Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 0.0e+00 1325.8 681 100.0
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 4.9e-219 765.0 673 61.4
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 4.1e-218 761.9 677 60.4
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 3.9e-216 755.4 668 61.1
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 2.3e-208 729.6 675 57.5
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 1.9e-207 726.5 668 58.2
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 1.6e-201 706.8 667 56.8
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 4.6e-201 705.3 680 56.8
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 8.7e-200 701.0 671 56.5
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 8.7e-200 701.0 661 56.9
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 4.3e-199 698.7 665 56.1
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 6.2e-198 694.9 681 55.2
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 6.2e-198 694.9 670 56.4
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 8.1e-198 694.5 670 56.4
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 2.4e-197 693.0 670 56.1
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 6.9e-197 691.4 675 56.9
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 2.6e-196 689.5 661 56.3
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 7.6e-196 688.0 674 57.3
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 7.1e-194 681.4 669 55.0
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 1.0e-192 677.6 697 54.2
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 1.3e-192 677.2 665 54.7
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 8.7e-192 674.5 671 55.4
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 1.9e-191 673.3 666 54.8
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 4.0e-189 665.6 711 52.2
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 5.3e-189 665.2 695 53.4
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 1.5e-188 663.7 664 53.3
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 5.8e-188 661.8 690 52.5
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 1.3e-187 660.6 672 54.3
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 1.7e-187 660.2 667 53.7
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.4e-186 657.1 672 54.3
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 1.9e-186 656.8 670 56.1
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 2.1e-185 653.3 667 54.7
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 5.1e-184 648.7 667 53.1
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 6.2e-182 641.7 669 53.2
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 2.4e-181 639.8 693 51.8
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 5.3e-181 638.6 694 52.9
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 1.5e-180 637.1 677 52.3
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 2.6e-180 636.3 665 53.7
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 7.6e-180 634.8 690 50.7
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 3.8e-179 632.5 740 49.5
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 8.4e-179 631.3 836 46.2
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.4e-178 630.6 677 51.8
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 1.9e-178 630.2 667 52.9
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 3.2e-178 629.4 673 52.7
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 5.5e-178 628.6 666 52.7
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 4.6e-177 625.5 667 52.8
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.3e-176 624.0 673 52.9
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 1.8e-176 623.6 664 53.0
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 3.0e-176 622.9 669 51.6
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 3.9e-176 622.5 694 49.9
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.9e-176 622.5 700 51.4
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 1.1e-175 620.9 604 55.6
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 1.9e-175 620.2 669 52.2
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 7.4e-175 618.2 667 52.8
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 1.6e-174 617.1 655 53.0
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 6.3e-174 615.1 735 49.0
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 2.4e-173 613.2 670 52.4
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 2.4e-173 613.2 663 52.3
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 3.1e-173 612.8 670 52.4
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 1.2e-172 610.9 667 52.6
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 1.2e-172 610.9 667 52.6
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 1.2e-172 610.9 667 52.6
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.6e-172 609.8 620 54.4
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 2.9e-171 606.3 664 50.8
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.4e-170 604.0 664 51.2
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 2.1e-169 600.1 685 49.2
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 4.3e-167 592.4 630 51.6
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 1.6e-166 590.5 665 51.0
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 4.1e-165 585.9 665 51.1
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 4.6e-161 572.4 676 49.6
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 1.8e-160 570.5 669 48.7
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 2.3e-160 570.1 656 49.5
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 2.0e-159 567.0 612 53.1
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 5.7e-159 565.5 673 48.3
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 1.4e-157 560.8 670 48.8
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 4.1e-157 559.3 613 52.4
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 1.5e-156 557.4 670 47.5
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 5.5e-154 548.9 672 49.4
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 8.8e-152 541.6 596 51.3
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 8.2e-150 535.0 668 47.8
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 1.4e-149 534.3 668 46.7
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 4.5e-148 529.3 581 52.5
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 5.9e-148 528.9 662 47.7
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 7.7e-148 528.5 666 47.0
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 2.1e-145 520.4 684 44.9
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 2.3e-144 516.9 590 50.8
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 5.3e-141 505.8 664 45.9
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 4.5e-132 476.1 582 48.6
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 1.6e-129 467.6 503 52.3
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 1.3e-126 458.0 527 51.8
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 5.6e-122 442.6 675 41.2
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 9.5e-122 441.8 684 39.9
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 6.8e-120 435.6 509 49.7
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 2.2e-118 430.6 593 45.5
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 8.0e-113 412.1 673 38.9
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 5.2e-112 409.5 674 37.5
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 5.8e-111 406.0 653 42.3
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.4e-109 401.4 523 46.5
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 5.4e-109 399.4 556 43.2
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 2.8e-97 360.5 452 46.7
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 1.0e-91 342.0 773 34.0
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.8e-89 334.0 243 70.4
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 3.1e-88 330.5 225 71.1
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.2e-84 318.5 458 42.6
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 2.6e-79 300.8 518 39.8
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 2.1e-76 291.2 254 60.2
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 1.8e-75 288.1 313 50.5
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 8.1e-73 279.3 546 36.3
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 1.9e-69 268.1 912 27.1
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.4e-63 247.3 266 51.9
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.2e-60 238.8 171 67.3
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 9.7e-58 229.2 164 67.7
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 2.1e-57 228.0 167 66.5
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 4.5e-55 220.3 430 37.2
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 3.3e-50 204.1 357 38.4
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 9.7e-50 202.6 135 72.6
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 5.9e-47 193.4 174 54.6
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.0e-46 192.6 143 67.1
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 3.6e-44 184.1 305 41.3
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 3.6e-44 184.1 163 58.3
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 4.6e-44 183.7 186 53.8
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.2e-39 169.1 147 60.5
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.2e-39 169.1 140 61.4
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 7.7e-39 166.4 174 53.4
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 2.9e-38 164.5 163 56.4
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 2.0e-34 151.8 118 64.4
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.4e-32 145.6 104 68.3
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 1.2e-31 142.5 297 33.0
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.6e-31 142.1 143 52.4
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.0e-27 127.9 139 48.2
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 5.7e-26 123.6 315 29.8
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 6.3e-25 120.2 261 31.4
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 5.5e-21 107.1 90 64.4
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 2.7e-20 104.8 163 41.7
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 3.6e-20 104.4 144 45.8
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 1.5e-18 99.0 95 52.6
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 1.3e-17 95.9 215 32.1
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 1.7e-17 95.5 55 80.0
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 1.8e-16 92.0 145 40.7
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 5.4e-16 90.5 53 83.0
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 2.0e-15 88.6 55 72.7
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 7.7e-15 86.7 282 29.4
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 5.7e-10 70.5 61 50.8
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 8.3e-09 66.6 69 49.3
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 2.9e-06 58.2 151 33.8


User provided reference genes

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