Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1342.8 648 100.0
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1291.2 649 95.5
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1287.7 648 95.1
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1269.6 650 94.2
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1265.4 649 93.8
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1248.0 651 91.9
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1226.1 647 91.2
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1211.8 649 89.4
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1200.3 645 88.2
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1198.7 649 88.8
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1197.6 648 87.3
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1196.8 645 88.7
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1196.0 649 87.5
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1194.9 646 88.5
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1193.7 649 87.8
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1193.3 645 87.4
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1193.3 649 88.4
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1193.3 646 87.6
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1193.3 650 86.9
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1192.9 649 87.7
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1192.6 651 88.3
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1192.6 649 87.7
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1192.6 648 87.7
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1191.4 645 87.9
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1189.5 649 87.5
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1189.1 643 88.2
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1189.1 648 86.6
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 646 88.5
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 645 87.3
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 648 87.0
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1185.2 651 88.5
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1184.9 648 86.3
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1184.1 646 86.7
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1183.7 648 86.3
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 649 86.9
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 652 86.2
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 645 86.8
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 645 86.7
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 645 87.8
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 645 86.8
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 649 87.4
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1181.0 649 87.2
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1180.6 649 86.1
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1180.2 648 86.7
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1179.9 647 87.2
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1179.5 651 86.9
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1179.5 646 86.2
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1178.7 651 86.0
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1178.7 648 86.0
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1178.3 650 86.9
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1178.3 649 87.4
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1178.3 647 87.5
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 652 85.7
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 647 86.7
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 647 86.7
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 652 85.9
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1175.6 647 86.7
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1175.2 648 86.4
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1175.2 648 86.9
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1174.1 645 86.7
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1173.7 652 85.6
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1171.8 640 87.5
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1168.7 647 86.2
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1166.4 647 86.4
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1165.6 641 87.8
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1165.2 648 86.6
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 645 87.1
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1163.3 651 87.6
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 643 86.2
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1162.1 646 85.1
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 651 85.3
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 648 86.1
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1160.2 643 86.2
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1159.4 622 89.9
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1158.3 645 85.7
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1156.7 643 86.6
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1156.7 635 87.4
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 645 85.1
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1154.0 649 84.6
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 649 84.4
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1150.2 649 84.9
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1149.4 648 84.0
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 643 85.4
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 645 85.0
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1147.1 651 83.9
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1145.6 648 84.1
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1145.6 645 84.5
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1140.9 646 84.2
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1140.9 646 84.2
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1139.8 715 77.9
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1139.4 646 84.2
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1139.0 649 85.1
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1138.6 648 84.7
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1137.9 646 84.1
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1135.6 646 83.7
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1133.6 650 84.0
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1118.2 594 90.2
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1117.1 585 91.1
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1114.0 619 85.6
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1112.8 647 83.0
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1106.7 642 83.2
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1102.8 650 81.4
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1092.4 643 82.9
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 8.9e-312 1073.2 645 80.2
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 2.9e-306 1054.7 675 76.3
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 4.0e-303 1044.3 614 81.1
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 1.5e-302 1042.3 584 84.2
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 4.4e-302 1040.8 540 90.6
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 7.5e-302 1040.0 582 84.2
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 3.8e-298 1027.7 590 82.7
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.4e-292 1009.2 606 78.9
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.3e-290 1002.7 554 83.9
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 3.9e-290 1001.1 613 79.9
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 5.8e-254 880.9 475 87.2
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 3.4e-230 802.0 513 74.5
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 1.4e-202 710.3 382 89.5
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 1.9e-196 689.9 394 84.5
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 2.0e-193 679.9 585 59.7
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 3.1e-146 523.1 267 91.8
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.9e-127 460.7 555 47.9
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 4.5e-73 280.0 217 63.6
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.0e-69 268.9 125 96.8
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 3.1e-45 187.6 108 83.3
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 2.1e-41 174.9 151 57.0
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 4.6e-41 173.7 97 85.6
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 4.7e-38 163.7 150 60.0
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.5e-20 105.5 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.7e-19 102.1 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 1.0e-08 66.2 32 96.9


User provided reference genes

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