Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2879.0 1470 100.0
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2801.9 1470 97.3
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2313.5 1485 78.7
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2307.7 1486 78.9
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2291.2 1488 78.1
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2285.4 1485 77.6
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2284.6 1485 77.6
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2283.1 1487 77.3
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2274.2 1485 77.6
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2273.8 1485 78.0
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2270.4 1489 78.0
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2261.5 1487 76.8
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2251.9 1484 77.0
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2251.9 1486 76.2
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2246.9 1437 79.4
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2245.3 1488 76.7
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2244.5 1490 76.8
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2239.2 1485 76.7
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2237.6 1484 76.4
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2231.4 1479 75.9
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2226.4 1481 76.5
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2213.3 1483 75.7
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2213.0 1483 75.5
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2209.9 1483 75.4
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2207.2 1478 75.7
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2203.7 1483 75.3
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2202.6 1482 74.9
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2202.6 1483 75.4
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2201.8 1484 75.5
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2198.7 1483 74.6
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2188.7 1483 74.8
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2187.1 1485 74.1
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2186.8 1484 74.9
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2186.4 1482 74.4
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2186.0 1541 72.8
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2184.8 1485 73.9
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2184.1 1485 73.9
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2183.3 1483 74.2
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2181.4 1519 73.1
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2181.0 1484 75.2
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2180.2 1485 73.9
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2177.9 1485 73.8
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2177.5 1485 73.6
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2171.4 1483 74.0
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2168.7 1485 74.1
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2159.0 1487 74.0
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2157.5 1528 72.6
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2154.4 1472 73.4
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2152.5 1481 73.9
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2151.3 1487 73.5
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2138.2 1556 70.9
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2138.2 1480 73.6
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2137.8 1484 73.3
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2134.8 1488 74.5
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2129.4 1488 74.3
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2129.4 1480 73.2
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2120.9 1480 72.4
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2118.2 1483 72.6
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2111.6 1474 72.9
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2102.8 1486 71.6
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2096.6 1480 71.4
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2096.2 1486 73.1
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2096.2 1485 71.5
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2088.9 1484 71.6
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2087.8 1534 70.2
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2079.7 1486 70.8
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2057.3 1481 71.3
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2056.6 1485 71.6
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2053.1 1476 70.9
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2051.6 1484 71.0
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2051.2 1484 71.3
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2044.2 1481 71.0
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2040.8 1491 70.8
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2040.4 1484 70.7
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2039.6 1481 70.8
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2038.1 1481 70.5
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2036.9 1481 70.5
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2036.2 1491 70.5
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2035.0 1493 70.5
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2034.6 1480 70.5
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2032.7 1489 70.6
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2032.7 1477 70.0
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2030.0 1488 70.3
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2027.7 1490 70.2
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2027.3 1491 70.3
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2026.9 1464 70.7
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2024.2 1482 70.1
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2017.3 1488 69.3
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1994.9 1467 70.1
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1978.8 1571 65.8
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1971.8 1299 77.5
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1966.8 1493 68.5
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1956.8 1277 76.9
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1948.3 1455 69.1
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1947.9 1299 77.1
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1932.5 1296 76.3
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1898.6 1578 65.1
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1897.5 1475 65.9
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1846.2 1487 63.6
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1842.8 1382 70.4
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1833.2 1222 76.2
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1822.8 1291 72.6
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1803.1 1361 69.1
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1752.3 1428 64.8
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1745.3 1438 62.0
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1718.4 1418 64.0
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1647.5 988 82.7
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1624.0 1514 57.0
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1620.9 1526 56.4
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1462.6 1411 56.9
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1403.7 1082 68.9
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1399.0 1213 59.9
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1348.6 1307 55.8
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1324.3 1360 55.1
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1266.5 1360 53.2
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1105.1 1274 51.2
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1104.7 730 79.7
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 0.0e+00 1092.8 847 65.9
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 4.3e-305 1052.0 750 69.7
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.7e-259 899.8 776 61.3
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 6.6e-245 852.0 925 53.1
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.5e-238 829.7 579 70.8
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 7.8e-238 828.6 698 64.0
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.1e-203 714.1 594 64.8
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 2.8e-203 713.8 614 60.6
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 4.8e-187 659.8 897 44.1
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 7.9e-182 642.5 370 81.9
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 3.2e-167 594.0 743 46.7
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 5.5e-167 593.2 432 76.4
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 1.4e-159 568.5 475 65.7
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.8e-157 561.6 474 61.6
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 1.2e-137 495.7 568 50.9
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.7e-123 447.6 772 38.7
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 2.9e-107 394.8 1725 26.0
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 2.5e-103 381.7 1557 27.9
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 5.8e-100 370.5 444 48.9
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 1.1e-87 329.7 208 84.1
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 3.6e-86 324.7 1597 25.2
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.4e-85 322.8 334 55.7
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.0e-77 294.7 218 69.3
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.8e-72 279.3 235 66.0
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 2.8e-70 271.9 152 82.9
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.8e-69 269.2 279 57.0
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.2e-68 266.5 224 64.3
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 6.5e-67 260.8 155 72.9
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 2.7e-65 255.4 195 67.2
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 1.7e-46 193.0 102 87.3
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 3.4e-44 185.3 190 53.7
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 1.3e-38 166.8 157 56.1
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 2.4e-37 162.5 214 51.9
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 7.0e-37 161.0 189 52.4
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.6e-33 148.7 341 33.7
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 1.2e-31 143.7 128 56.2
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 4.1e-29 135.2 114 63.2
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 4.7e-25 121.7 745 23.5
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 6.1e-25 121.3 101 67.3
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 1.4e-24 120.2 107 58.9
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 4.0e-24 118.6 102 58.8
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 8.8e-24 117.5 58 87.9
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 2.0e-23 116.3 56 91.1
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.5e-18 99.4 70 70.0
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 7.2e-18 97.8 67 67.2
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.0e-16 94.0 139 41.7
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 3.0e-16 92.4 112 51.8
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 4.0e-16 92.0 470 26.8
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 8.3e-14 84.3 53 75.5
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 8.3e-14 84.3 53 75.5
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 4.7e-09 68.6 54 66.7
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 6.1e-09 68.2 34 82.4
SEGI_21189 Sequoiadendron giganteum HOM05D001486 ORTHO05D037216 1.7e-06 60.1 53 60.4
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 2.2e-06 59.7 131 31.3


User provided reference genes

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