Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 1.1e-306 1055.8 539 100.0
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 4.9e-230 801.2 515 79.6
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 1.2e-228 796.6 495 81.6
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 4.4e-223 778.1 497 80.7
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 1.7e-222 776.2 492 80.1
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 2.9e-222 775.4 497 80.5
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 1.1e-221 773.5 487 80.1
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.9e-221 772.7 489 79.1
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 7.8e-220 767.3 494 80.2
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 3.9e-219 765.0 511 75.3
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 1.8e-216 756.1 497 76.5
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 3.1e-216 755.4 513 75.2
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 1.7e-214 749.6 494 76.5
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 2.9e-214 748.8 487 76.6
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 5.4e-213 744.6 518 73.7
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 9.2e-213 743.8 490 76.3
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 2.7e-212 742.3 516 74.4
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 7.8e-212 740.7 511 74.0
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 7.8e-212 740.7 513 74.9
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 1.3e-211 740.0 495 75.4
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 2.3e-211 739.2 489 75.3
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 5.1e-211 738.0 515 74.8
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 8.6e-211 737.3 489 76.3
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 4.3e-210 734.9 529 71.1
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 5.6e-210 734.6 489 74.6
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 7.3e-210 734.2 495 73.9
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 1.6e-209 733.0 501 74.3
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.8e-209 732.3 529 70.7
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.6e-209 731.9 492 74.2
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 4.7e-209 731.5 513 71.9
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 4.7e-209 731.5 517 73.3
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 8.1e-209 730.7 529 70.7
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.8e-208 729.6 511 73.0
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 2.4e-208 729.2 492 76.4
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 8.9e-208 727.2 498 74.5
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.2e-207 726.9 513 71.7
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.2e-207 726.9 492 74.0
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 5.8e-207 724.5 487 75.8
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 1.7e-206 723.0 489 74.4
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 2.2e-206 722.6 492 73.4
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 3.8e-206 721.8 514 70.6
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 3.8e-206 721.8 487 75.6
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 1.1e-205 720.3 489 75.3
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 1.1e-205 720.3 521 71.6
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 1.1e-205 720.3 489 73.2
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 1.1e-205 720.3 493 74.4
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 1.4e-205 719.9 515 72.2
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 2.4e-205 719.2 515 72.0
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 2.4e-205 719.2 538 69.9
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 3.2e-205 718.8 514 72.0
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 7.1e-205 717.6 482 76.1
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 7.1e-205 717.6 522 70.1
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 7.1e-205 717.6 489 72.4
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 3.5e-204 715.3 522 71.5
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 6.0e-204 714.5 515 70.9
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 6.0e-204 714.5 503 72.6
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 2.3e-203 712.6 489 72.8
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 3.0e-203 712.2 493 72.4
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 3.0e-203 712.2 510 71.8
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 3.0e-203 712.2 534 69.9
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 3.0e-203 712.2 502 70.9
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.5e-202 709.9 466 77.7
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 1.9e-202 709.5 489 72.2
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 3.3e-202 708.8 503 72.0
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 2.8e-201 705.7 492 73.0
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 4.7e-201 704.9 489 71.8
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 4.7e-201 704.9 511 69.9
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 1.1e-200 703.7 481 74.2
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 5.2e-200 701.4 510 70.8
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 9.0e-200 700.7 494 73.9
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 1.5e-199 699.9 488 71.1
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 3.4e-199 698.7 497 72.4
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 5.8e-199 698.0 489 72.2
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 2.9e-198 695.7 502 71.3
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 3.2e-197 692.2 491 71.5
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 7.1e-197 691.0 491 72.1
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 1.2e-196 690.3 487 71.3
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 4.6e-196 688.3 491 71.1
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 3.0e-195 685.6 505 70.1
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 3.0e-195 685.6 492 71.5
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 3.0e-195 685.6 528 68.0
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 5.1e-195 684.9 477 73.2
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 8.7e-195 684.1 491 70.9
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 1.9e-194 682.9 492 71.3
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 2.5e-194 682.6 492 71.1
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 5.6e-194 681.4 526 66.3
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 1.6e-193 679.9 493 71.2
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 2.1e-193 679.5 491 70.7
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 2.8e-193 679.1 491 69.5
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 2.8e-193 679.1 491 70.5
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 4.8e-193 678.3 508 69.3
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 4.2e-189 665.2 498 67.5
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 3.9e-187 658.7 552 64.5
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 5.8e-183 644.8 516 65.9
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 9.9e-183 644.0 439 73.8
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 1.1e-176 624.0 526 62.9
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.4e-173 613.6 482 66.4
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 2.7e-172 609.4 616 55.5
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 2.0e-167 593.2 496 60.1
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.2e-164 583.9 465 66.5
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 6.3e-161 571.6 384 72.9
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 2.4e-160 569.7 494 59.7
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 1.2e-159 567.4 493 58.8
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 8.8e-155 551.2 504 58.7
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.9e-141 506.9 319 79.9
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.0e-131 473.0 354 71.5
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 5.0e-126 455.7 414 57.0
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 6.0e-111 405.6 562 43.4
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 4.6e-103 379.4 260 71.5
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 3.9e-102 376.3 264 72.0
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 3.6e-76 290.0 370 47.8
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 3.1e-75 287.0 280 55.0
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 1.5e-66 258.1 174 72.4
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.0e-65 255.4 202 63.4
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.5e-64 249.6 460 38.9
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 5.5e-56 223.0 153 73.9
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 1.5e-53 214.9 148 72.3
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 3.3e-53 213.8 231 49.8
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.5e-50 204.9 137 69.3
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 7.2e-48 196.1 150 70.7
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 2.7e-47 194.1 124 82.3
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 1.2e-39 168.7 125 67.2
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 2.1e-39 167.9 145 60.7
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.8e-38 162.5 156 56.4
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 7.4e-37 159.5 97 80.4
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 4.5e-34 150.2 100 79.0
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 4.5e-34 150.2 100 79.0
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 8.5e-33 146.0 171 48.5
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 2.5e-32 144.4 198 43.4
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 4.0e-30 137.1 123 63.4
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 9.7e-29 132.5 302 35.1
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 2.5e-24 117.9 119 53.8
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 7.7e-18 96.3 62 75.8
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.0e-17 95.9 76 68.4
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 9.4e-16 89.4 138 41.3
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.8e-14 82.8 63 74.6
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 2.8e-12 77.8 202 27.7
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 6.3e-12 76.6 87 49.4
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 5.0e-09 67.0 57 61.4


User provided reference genes

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