Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.8e-42 174.9 87 100.0
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.7e-18 94.4 50 94.0
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 6.8e-17 90.5 50 90.0
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 8.9e-17 90.1 50 86.0
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.5e-16 89.4 50 86.0
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 2.0e-16 89.0 50 88.0
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 1.3e-15 86.3 50 84.0
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.2e-15 85.5 52 80.8
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.9e-15 85.1 50 84.0
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.9e-15 85.1 50 84.0
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.9e-15 85.1 50 84.0
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.9e-15 85.1 50 84.0
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.9e-15 85.1 50 84.0
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 3.8e-15 84.7 50 84.0
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 4.9e-15 84.3 50 84.0
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 4.9e-15 84.3 50 82.0
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 4.9e-15 84.3 50 82.0
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 6.4e-15 84.0 50 80.0
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 6.4e-15 84.0 50 80.0
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 6.4e-15 84.0 50 82.0
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 8.4e-15 83.6 51 80.4
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 8.4e-15 83.6 50 84.0
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 8.4e-15 83.6 50 82.0
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.4e-14 82.8 50 82.0
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 1.4e-14 82.8 50 82.0
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.9e-14 82.4 51 78.4
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.9e-14 82.4 50 80.0
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.9e-14 82.4 50 80.0
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.9e-14 82.4 50 80.0
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 2.4e-14 82.0 50 80.0
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 2.4e-14 82.0 50 80.0
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 3.2e-14 81.6 51 74.5
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 4.2e-14 81.3 51 76.5
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.2e-14 81.3 48 83.3
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 4.2e-14 81.3 51 72.5
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 4.2e-14 81.3 50 80.0
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 5.4e-14 80.9 50 78.0
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 5.4e-14 80.9 50 76.0
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 5.4e-14 80.9 50 78.0
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 5.4e-14 80.9 50 78.0
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 7.1e-14 80.5 50 76.0
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 7.1e-14 80.5 50 80.0
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 7.1e-14 80.5 50 78.0
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 9.2e-14 80.1 50 78.0
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 9.2e-14 80.1 50 80.0
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.2e-13 79.7 51 74.5
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 1.2e-13 79.7 52 76.9
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.6e-13 79.3 52 73.1
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.6e-13 79.3 52 73.1
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.6e-13 79.3 52 71.2
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 1.6e-13 79.3 52 73.1
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 1.6e-13 79.3 52 73.1
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 1.6e-13 79.3 52 73.1
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.6e-13 79.3 52 71.2
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 1.6e-13 79.3 52 73.1
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 1.6e-13 79.3 52 71.2
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 1.6e-13 79.3 52 73.1
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.6e-13 79.3 50 78.0
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.6e-13 79.3 50 78.0
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 1.6e-13 79.3 50 76.0
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.1e-13 79.0 52 71.2
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.1e-13 79.0 52 71.2
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 2.1e-13 79.0 50 76.0
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 2.1e-13 79.0 52 75.0
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.1e-13 79.0 52 71.2
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.7e-13 78.6 50 76.0
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.7e-13 78.6 50 76.0
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 2.7e-13 78.6 52 73.1
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 2.7e-13 78.6 49 79.6
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.7e-13 78.6 50 78.0
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 2.7e-13 78.6 50 76.0
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.7e-13 78.6 50 74.0
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 2.7e-13 78.6 50 76.0
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 3.5e-13 78.2 50 74.0
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 3.5e-13 78.2 50 76.0
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 3.5e-13 78.2 49 77.6
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 4.6e-13 77.8 49 73.5
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.6e-13 77.8 50 76.0
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.6e-13 77.8 52 69.2
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 4.6e-13 77.8 50 74.0
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 4.6e-13 77.8 48 79.2
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 6.0e-13 77.4 50 74.0
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 6.0e-13 77.4 50 76.0
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.0e-13 77.4 50 76.0
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.0e-13 77.4 50 76.0
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 6.0e-13 77.4 50 76.0
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 6.0e-13 77.4 50 76.0
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 7.8e-13 77.0 51 74.5
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 7.8e-13 77.0 50 74.0
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.8e-13 77.0 50 76.0
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.8e-13 77.0 50 76.0
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 7.8e-13 77.0 51 70.6
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 7.8e-13 77.0 50 74.0
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 7.8e-13 77.0 50 74.0
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 1.0e-12 76.6 51 74.5
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.0e-12 76.6 47 78.7
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.3e-12 76.3 52 67.3
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.3e-12 76.3 50 76.0
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.3e-12 76.3 50 70.0
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.3e-12 76.3 51 70.6
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 1.3e-12 76.3 50 76.0
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 1.7e-12 75.9 50 74.0
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.7e-12 75.9 50 74.0
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 2.3e-12 75.5 50 74.0
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 2.3e-12 75.5 51 72.5
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 2.3e-12 75.5 51 66.7
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 2.3e-12 75.5 52 71.2
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 2.3e-12 75.5 50 74.0
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.3e-12 75.5 52 71.2
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 3.0e-12 75.1 50 70.0
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 3.0e-12 75.1 47 74.5
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 3.0e-12 75.1 50 70.0
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.0e-12 75.1 50 70.0
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 3.9e-12 74.7 50 72.0
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 5.1e-12 74.3 50 72.0
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 5.1e-12 74.3 50 72.0
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 5.1e-12 74.3 50 72.0
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 5.1e-12 74.3 47 76.6
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 6.6e-12 73.9 50 70.0
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 6.6e-12 73.9 47 74.5
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 6.6e-12 73.9 52 65.4
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 6.6e-12 73.9 50 68.0
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 6.6e-12 73.9 50 68.0
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 6.6e-12 73.9 50 68.0
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 6.6e-12 73.9 50 68.0
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 6.6e-12 73.9 50 68.0
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 6.6e-12 73.9 50 68.0
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 6.6e-12 73.9 50 68.0
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.6e-12 73.9 50 74.0
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 8.7e-12 73.6 50 68.0
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 8.7e-12 73.6 45 80.0
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 7.3e-11 70.5 51 58.8
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 7.3e-11 70.5 52 63.5
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.1e-10 68.9 51 56.9
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 2.1e-10 68.9 50 64.0
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 3.6e-10 68.2 48 68.8
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 4.8e-10 67.8 51 56.9
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 6.2e-10 67.4 48 70.8
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 6.2e-10 67.4 51 56.9
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.1e-09 66.6 76 44.7
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.4e-09 66.2 42 73.8
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.4e-09 66.2 51 70.6
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 1.4e-09 66.2 52 61.5
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 4.0e-09 64.7 51 56.9
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 5.3e-09 64.3 48 66.7
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 5.3e-09 64.3 51 60.8
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 6.9e-09 63.9 48 64.6
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 9.0e-09 63.5 51 66.7
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 9.0e-09 63.5 44 72.7
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 1.2e-08 63.2 51 52.9
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 5.8e-08 60.8 53 54.7
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 6.4e-07 57.4 34 76.5
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.9e-06 55.8 30 86.7
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 4.2e-06 54.7 32 81.2


User provided reference genes

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