Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 6.6e-76 287.7 197 100.0
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 3.4e-56 222.2 204 72.5
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 9.9e-56 220.7 198 82.8
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 1.3e-55 220.3 198 78.8
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 2.2e-55 219.5 198 72.2
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 2.2e-55 219.5 198 83.8
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 4.9e-55 218.4 146 84.2
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 4.9e-55 218.4 203 75.4
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 1.4e-54 216.9 201 82.6
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 2.4e-54 216.1 198 81.3
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 2.4e-54 216.1 201 80.6
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 3.2e-54 215.7 198 71.7
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 3.2e-54 215.7 195 81.5
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 1.2e-53 213.8 181 84.0
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 1.6e-53 213.4 174 74.7
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.1e-53 213.0 198 84.8
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 2.1e-53 213.0 174 78.2
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 3.5e-53 212.2 198 83.8
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 3.5e-53 212.2 181 81.8
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 4.6e-53 211.8 200 83.5
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 6.0e-53 211.5 198 84.3
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 6.0e-53 211.5 148 83.1
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 1.0e-52 210.7 170 84.7
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 1.3e-52 210.3 148 82.4
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 1.3e-52 210.3 148 82.4
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 1.8e-52 209.9 178 78.1
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 2.3e-52 209.5 179 81.6
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 3.9e-52 208.8 196 78.1
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 3.9e-52 208.8 198 77.3
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 3.9e-52 208.8 186 82.3
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 5.1e-52 208.4 146 79.5
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 6.7e-52 208.0 173 81.5
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 8.7e-52 207.6 153 79.7
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 2.5e-51 206.1 148 74.3
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 7.4e-51 204.5 172 83.1
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 7.4e-51 204.5 159 80.5
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 9.6e-51 204.1 169 76.9
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 9.6e-51 204.1 197 81.7
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 9.6e-51 204.1 150 82.0
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 1.3e-50 203.8 153 83.0
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 1.6e-50 203.4 171 82.5
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 1.6e-50 203.4 196 74.0
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.6e-50 203.4 202 77.7
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 2.8e-50 202.6 151 76.2
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 2.8e-50 202.6 140 82.1
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.7e-50 202.2 148 76.4
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 4.8e-50 201.8 199 71.9
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 4.8e-50 201.8 199 71.9
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.8e-50 201.8 174 82.2
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 4.8e-50 201.8 174 82.2
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 8.1e-50 201.1 149 82.6
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 8.1e-50 201.1 197 80.7
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 1.4e-49 200.3 143 84.6
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.4e-49 200.3 148 82.4
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 1.8e-49 199.9 155 78.7
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.4e-49 199.5 149 85.2
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 4.0e-49 198.7 172 82.0
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 6.9e-49 198.0 208 72.1
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 9.0e-49 197.6 195 73.8
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.2e-48 197.2 205 69.3
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 1.2e-48 197.2 175 73.7
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.2e-48 197.2 174 80.5
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 2.0e-48 196.4 147 81.6
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 2.0e-48 196.4 147 81.6
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 2.6e-48 196.1 180 75.0
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 2.6e-48 196.1 178 80.3
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 3.4e-48 195.7 173 78.6
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 3.4e-48 195.7 179 78.8
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 4.5e-48 195.3 149 79.2
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 4.5e-48 195.3 177 80.8
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 5.8e-48 194.9 133 81.2
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 5.8e-48 194.9 176 81.2
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 5.8e-48 194.9 141 83.0
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 7.6e-48 194.5 149 80.5
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 1.0e-47 194.1 150 80.0
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.0e-47 194.1 153 78.4
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 1.0e-47 194.1 148 81.8
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 1.3e-47 193.7 183 75.4
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.7e-47 193.4 152 78.9
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 2.2e-47 193.0 173 71.7
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 2.2e-47 193.0 173 71.7
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 2.2e-47 193.0 154 76.0
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 2.2e-47 193.0 171 80.7
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 2.2e-47 193.0 148 74.3
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.2e-47 193.0 162 74.7
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 2.9e-47 192.6 144 82.6
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 3.8e-47 192.2 174 75.3
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 3.8e-47 192.2 148 77.0
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 4.9e-47 191.8 173 65.3
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 4.9e-47 191.8 148 73.0
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 6.5e-47 191.4 173 71.7
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 6.5e-47 191.4 146 78.1
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 6.5e-47 191.4 146 80.1
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 6.5e-47 191.4 146 80.1
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 6.5e-47 191.4 146 79.5
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 6.5e-47 191.4 163 74.8
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 1.4e-46 190.3 180 70.0
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 1.4e-46 190.3 178 70.2
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 1.4e-46 190.3 146 72.6
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 2.5e-46 189.5 150 78.0
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 2.5e-46 189.5 149 75.8
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 2.5e-46 189.5 150 78.0
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 2.5e-46 189.5 148 80.4
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.5e-46 189.5 145 80.7
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.5e-46 189.5 140 79.3
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 2.5e-46 189.5 142 83.1
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 2.5e-46 189.5 142 83.1
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 3.2e-46 189.1 150 77.3
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.2e-46 189.1 146 79.5
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 4.2e-46 188.7 151 78.8
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 5.5e-46 188.3 201 79.1
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 5.5e-46 188.3 150 77.3
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 5.5e-46 188.3 154 76.0
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 9.3e-46 187.6 148 78.4
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 1.2e-45 187.2 144 81.9
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 1.6e-45 186.8 171 70.8
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 2.1e-45 186.4 154 77.9
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 2.1e-45 186.4 158 70.3
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 3.5e-45 185.7 198 64.1
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 4.6e-45 185.3 205 73.7
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 4.6e-45 185.3 159 75.5
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 7.9e-45 184.5 148 75.7
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 1.0e-44 184.1 148 76.4
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 1.3e-44 183.7 148 73.0
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 1.3e-44 183.7 154 77.3
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 1.3e-44 183.7 152 75.0
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 1.3e-44 183.7 154 74.7
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 1.3e-44 183.7 154 77.3
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 1.3e-44 183.7 154 77.3
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 1.8e-44 183.3 150 72.7
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 1.8e-44 183.3 159 74.2
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 1.8e-44 183.3 142 78.9
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 5.1e-44 181.8 145 76.6
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 1.5e-43 180.3 154 74.7
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 3.3e-43 179.1 145 75.9
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 4.3e-43 178.7 136 80.1
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 1.3e-42 177.2 232 63.4
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.8e-42 175.3 148 75.7
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 1.4e-41 173.7 150 70.7
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 1.8e-41 173.3 148 72.3
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 2.4e-41 172.9 159 64.8
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 1.5e-40 170.2 153 72.5
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.0e-40 169.9 151 72.8
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 3.4e-40 169.1 90 87.8
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.0e-39 167.5 89 88.8
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 2.9e-39 166.0 92 84.8
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 6.5e-39 164.9 90 87.8
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 3.0e-36 156.0 97 75.3
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.1e-33 147.5 81 82.7
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 5.9e-32 141.7 129 61.2
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 7.7e-32 141.4 134 64.9
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 1.1e-30 137.5 199 63.3
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 4.6e-29 132.1 105 65.7
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 5.7e-27 125.2 80 71.2
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 4.1e-25 119.0 116 81.9
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.2e-24 117.5 76 65.8
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 1.0e-23 114.4 60 88.3
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 8.5e-23 111.3 95 61.1
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 5.7e-19 98.6 114 45.6
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 1.3e-18 97.4 167 53.9
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 2.6e-16 89.7 106 51.9
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 1.3e-15 87.4 103 50.5
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 2.9e-15 86.3 49 75.5
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 2.2e-10 70.1 80 52.5
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 2.2e-10 70.1 80 52.5
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 6.3e-10 68.6 45 73.3
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 8.2e-10 68.2 80 51.2
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 1.8e-09 67.0 80 51.2
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 1.8e-09 67.0 80 51.2
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 1.8e-09 67.0 80 51.2
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 5.9e-08 62.0 35 77.1
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 1.0e-07 61.2 149 46.3


User provided reference genes

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