Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 2.6e-72 275.8 197 100.0
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 4.8e-66 255.0 199 91.0
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 2.2e-55 219.5 155 85.8
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 3.8e-55 218.8 172 88.4
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.4e-54 216.9 153 86.9
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 9.3e-54 214.2 155 85.8
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 9.3e-54 214.2 155 85.8
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 9.3e-54 214.2 158 72.8
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 2.1e-53 213.0 155 85.2
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 2.1e-53 213.0 160 84.4
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 2.7e-53 212.6 153 85.6
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.7e-53 212.6 154 83.1
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 4.6e-53 211.8 155 85.2
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 6.0e-53 211.5 156 82.7
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 6.0e-53 211.5 153 85.0
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 6.0e-53 211.5 156 73.1
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 6.0e-53 211.5 155 78.1
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 7.9e-53 211.1 152 82.9
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 7.9e-53 211.1 143 86.0
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 1.0e-52 210.7 160 75.0
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 1.0e-52 210.7 193 86.0
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.0e-52 210.7 154 85.1
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 1.3e-52 210.3 154 81.2
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 1.3e-52 210.3 152 84.2
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.3e-52 209.5 153 79.1
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 2.3e-52 209.5 155 80.6
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 3.0e-52 209.1 153 79.1
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 3.0e-52 209.1 154 82.5
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 3.9e-52 208.8 158 82.9
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 3.9e-52 208.8 195 80.5
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 5.1e-52 208.4 172 83.7
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 6.7e-52 208.0 151 84.1
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 6.7e-52 208.0 151 74.2
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 6.7e-52 208.0 152 85.5
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 8.7e-52 207.6 155 78.7
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 8.7e-52 207.6 153 83.0
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 1.1e-51 207.2 158 74.7
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 1.1e-51 207.2 154 79.2
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 1.1e-51 207.2 154 79.2
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 1.5e-51 206.8 156 84.6
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 1.5e-51 206.8 155 82.6
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.9e-51 206.5 156 72.4
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 1.9e-51 206.5 145 87.6
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 1.9e-51 206.5 175 78.3
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 2.5e-51 206.1 169 66.9
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 2.5e-51 206.1 154 78.6
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 4.3e-51 205.3 154 82.5
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 4.3e-51 205.3 160 78.1
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 4.3e-51 205.3 153 85.6
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 5.6e-51 204.9 154 78.6
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 5.6e-51 204.9 154 78.6
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 5.6e-51 204.9 153 77.8
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 7.4e-51 204.5 150 78.7
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 7.4e-51 204.5 150 78.7
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 9.6e-51 204.1 159 78.0
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 9.6e-51 204.1 156 82.7
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.3e-50 203.8 147 83.7
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 1.3e-50 203.8 147 83.7
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 1.3e-50 203.8 153 83.0
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 1.6e-50 203.4 158 74.1
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 1.6e-50 203.4 158 79.7
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 2.1e-50 203.0 152 75.7
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.1e-50 203.0 147 83.0
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 2.1e-50 203.0 147 83.0
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 2.1e-50 203.0 151 82.1
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 2.8e-50 202.6 154 81.8
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 2.8e-50 202.6 154 81.8
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 2.8e-50 202.6 154 81.8
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 2.8e-50 202.6 175 74.3
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 2.8e-50 202.6 151 84.8
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.8e-50 201.8 147 83.0
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 6.2e-50 201.4 150 77.3
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.2e-50 201.4 147 82.3
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 8.1e-50 201.1 149 83.2
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 8.1e-50 201.1 153 75.8
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 8.1e-50 201.1 152 80.9
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-49 200.7 154 77.3
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 1.1e-49 200.7 154 78.6
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 1.1e-49 200.7 154 77.3
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 1.1e-49 200.7 154 77.3
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 1.4e-49 200.3 150 82.7
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 1.4e-49 200.3 150 82.7
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.4e-49 200.3 155 72.3
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.4e-49 200.3 154 79.2
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 1.8e-49 199.9 155 80.0
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 2.4e-49 199.5 150 83.3
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 2.4e-49 199.5 196 70.4
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 2.4e-49 199.5 188 75.5
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 2.4e-49 199.5 152 82.9
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 3.1e-49 199.1 145 85.5
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 3.1e-49 199.1 165 70.3
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 4.0e-49 198.7 157 77.1
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 4.0e-49 198.7 153 81.7
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 4.0e-49 198.7 182 79.7
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 5.3e-49 198.4 151 77.5
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 5.3e-49 198.4 151 78.1
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 6.9e-49 198.0 155 81.3
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 1.2e-48 197.2 154 74.0
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 1.5e-48 196.8 154 73.4
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.5e-48 196.8 157 80.3
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 1.5e-48 196.8 154 79.2
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 1.5e-48 196.8 164 73.8
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 2.0e-48 196.4 154 79.2
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 2.0e-48 196.4 165 78.8
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 2.0e-48 196.4 144 84.0
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 3.4e-48 195.7 199 79.9
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 4.5e-48 195.3 151 76.2
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 4.5e-48 195.3 143 83.9
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 5.8e-48 194.9 152 79.6
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 7.6e-48 194.5 158 78.5
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.3e-47 193.7 154 73.4
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 1.3e-47 193.7 156 82.7
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 1.7e-47 193.4 154 77.9
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 2.2e-47 193.0 152 78.9
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.2e-47 193.0 158 75.3
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 2.9e-47 192.6 151 79.5
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 3.8e-47 192.2 155 80.6
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 4.9e-47 191.8 151 74.2
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 4.9e-47 191.8 148 75.7
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 4.9e-47 191.8 154 77.3
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 8.4e-47 191.0 142 83.8
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 8.4e-47 191.0 154 79.9
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.4e-46 190.3 154 71.4
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 2.5e-46 189.5 175 81.1
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 2.5e-46 189.5 190 67.9
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 3.2e-46 189.1 144 77.1
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 1.2e-45 187.2 145 81.4
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 2.7e-45 186.0 154 78.6
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 4.6e-45 185.3 148 81.8
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 4.6e-45 185.3 143 83.9
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 4.6e-45 185.3 143 83.9
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 6.0e-45 184.9 145 82.8
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 6.0e-45 184.9 160 76.2
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 7.9e-45 184.5 157 73.9
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 1.8e-44 183.3 160 68.8
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 1.8e-44 183.3 111 78.4
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 5.1e-44 181.8 152 75.0
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 6.7e-44 181.4 151 76.2
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 8.7e-44 181.0 95 88.4
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 8.7e-44 181.0 154 76.6
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 2.5e-43 179.5 91 91.2
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 5.7e-43 178.3 100 81.0
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 8.2e-42 174.5 148 74.3
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.8e-41 173.3 154 73.4
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.8e-41 173.3 97 84.5
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 9.0e-41 171.0 156 71.8
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 3.4e-40 169.1 89 87.6
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.3e-39 167.2 89 86.5
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.1e-35 154.1 81 85.2
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 7.4e-35 151.4 155 67.1
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 2.4e-33 146.4 136 64.7
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 5.9e-32 141.7 127 61.4
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 3.6e-29 132.5 80 75.0
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 3.0e-28 129.4 100 68.0
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.7e-26 123.6 76 68.4
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 2.2e-26 123.2 60 95.0
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.1e-22 110.9 57 91.2
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 2.5e-22 109.8 93 60.2
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 1.8e-20 103.6 94 51.1
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 2.0e-19 100.1 49 91.8
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 3.3e-19 99.4 150 48.0
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 1.2e-16 90.9 110 51.8
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 4.5e-16 89.0 110 50.9
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 3.6e-13 79.3 46 82.6
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 2.0e-11 73.6 85 55.3
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 2.0e-11 73.6 85 55.3
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 9.7e-11 71.2 45 75.6
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 1.7e-10 70.5 85 54.1
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 1.7e-10 70.5 85 54.1
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 1.7e-10 70.5 85 54.1
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 1.7e-10 70.5 151 49.0
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 1.9e-06 57.0 35 71.4


User provided reference genes

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