Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03295 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 6.6e-129 464.2 254 100.0
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 3.5e-45 186.0 225 47.1
CSS0013014 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 2.9e-39 166.4 134 58.2
ECA234G0824 Erigeron canadensis HOM05D003261 ORTHO05D004230 6.4e-39 165.2 133 60.9
Ah.08g212490 Amaranthus hybridus HOM05D003261 ORTHO05D004230 5.4e-38 162.2 134 59.0
ECA234G3111 Erigeron canadensis HOM05D001191 ORTHO05D000979 5.4e-38 162.2 133 57.1
AUR62034658 Chenopodium quinoa HOM05D003261 ORTHO05D004230 1.2e-37 161.0 134 58.2
Rhsim12G0061000 Rhododendron simsii HOM05D003261 ORTHO05D004230 1.6e-37 160.6 132 56.1
AUR62008590 Chenopodium quinoa HOM05D003261 ORTHO05D004230 2.1e-37 160.2 134 57.5
Aqoxy3G03984 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 2.7e-37 159.8 129 61.2
Nitab4.5_0014715g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 3.5e-37 159.5 133 56.4
CDE09G0842 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 7.8e-37 158.3 132 56.1
MD16G1081900 Malus domestica HOM05D003261 ORTHO05D004230 1.3e-36 157.5 135 54.8
A09p49870 Brassica napus HOM05D003261 ORTHO05D004230 1.9e-35 153.7 258 36.8
BraA09t40438Z Brassica rapa HOM05D003261 ORTHO05D004230 1.9e-35 153.7 258 36.8
Gohir.D09G239000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 4.3e-35 152.5 251 41.0
Ca_01925_v3 Cicer arietinum L. HOM05D003261 ORTHO05D004230 7.3e-35 151.8 133 53.4
Nn3g21489 Nelumbo nucifera HOM05D003261 ORTHO05D004230 4.0e-33 146.0 109 61.5
SEGI_14553 Sequoiadendron giganteum HOM05D003261 ORTHO05D004230 2.0e-32 143.7 120 59.2
AT3G16650 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 3.4e-32 142.9 133 52.6
Ciclev10004853m.g Citrus clementina HOM05D003261 ORTHO05D004230 3.4e-32 142.9 106 61.3
AL3G29570 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 4.4e-32 142.5 133 52.6
HanXRQChr15g0490951 Helianthus annuus HOM05D003261 ORTHO05D004230 5.8e-32 142.1 133 55.6
Sc19g0005390 Simmondsia chinensis HOM05D003261 ORTHO05D004230 5.8e-32 142.1 107 60.7
Mapoly0016s0006 Marchantia polymorpha HOM05D003261 ORTHO05D004230 7.6e-32 141.7 118 57.6
TWI09G1311 Tripterygium wilfordii HOM05D003261 ORTHO05D004230 9.9e-32 141.4 109 58.7
arahy.Tifrunner.gnm1.ann1.9TJ054 Arachis hypogaea HOM05D003261 ORTHO05D004230 1.3e-31 141.0 120 54.2
arahy.Tifrunner.gnm1.ann1.JJQ0MC Arachis hypogaea HOM05D003261 ORTHO05D004230 1.3e-31 141.0 120 54.2
FAN07G0399 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.7e-31 140.6 126 50.8
CARHR091900 Cardamine hirsuta HOM05D003261 ORTHO05D004230 8.4e-31 138.3 133 49.6
PSO478G1326 Papaver somniferum HOM05D003261 ORTHO05D004230 8.4e-31 138.3 133 51.1
ATR0796G128 Amborella trichopoda HOM05D003261 ORTHO05D004230 1.1e-30 137.9 119 52.9
MSTRG.20825 Avicennia marina HOM05D003261 ORTHO05D004230 1.1e-30 137.9 108 56.5
CDE08G1027 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 1.4e-30 137.5 105 60.0
Gohir.A09G238100 Gossypium hirsutum HOM05D003261 ORTHO05D004230 1.4e-30 137.5 107 58.9
AagrBONN_evm.TU.Sc2ySwM_228.4942 Anthoceros agrestis HOM05D003261 ORTHO05D004230 4.1e-30 136.0 119 53.8
Aqoxy5G00755 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 7.1e-30 135.2 102 61.8
Lalb_Chr18g0051601 Lupinus albus HOM05D003261 ORTHO05D004230 7.1e-30 135.2 149 45.6
Lalb_Chr15g0083461 Lupinus albus HOM05D003261 ORTHO05D004230 1.2e-29 134.4 107 56.1
Nn4g25790 Nelumbo nucifera HOM05D003261 ORTHO05D004230 1.2e-29 134.4 103 60.2
CiPaw.01G147300 Carya illinoinensis HOM05D003261 ORTHO05D004230 1.6e-29 134.0 106 58.5
Pp3c16_8560 Physcomitrium patens HOM05D003261 ORTHO05D004230 2.1e-29 133.7 120 52.5
TAR623G1368 Trochodendron aralioides HOM05D003261 ORTHO05D004230 3.5e-29 132.9 99 61.6
Glyma.15G149300 Glycine max HOM05D003261 ORTHO05D004230 4.6e-29 132.5 107 54.2
Pp3c5_15520 Physcomitrium patens HOM05D003261 ORTHO05D004230 4.6e-29 132.5 120 51.7
VMungo1309G2776 Vigna mungo HOM05D003261 ORTHO05D004230 4.6e-29 132.5 107 55.1
GSVIVG01035143001 Vitis vinifera HOM05D003261 ORTHO05D004230 6.0e-29 132.1 99 60.6
COL.COLO4_13845 Corchorus olitorius HOM05D003261 ORTHO05D004230 7.8e-29 131.7 99 59.6
CSS0009030 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 1.0e-28 131.3 99 59.6
Phvul.009G249100 Phaseolus vulgaris HOM05D003261 ORTHO05D004230 1.0e-28 131.3 107 54.2
Sabra10G0008000 Salix brachista HOM05D003261 ORTHO05D004230 1.0e-28 131.3 99 61.6
Cpa.g.sc16.189 Carica papaya HOM05D003261 ORTHO05D004230 1.7e-28 130.6 99 59.6
Duzib052G0276 Durio zibethinus HOM05D003261 ORTHO05D004230 2.3e-28 130.2 99 59.6
BcaC09g48619 Brassica carinata HOM05D003261 ORTHO05D004230 3.0e-28 129.8 134 49.3
CiPaw.02G081900 Carya illinoinensis HOM05D003261 ORTHO05D004230 3.0e-28 129.8 102 57.8
Duzib151G0067 Durio zibethinus HOM05D003261 ORTHO05D004230 3.0e-28 129.8 99 58.6
Gohir.A02G049900 Gossypium hirsutum HOM05D003261 ORTHO05D004230 3.0e-28 129.8 99 58.6
Dinv29761 Davidia involucrata HOM05D003261 ORTHO05D004230 3.9e-28 129.4 102 56.9
Gorai.006G261700 Gossypium raimondii HOM05D003261 ORTHO05D004230 3.9e-28 129.4 99 59.6
MD00G1128100 Malus domestica HOM05D003261 ORTHO05D004230 3.9e-28 129.4 99 59.6
Actinidia40288 Actinidia chinensis HOM05D003261 ORTHO05D004230 5.1e-28 129.0 99 57.6
Hma1.2p1_1185F.1_g264960 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 5.1e-28 129.0 99 57.6
Hma1.2p1_1807F.1_g303320 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 5.1e-28 129.0 99 57.6
Lj7A515T86 Lonicera japonica HOM05D003261 ORTHO05D004230 5.1e-28 129.0 97 59.8
Rhsim04G0224200 Rhododendron simsii HOM05D003261 ORTHO05D004230 5.1e-28 129.0 99 58.6
PGSC0003DMG400008918 Solanum tuberosum HOM05D003261 ORTHO05D004230 5.1e-28 129.0 122 52.5
THA.LOC104820293 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 5.1e-28 129.0 97 59.8
vmacro08167 Vaccinium macrocarpon HOM05D003261 ORTHO05D004230 5.1e-28 129.0 99 58.6
Gohir.D02G055000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 6.6e-28 128.6 99 57.6
Gorai.005G060900 Gossypium raimondii HOM05D003261 ORTHO05D004230 6.6e-28 128.6 99 57.6
Potri.010G012800 Populus trichocarpa HOM05D003261 ORTHO05D004230 6.6e-28 128.6 99 58.6
Prupe.1G134100 Prunus persica HOM05D003261 ORTHO05D004230 6.6e-28 128.6 99 58.6
RcHm_v2.0_Chr4g0422851 Rosa chinensis HOM05D003261 ORTHO05D004230 6.6e-28 128.6 99 57.6
Psat1g155040 Pisum sativum HOM05D003261 ORTHO05D004230 8.6e-28 128.3 105 53.3
Cfa002537 Carpinus fangiana HOM05D003261 ORTHO05D004230 1.1e-27 127.9 117 52.1
Atru.chr4.2874 Acer truncatum HOM05D003261 ORTHO05D004230 1.5e-27 127.5 103 57.3
FvH4_4g18400 Fragaria vesca HOM05D003261 ORTHO05D004230 1.5e-27 127.5 99 56.6
FAN07G1152 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.5e-27 127.5 99 56.6
FAN12G0468 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.5e-27 127.5 99 56.6
FAN12G4234 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.5e-27 127.5 99 56.6
FAN17G0608 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.5e-27 127.5 99 56.6
HanXRQChr17g0561551 Helianthus annuus HOM05D003261 ORTHO05D004230 1.5e-27 127.5 99 58.6
Manes.03G196900 Manihot esculenta HOM05D003261 ORTHO05D004230 1.5e-27 127.5 99 56.6
SalBow3G0655 Salvia bowleyana HOM05D003261 ORTHO05D004230 1.5e-27 127.5 103 55.3
Actinidia19581 Actinidia chinensis HOM05D003261 ORTHO05D004230 1.9e-27 127.1 99 57.6
unitig_22.g5357 Utricularia gibba HOM05D003261 ORTHO05D004230 1.9e-27 127.1 99 56.6
Thecc.04G286600 Theobroma cacao HOM05D003261 ORTHO05D004230 2.5e-27 126.7 96 60.4
Lj6g0023887 Lotus japonicus HOM05D003261 ORTHO05D004230 3.3e-27 126.3 102 53.9
PSO170G4560 Papaver somniferum HOM05D003261 ORTHO05D004230 3.3e-27 126.3 97 59.8
PSO407G0331 Papaver somniferum HOM05D003261 ORTHO05D004230 3.3e-27 126.3 97 59.8
Migut.B01741 Erythranthe guttata HOM05D003261 ORTHO05D004230 4.3e-27 125.9 101 54.5
BolC1t04740H Brassica oleracea HOM05D003261 ORTHO05D004230 5.6e-27 125.6 109 53.2
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 5.6e-27 125.6 99 57.6
Os03g0339100 Oryza sativa ssp. japonica HOM05D003261 ORTHO05D004230 5.6e-27 125.6 99 58.6
Prupe.6G318200 Prunus persica HOM05D003261 ORTHO05D004230 5.6e-27 125.6 107 54.2
PGR004G2696 Punica granatum HOM05D003261 ORTHO05D004230 7.3e-27 125.2 94 61.7
Zm00001eb051300 Zea mays HOM05D003261 ORTHO05D004230 9.6e-27 124.8 99 58.6
DCAR_008606 Daucus carota HOM05D003261 ORTHO05D004230 1.2e-26 124.4 99 55.6
Nitab4.5_0003111g0030 Nicotiana tabacum HOM05D003261 ORTHO05D004230 1.2e-26 124.4 99 53.5
Peaxi162Scf00056g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 1.2e-26 124.4 99 53.5
Sopen01g038290 Solanum pennellii HOM05D003261 ORTHO05D004230 1.2e-26 124.4 99 53.5
Medtr2g436510 Medicago truncatula HOM05D003261 ORTHO05D004230 1.6e-26 124.0 99 54.5
Solyc01g094480.4 Solanum lycopersicum HOM05D003261 ORTHO05D004230 1.6e-26 124.0 99 52.5
TPR.G22357 Trifolium pratense HOM05D003261 ORTHO05D004230 1.6e-26 124.0 102 52.9
Haze_01185 Corylus avellana HOM05D003261 ORTHO05D004230 2.1e-26 123.6 94 58.5
MBI16_g12924_MAGBIO Magnolia biondii HOM05D003261 ORTHO05D004230 2.1e-26 123.6 95 57.9
Eucgr.H03935 Eucalyptus grandis HOM05D003261 ORTHO05D004230 2.8e-26 123.2 96 58.3
CsaV3_6G023930 Cucumis sativus L. HOM05D003261 ORTHO05D004230 3.6e-26 122.9 95 57.9
QL06p009632 Quercus lobata HOM05D003261 ORTHO05D004230 3.6e-26 122.9 95 57.9
Glyma.09G043800 Glycine max HOM05D003261 ORTHO05D004230 4.7e-26 122.5 102 52.0
unitig_8.g3803 Utricularia gibba HOM05D003261 ORTHO05D004230 4.7e-26 122.5 137 43.8
HPP92_023226 Vanilla planifolia HOM05D003261 ORTHO05D004230 4.7e-26 122.5 99 58.6
Carub.0007s2576 Capsella rubella HOM05D003261 ORTHO05D004230 6.2e-26 122.1 99 55.6
ClCG06G005050 Citrullus lanatus HOM05D003261 ORTHO05D004230 6.2e-26 122.1 95 57.9
PRCOL_00003913 Prasinoderma coloniale HOM05D003261 ORTHO05D004230 8.1e-26 121.7 126 44.4
Cre10.g446900 Chlamydomonas reinhardtii HOM05D003261 ORTHO05D004230 1.1e-25 121.3 122 46.7
MELO3C021320.2 Cucumis melo HOM05D003261 ORTHO05D004230 1.1e-25 121.3 94 58.5
MD16G1167100 Malus domestica HOM05D003261 ORTHO05D004230 1.1e-25 121.3 93 59.1
AL7G39370 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 1.4e-25 120.9 99 55.6
Peaxi162Scf00089g00028 Petunia axillaris HOM05D003261 ORTHO05D004230 2.4e-25 120.2 102 52.9
Sed0025564 Sechium edule HOM05D003261 ORTHO05D004230 2.4e-25 120.2 97 54.6
Carub.0003s1638 Capsella rubella HOM05D003261 ORTHO05D004230 3.1e-25 119.8 99 56.6
THA.LOC104821781 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 3.1e-25 119.8 96 56.2
CBR_g46442 Chara braunii HOM05D003261 ORTHO05D004230 4.0e-25 119.4 124 47.6
SMO240G0024 Selaginella moellendorffii HOM05D003261 ORTHO05D004230 4.0e-25 119.4 112 47.3
Aa31LG8G3770 Aethionema arabicum HOM05D003261 ORTHO05D004230 5.2e-25 119.0 94 59.6
Sp3g14940 Schrenkiella parvula HOM05D003261 ORTHO05D004230 5.2e-25 119.0 99 55.6
A01p37650 Brassica napus HOM05D003261 ORTHO05D004230 6.9e-25 118.6 99 55.6
C01p47680 Brassica napus HOM05D003261 ORTHO05D004230 6.9e-25 118.6 99 55.6
BraA01t03826Z Brassica rapa HOM05D003261 ORTHO05D004230 6.9e-25 118.6 99 55.6
DCAR_030163 Daucus carota HOM05D003261 ORTHO05D004230 6.9e-25 118.6 113 49.6
COL.COLO4_06938 Corchorus olitorius HOM05D003261 ORTHO05D004230 1.2e-24 117.9 133 48.9
Aa31LG10G6240 Aethionema arabicum HOM05D003261 ORTHO05D004230 2.6e-24 116.7 94 57.4
Nitab4.5_0001251g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 4.4e-24 115.9 125 42.4
AT4G15900 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 5.8e-24 115.5 94 56.4
BcaC06g33437 Brassica carinata HOM05D003261 ORTHO05D004230 5.8e-24 115.5 94 56.4
BcaNung00239 Brassica carinata HOM05D003261 ORTHO05D004230 5.8e-24 115.5 94 56.4
A03p49450 Brassica napus HOM05D003261 ORTHO05D004230 5.8e-24 115.5 94 56.4
C07p47500 Brassica napus HOM05D003261 ORTHO05D004230 5.8e-24 115.5 94 56.4
BolC7t45277H Brassica oleracea HOM05D003261 ORTHO05D004230 5.8e-24 115.5 94 56.4
BraA03t14046Z Brassica rapa HOM05D003261 ORTHO05D004230 5.8e-24 115.5 94 56.4
CANSAT78G0131 Cannabis sativa HOM05D003261 ORTHO05D004230 5.8e-24 115.5 90 60.0
CARHR290440 Cardamine hirsuta HOM05D003261 ORTHO05D004230 5.8e-24 115.5 94 56.4
Thhalv10025068m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 5.8e-24 115.5 94 56.4
BcaC06g32973 Brassica carinata HOM05D003261 ORTHO05D004230 7.6e-24 115.2 94 56.4
Sp7g14350 Schrenkiella parvula HOM05D003261 ORTHO05D004230 9.9e-24 114.8 94 55.3
EL10Ac7g17420 Beta vulgaris HOM05D003261 ORTHO05D004230 4.9e-23 112.5 83 62.7
Thhalv10022263m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 1.9e-22 110.5 94 55.3
DCAR_030161 Daucus carota HOM05D003261 ORTHO05D004230 2.4e-22 110.2 105 48.6
DCAR_030165 Daucus carota HOM05D003261 ORTHO05D004230 1.6e-21 107.5 101 47.5
Aqoxy7G03551 Aquilegia oxysepala HOM05D003261 ORTHO05D014021 4.6e-21 105.9 131 45.0
DCAR_003343 Daucus carota HOM05D003261 ORTHO05D004230 1.3e-20 104.4 105 48.6
Nitab4.5_0002089g0060 Nicotiana tabacum HOM05D003261 ORTHO05D014021 1.3e-20 104.4 88 55.7
TPR.G39909 Trifolium pratense HOM05D003261 ORTHO05D004230 1.3e-20 104.4 83 55.4
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 3.0e-20 103.2 116 48.3
Aqoxy3G03983 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 3.9e-20 102.8 120 48.3
MCO14G267 Micromonas commoda HOM05D003261 ORTHO05D004230 1.1e-19 101.3 117 42.7
TAR365G1013 Trochodendron aralioides HOM05D003261 ORTHO05D004230 1.5e-19 100.9 133 44.4
Rhsim06G0116500 Rhododendron simsii HOM05D003261 ORTHO05D004230 2.5e-19 100.1 262 40.5
Cc02_g37840 Coffea canephora HOM05D003261 ORTHO05D004230 4.3e-19 99.4 73 57.5
C08p32230 Brassica napus HOM05D000211 ORTHO05D041739 1.6e-18 97.4 84 54.8
FvH4_4g23450 Fragaria vesca HOM05D003261 ORTHO05D004230 1.6e-18 97.4 88 50.0
FAN12G3743 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.6e-18 97.4 88 50.0
Medtr2g019400 Medicago truncatula HOM05D003261 ORTHO05D004230 1.1e-17 94.7 83 50.6
BcaC07g40009 Brassica carinata HOM05D000211 ORTHO05D004230 2.4e-17 93.6 86 51.2
SGA_v2.0_scaffold95G28842 Striga asiatica HOM05D003261 ORTHO05D004230 5.3e-17 92.4 109 42.2
Peaxi162Scf00409g00039 Petunia axillaris HOM05D003261 ORTHO05D004230 6.9e-17 92.0 133 42.1
Sopen09g005330 Solanum pennellii HOM05D003261 ORTHO05D014021 1.5e-16 90.9 129 40.3
MD05G1262800 Malus domestica HOM05D003261 ORTHO05D004230 1.7e-15 87.4 80 51.2
RcHm_v2.0_Chr4g0429821 Rosa chinensis HOM05D003261 ORTHO05D004230 1.7e-15 87.4 74 55.4
BcaC09g50284 Brassica carinata HOM05D003261 ORTHO05D004230 1.4e-14 84.3 126 42.1
C01p26990 Brassica napus HOM05D003261 ORTHO05D004230 1.4e-14 84.3 126 42.1
BolC1t02648H Brassica oleracea HOM05D003261 ORTHO05D004230 1.4e-14 84.3 126 42.1
Haze_27215 Corylus avellana HOM05D003261 ORTHO05D004230 3.2e-14 83.2 120 34.2
Nitab4.5_0000244g0390 Nicotiana tabacum HOM05D003261 ORTHO05D004230 1.2e-13 81.3 69 52.2
CiPaw.14G132800 Carya illinoinensis HOM05D003261 ORTHO05D004230 6.0e-13 79.0 81 44.4
CsaV3_6G046580 Cucumis sativus L. HOM05D003261 ORTHO05D004230 2.3e-12 77.0 71 47.9
CiPaw.06G074500 Carya illinoinensis HOM05D003261 ORTHO05D004230 3.9e-12 76.3 81 43.2
Peaxi162Scf00858g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 1.5e-11 74.3 66 47.0
MELO3C007855.2 Cucumis melo HOM05D003261 ORTHO05D004230 1.4e-09 67.8 61 49.2
Medtr2g436500 Medicago truncatula HOM05D003261 ORTHO05D004230 3.1e-09 66.6 45 57.8
AL6G53110 Arabidopsis lyrata HOM05D000915 ORTHO05D001662 6.9e-09 65.5 182 44.0


User provided reference genes

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