8 603 67.0
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 3.8e-235 818.5 543 71.5
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 2.4e-229 799.3 593 66.8
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 4.1e-229 798.5 622 63.5
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 7.0e-229 797.7 612 64.4
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 2.6e-228 795.8 626 63.4
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 4.5e-228 795.0 542 71.8
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 5.0e-227 791.6 707 57.7
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.5e-226 789.3 624 62.0
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 1.2e-220 770.4 628 58.6
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 5.0e-219 765.0 624 61.7
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 3.2e-218 762.3 647 57.5
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.1e-213 745.7 620 60.2
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 4.1e-213 745.3 631 58.0
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 1.0e-211 740.7 665 58.2
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.0e-208 730.7 619 57.8
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.7e-207 724.9 625 59.2
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 2.4e-205 719.5 623 58.6
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 3.1e-205 719.2 651 54.5
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.6e-201 705.7 553 63.1
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 6.1e-201 704.9 523 67.1
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 1.0e-187 661.0 536 59.9
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 3.7e-182 642.5 623 53.8
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 5.6e-178 628.6 411 71.5
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 9.5e-178 627.9 622 52.7
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 1.8e-176 623.6 414 71.3
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 1.3e-174 617.5 411 71.0
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.5e-172 609.4 523 58.3
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 1.3e-171 607.4 390 72.8
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 1.2e-169 600.9 415 69.4
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.8e-167 592.0 623 51.4
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.6e-164 583.9 412 67.2
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.1e-160 569.7 407 65.8
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.0e-159 567.0 407 65.8
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 2.0e-159 567.0 441 62.6
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 4.5e-159 565.8 658 47.1
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 4.6e-156 555.8 414 63.8
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 1.4e-144 517.7 718 40.3
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 7.9e-132 475.3 636 40.3
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.0e-131 474.9 412 58.7
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.2e-124 451.4 317 67.8
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 1.6e-124 451.1 662 39.0
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 3.9e-115 419.9 626 36.6
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.7e-105 387.9 318 59.7
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.8e-97 359.8 419 47.7
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 7.5e-90 335.9 209 73.7
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 6.8e-83 312.8 207 72.9
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.3e-81 308.5 184 78.8
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.1e-80 305.4 172 83.1
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 5.4e-80 303.1 190 73.2
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.1e-76 291.2 186 73.1
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 8.0e-76 289.3 186 72.0
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 1.4e-72 278.5 192 67.7
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 5.0e-70 270.0 186 69.4
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 4.6e-63 246.9 155 72.3
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 8.6e-62 242.7 136 79.4
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.6e-55 220.3 167 62.9
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 1.4e-51 208.8 151 64.9
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 9.9e-50 202.6 137 67.2
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.3e-46 192.2 103 81.6
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 1.8e-38 165.2 110 70.0
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 8.7e-38 162.9 84 86.9
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 1.6e-36 158.7 110 68.2
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 4.9e-33 147.1 105 69.5
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 6.7e-30 136.7 115 53.9
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 1.3e-28 132.5 79 75.9
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 8.4e-25 119.8 75 72.0
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 7.1e-24 116.7 129 51.2
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 7.9e-23 113.2 72 72.2
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 3.3e-21 107.8 76 65.8
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 3.7e-20 104.4 73 63.0
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.3e-13 81.3 50 68.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 2.8e-12 78.2 51 68.6
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 3.4e-10 71.2 44 72.7
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 1.3e-09 69.3 44 70.5
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 1.8e-06 58.9 156 26.3
HPP92_010256 Vanilla planifolia HOM05D005091 ORTHO05D006047 5.1e-06 57.4 290 22.8
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 6.7e-06 57.0 151 27.2
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 6.7e-06 57.0 234 26.1
HPP92_010449 Vanilla planifolia HOM05D005091 ORTHO05D006047 6.7e-06 57.0 285 22.5
Manes.12G155700 Manihot esculenta HOM05D005091 ORTHO05D006047 8.8e-06 56.6 283 23.0
vmacro09094 Vaccinium macrocarpon HOM05D004736 ORTHO05D006424 8.8e-06 56.6 70 35.7


User provided reference genes

Program Settings