Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 0.0e+00 1505.0 750 100.0
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 5.7e-160 568.9 694 45.5
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.0e-156 558.1 729 45.4
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 9.3e-155 551.6 730 44.5
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 3.6e-154 549.7 730 44.4
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 5.7e-152 542.3 737 43.6
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 7.4e-152 542.0 773 42.9
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 9.1e-150 535.0 747 41.9
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 2.6e-149 533.5 697 44.3
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 1.0e-148 531.6 780 41.5
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 2.1e-146 523.9 743 42.1
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 2.3e-145 520.4 737 41.5
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 3.9e-145 519.6 740 40.9
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.1e-144 518.1 778 40.9
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 3.3e-144 516.5 594 47.1
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 9.7e-144 515.0 754 41.4
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 2.2e-143 513.8 712 42.4
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.4e-142 511.1 738 40.7
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 1.2e-141 508.1 770 40.5
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.0e-141 507.3 771 40.7
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.6e-141 506.9 771 40.5
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 7.7e-141 505.4 739 39.9
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 1.7e-140 504.2 747 40.4
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 6.5e-140 502.3 712 40.7
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.7e-138 496.9 734 42.1
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.8e-137 494.2 718 39.3
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 2.3e-137 493.8 730 41.1
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 3.0e-137 493.4 751 40.3
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 5.2e-137 492.7 728 40.8
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 5.2e-137 492.7 742 40.4
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 6.7e-137 492.3 700 41.4
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.1e-136 491.5 737 40.0
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 5.7e-136 489.2 735 38.6
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.3e-135 488.0 717 41.3
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.7e-135 487.6 717 41.0
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.1e-134 485.0 717 40.9
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.8e-134 484.2 857 37.6
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 3.1e-134 483.4 693 40.3
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 7.0e-134 482.3 734 39.5
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.6e-133 481.1 741 39.8
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 2.6e-133 480.3 531 50.3
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 3.5e-133 479.9 750 39.6
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 5.9e-133 479.2 617 43.8
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 5.9e-133 479.2 717 40.7
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 2.9e-132 476.9 749 39.7
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.1e-131 474.9 731 40.6
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 2.5e-131 473.8 695 41.0
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.2e-130 471.5 664 40.2
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 2.7e-130 470.3 715 41.1
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 2.3e-129 467.2 702 38.7
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 5.2e-129 466.1 731 38.6
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 5.2e-129 466.1 677 40.2
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 5.2e-129 466.1 678 39.8
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 6.7e-129 465.7 714 41.0
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.5e-128 464.5 741 38.3
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 4.4e-128 463.0 730 39.2
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 4.4e-128 463.0 677 40.3
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 5.7e-128 462.6 706 40.1
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 5.7e-128 462.6 686 41.8
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 9.7e-128 461.8 698 40.3
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.3e-127 461.5 237 95.4
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.3e-127 461.5 730 39.0
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.3e-127 461.5 685 41.9
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.7e-127 461.1 725 39.9
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 4.1e-126 456.4 698 39.4
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 7.0e-126 455.7 692 40.6
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 9.1e-126 455.3 705 39.9
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.6e-125 454.5 681 39.4
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.6e-125 454.5 674 41.7
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 2.0e-125 454.1 730 38.5
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 2.7e-125 453.8 703 38.5
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.5e-125 453.4 237 94.9
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 3.5e-125 453.4 724 39.8
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.0e-124 451.8 714 40.1
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.7e-124 451.1 677 41.7
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.1e-123 448.4 734 39.1
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 2.5e-123 447.2 732 38.4
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.5e-123 446.0 640 42.0
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 9.4e-123 445.3 690 39.1
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 3.6e-122 443.4 626 40.6
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 1.4e-121 441.4 679 38.7
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 6.8e-121 439.1 737 37.0
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.6e-120 437.2 668 40.3
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.7e-119 434.5 681 39.8
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 7.0e-118 429.1 717 37.7
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 9.1e-118 428.7 711 39.1
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 4.5e-117 426.4 719 38.5
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 7.7e-117 425.6 697 37.7
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.8e-116 423.3 715 38.9
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.5e-115 421.4 688 37.9
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 3.3e-115 420.2 700 37.6
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 4.7e-114 416.4 680 36.9
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 6.1e-114 416.0 724 37.0
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 6.1e-114 416.0 707 36.5
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 8.3e-111 405.6 720 37.4
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 2.0e-109 401.0 713 36.9
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 2.7e-109 400.6 712 37.2
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.7e-108 397.9 712 36.9
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 3.3e-107 393.7 721 36.3
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 7.3e-107 392.5 717 36.1
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.1e-106 391.0 492 45.1
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 2.8e-106 390.6 734 35.6
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 4.0e-105 386.7 550 41.3
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 2.0e-104 384.4 565 40.7
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 7.5e-104 382.5 733 33.7
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.9e-103 379.8 713 35.2
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.9e-102 377.9 694 33.7
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 3.5e-101 373.6 442 47.1
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 8.6e-100 369.0 561 39.8
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 8.6e-100 369.0 503 41.4
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 3.3e-99 367.1 596 36.4
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 9.5e-99 365.5 421 46.3
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 1.6e-98 364.8 696 34.3
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 8.0e-98 362.5 702 34.5
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.2e-96 358.6 664 36.3
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.4e-88 330.5 492 40.4
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 6.4e-87 326.2 717 32.5
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.1e-86 325.5 189 90.5
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.9e-86 324.7 355 49.6
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.4e-78 297.7 407 41.0
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.0e-76 292.4 410 41.7
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 2.1e-74 284.6 700 28.0
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 3.0e-68 264.2 326 43.3
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.4e-65 255.4 424 35.8
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 9.9e-64 249.2 394 39.6
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 8.4e-63 246.1 541 31.2
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.6e-61 241.9 678 27.6
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 4.3e-59 233.8 397 38.0
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 5.5e-54 216.9 164 62.2
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.2e-48 199.1 670 26.3
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.6e-45 188.7 734 25.1
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 5.1e-44 183.7 545 28.1
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 6.1e-37 160.2 141 53.9
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.8e-31 141.0 619 24.4
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 9.4e-30 136.3 256 31.6
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 7.9e-29 133.3 160 42.5
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 1.1e-27 129.4 129 48.1
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.8e-25 122.1 84 65.5
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 4.1e-25 120.9 84 64.3
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 8.5e-23 113.2 236 36.9
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 1.2e-21 109.4 196 36.2
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.3e-18 97.1 196 30.6
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.4e-17 95.1 333 27.0
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 7.0e-17 93.6 196 33.7
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 8.5e-15 86.7 318 24.8
Aqoxy1G01953 Aquilegia oxysepala HOM05D001988 ORTHO05D077913 6.8e-12 77.0 116 46.6
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 2.6e-11 75.1 105 41.9
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 4.4e-11 74.3 381 21.8
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 2.8e-10 71.6 76 50.0
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 9.1e-09 66.6 66 47.0
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.2e-08 66.2 184 29.9
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 5.9e-08 63.9 177 31.6
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.0e-07 63.2 153 31.4
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.2e-07 62.0 63 50.8
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 1.9e-06 58.9 55 49.1
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 2.5e-06 58.5 116 26.7
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 3.2e-06 58.2 55 49.1
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 9.4e-06 56.6 51 45.1


User provided reference genes

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