Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1622.4 792 100.0
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1368.2 808 83.0
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1286.6 801 79.2
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1272.7 814 77.3
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1271.9 814 77.3
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1268.1 812 77.1
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1266.5 811 77.2
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1264.6 811 77.4
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1258.0 812 76.0
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1256.5 812 76.1
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1254.6 812 76.2
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1250.0 813 75.4
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1247.6 811 76.3
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1245.7 812 75.5
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1245.7 811 75.2
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1244.2 813 75.4
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1243.4 812 75.0
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1243.4 808 75.7
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1241.9 815 75.6
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1236.9 812 74.8
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1234.6 816 74.8
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1233.8 812 74.4
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1233.8 805 75.2
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1233.8 816 74.4
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1233.4 807 75.3
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1231.9 811 74.1
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1230.7 815 74.5
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1229.2 812 74.5
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1227.6 797 74.8
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1227.2 811 73.4
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1226.8 812 74.3
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1224.9 812 74.8
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1224.2 814 73.6
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1224.2 812 75.0
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1223.4 812 74.9
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1223.0 814 73.6
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1221.1 811 74.4
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1221.1 811 73.6
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1220.3 811 73.4
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1220.3 812 74.8
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1218.8 812 74.4
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1218.4 812 73.2
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1218.0 814 73.7
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1215.3 813 74.7
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1214.5 812 73.5
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1211.8 809 73.7
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1211.1 800 74.5
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1208.7 822 73.0
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1205.3 811 73.7
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1200.3 817 71.7
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1199.5 806 73.4
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1197.2 808 72.6
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1193.7 891 67.3
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1191.0 808 72.2
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1191.0 815 72.6
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1190.6 805 72.2
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1190.6 805 72.2
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1188.7 805 72.7
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1187.6 805 71.9
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1187.6 805 72.7
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1186.8 805 72.3
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1186.8 806 72.1
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1184.9 806 72.6
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1184.1 806 71.7
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1183.3 801 73.2
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1182.2 806 72.6
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1181.8 795 72.3
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1181.4 805 71.4
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1179.5 805 71.7
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1176.8 803 72.0
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1175.2 799 72.5
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1174.8 803 71.9
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1174.5 863 67.6
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1172.5 806 71.3
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1172.5 814 71.9
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1171.0 812 71.6
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1169.5 799 71.3
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1165.6 801 71.4
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1165.2 810 70.6
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1164.4 798 71.2
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1163.3 800 71.6
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1162.9 805 70.7
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1162.9 832 71.3
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1161.7 797 71.0
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1161.4 808 70.9
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1160.6 803 70.4
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1160.6 810 70.0
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1159.1 823 70.4
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1157.5 808 70.7
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1157.1 797 70.9
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1156.4 800 70.2
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1156.0 801 71.5
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1152.9 853 67.6
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1140.9 808 70.2
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1132.9 871 65.1
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1131.7 808 69.1
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1129.4 807 68.2
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1120.9 793 70.4
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1114.4 810 67.7
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1103.6 799 69.6
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1102.4 814 68.8
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1099.0 764 71.3
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1087.0 810 68.8
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 2.7e-311 1071.6 964 60.1
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 7.0e-310 1067.0 915 61.1
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 6.5e-308 1060.4 772 68.4
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 3.0e-305 1051.6 967 58.5
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.3e-303 1046.2 806 65.6
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 8.3e-303 1043.5 818 64.2
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 2.5e-299 1031.9 823 63.4
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 6.0e-285 984.2 809 63.0
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 2.0e-280 969.1 790 61.6
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 3.4e-280 968.4 816 62.6
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 3.5e-269 931.8 605 76.0
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 9.0e-257 890.6 804 57.0
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 4.5e-232 808.5 784 56.9
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 2.1e-173 613.6 849 41.9
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 3.5e-168 596.3 381 76.4
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 6.4e-162 575.5 831 40.3
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.2e-149 534.6 794 42.3
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 1.8e-140 504.2 935 34.1
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 2.1e-136 490.7 842 36.6
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 5.9e-115 419.5 404 55.2
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 3.0e-111 407.1 318 63.5
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 3.0e-103 380.6 334 60.8
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 3.3e-102 377.1 264 68.2
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 7.7e-75 286.2 237 62.4
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 3.1e-68 264.2 188 68.6
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 8.9e-63 246.1 171 69.6
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 5.0e-50 203.8 304 42.4
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.2e-43 182.6 140 67.9
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 5.8e-38 163.7 90 81.1
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 2.2e-37 161.8 192 50.0
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 4.6e-35 154.1 102 74.5
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 3.0e-34 151.4 261 41.8
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 2.8e-32 144.8 96 68.8
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 1.7e-29 135.6 138 49.3
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.1e-28 132.9 107 62.6
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 1.9e-28 132.1 170 45.9
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 7.8e-27 126.7 120 55.8
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.3e-25 121.3 91 67.0
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 5.6e-25 120.6 113 49.6
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 9.0e-23 113.2 120 54.2
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.5e-22 112.5 192 42.2
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 2.6e-22 111.7 262 29.8
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 1.1e-20 106.3 172 38.4
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 5.4e-20 104.0 69 73.9
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 2.1e-19 102.1 59 83.1
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 2.3e-18 98.6 68 75.0
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 3.3e-17 94.7 104 51.9
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 9.6e-17 93.2 43 95.3
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.3e-16 92.8 153 43.8
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 3.7e-16 91.3 72 68.1
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 5.3e-15 87.4 50 78.0
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 1.4e-12 79.3 422 22.5
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 8.7e-10 70.1 59 50.8
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 8.7e-10 70.1 63 50.8
BolC4t27959H Brassica oleracea HOM05D001091 ORTHO05D001020 4.3e-09 67.8 289 25.6
BcaB06g28879 Brassica carinata HOM05D001091 ORTHO05D001020 7.4e-09 67.0 268 26.1
C04p64820 Brassica napus HOM05D001091 ORTHO05D001020 9.6e-09 66.6 289 26.0
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 1.6e-08 65.9 305 25.6
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 2.1e-08 65.5 406 21.7
A04p27290 Brassica napus HOM05D001091 ORTHO05D001020 4.8e-08 64.3 289 25.6
CsaV3_4G036430 Cucumis sativus L. HOM05D000344 ORTHO05D003478 4.8e-08 64.3 423 22.0
GSVIVG01035988001 Vitis vinifera HOM05D000344 ORTHO05D003478 1.4e-07 62.8 397 21.2
BraA04t18227Z Brassica rapa HOM05D001091 ORTHO05D001020 3.1e-07 61.6 289 25.3
BraA04t18228Z Brassica rapa HOM05D001091 ORTHO05D001020 3.1e-07 61.6 289 25.3
VMungo0647G2284 Vigna mungo HOM05D000344 ORTHO05D003478 1.5e-06 59.3 287 24.7
Gohir.A10G193900 Gossypium hirsutum HOM05D001091 ORTHO05D001020 2.0e-06 58.9 194 28.9
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 3.4e-06 58.2 131 32.1
Pp3c24_6160 Physcomitrium patens HOM05D000344 ORTHO05D020415 3.4e-06 58.2 196 28.1
C04p64810 Brassica napus HOM05D001091 ORTHO05D001020 7.6e-06 57.0 298 22.8
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 1.0e-05 56.6 68 48.5


User provided reference genes

Program Settings