Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2901.7 1488 100.0
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2570.8 1485 88.4
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2466.8 1474 85.6
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2416.0 1568 80.4
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2295.8 1548 77.3
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2235.7 1493 77.0
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2192.9 1498 75.2
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2182.1 1497 74.4
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2180.2 1495 74.4
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2177.9 1497 74.7
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2173.7 1496 74.5
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2163.7 1497 74.5
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2162.9 1493 74.9
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2162.5 1498 74.6
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2154.4 1500 73.7
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2153.6 1498 73.9
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2152.1 1497 73.5
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2151.7 1497 73.9
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2150.6 1492 74.7
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2141.3 1500 74.2
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2137.8 1497 73.8
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2137.8 1496 72.8
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2134.8 1496 73.8
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2134.4 1496 73.3
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2134.0 1490 73.5
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2134.0 1497 73.5
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2132.8 1494 73.1
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2124.7 1496 72.7
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2124.4 1496 73.7
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2121.7 1487 73.0
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2119.4 1496 72.9
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2115.1 1498 72.1
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2112.4 1497 72.7
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2112.4 1493 73.4
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2108.6 1492 72.3
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2107.4 1502 71.8
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2107.4 1496 72.7
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2103.9 1495 72.4
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2097.4 1532 71.2
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2095.1 1492 71.6
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2095.1 1494 71.4
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2093.9 1492 71.6
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2090.5 1499 71.0
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2089.7 1495 72.2
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2089.7 1486 71.4
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2085.1 1492 71.4
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2082.8 1493 71.2
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2078.5 1482 71.9
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2077.0 1484 71.6
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2076.6 1493 71.3
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2076.2 1452 74.1
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2073.5 1554 69.9
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2073.1 1485 71.5
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2069.7 1492 71.2
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2068.5 1492 71.2
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2066.2 1498 71.1
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2053.1 1495 70.8
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2050.4 1539 69.4
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2044.2 1500 71.0
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2042.3 1492 70.7
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2040.8 1498 71.0
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2040.0 1486 70.7
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2022.7 1496 69.5
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2016.5 1569 67.8
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2015.4 1493 69.6
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2002.3 1485 69.8
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 1992.2 1495 68.8
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 1990.7 1488 69.8
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1984.9 1485 69.0
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 1981.8 1488 69.0
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 1980.7 1488 69.0
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 1978.4 1489 69.1
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 1978.4 1488 69.0
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1966.4 1485 69.1
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1965.7 1485 69.0
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1964.9 1498 68.1
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1964.1 1495 69.0
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 1963.7 1488 68.6
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1962.2 1495 67.8
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1957.6 1495 68.6
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1953.3 1487 68.7
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1948.7 1495 68.4
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1948.3 1490 68.1
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1948.3 1495 68.2
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1947.6 1497 68.4
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1944.5 1496 68.4
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1940.6 1500 68.0
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1926.4 1489 67.2
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1926.0 1489 67.3
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1917.1 1475 67.9
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1885.2 1502 65.9
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1882.1 1466 67.5
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1879.4 1305 75.0
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1855.9 1308 73.4
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1853.2 1304 74.6
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1824.3 1277 73.4
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1812.0 1591 63.1
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1808.9 1476 63.6
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1780.8 1483 62.2
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1760.7 1299 70.5
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1742.6 1221 73.3
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1728.4 1389 67.2
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1721.8 1365 66.9
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1710.3 1436 62.0
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1693.3 1427 63.6
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1685.6 1440 62.8
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1565.4 1523 55.3
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1549.6 1514 55.0
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1529.2 988 78.5
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1415.6 1415 56.2
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1350.1 1207 58.1
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1348.2 1082 65.9
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1312.7 1306 55.4
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1293.1 1373 54.4
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1221.5 1373 52.1
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 1.2e-307 1060.4 1278 51.1
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 3.0e-298 1029.2 737 73.9
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 1.0e-293 1014.2 749 69.6
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.2e-292 1008.8 847 61.2
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 3.1e-250 869.8 779 61.0
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 8.4e-232 808.5 922 51.3
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.2e-230 804.7 589 68.6
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 2.7e-230 803.5 709 60.5
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 3.9e-197 693.3 614 59.4
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.7e-187 661.4 597 60.1
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 3.2e-183 647.1 896 44.5
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.9e-175 621.3 370 80.8
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 2.0e-164 584.7 745 46.4
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.1e-154 552.4 442 68.8
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.9e-151 541.6 474 62.0
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 9.5e-151 539.3 478 64.0
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 1.6e-134 485.3 567 51.7
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.1e-113 415.2 771 37.4
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 7.9e-97 360.1 1850 25.1
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 3.8e-91 341.3 1608 26.0
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.1e-89 335.5 445 46.1
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 3.6e-89 334.7 1580 27.1
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 4.5e-84 317.8 218 77.1
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.8e-80 305.8 397 47.4
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.2e-74 284.6 224 65.6
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 2.0e-68 265.8 152 80.3
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.9e-66 259.2 243 59.7
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 2.5e-66 258.8 155 74.2
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 7.2e-66 257.3 230 60.0
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 1.2e-65 256.5 201 66.2
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 3.7e-62 245.0 270 53.0
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 3.7e-46 191.8 102 87.3
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 1.3e-43 183.3 186 54.8
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 1.9e-37 162.9 189 51.9
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 1.0e-35 157.1 159 51.6
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 1.0e-35 157.1 217 48.4
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 6.2e-33 147.9 121 61.2
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 7.6e-31 141.0 343 33.5
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 1.4e-29 136.7 121 62.0
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 7.3e-26 124.4 107 58.9
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 1.6e-25 123.2 102 59.8
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 4.0e-24 118.6 343 29.4
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 1.5e-23 116.7 56 89.3
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 1.7e-22 113.2 102 60.8
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 6.4e-22 111.3 58 82.8
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 3.0e-19 102.4 67 68.7
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.1e-16 92.4 137 43.1
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.5e-15 90.1 70 62.9
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.0e-15 89.7 110 50.9
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.4e-13 82.8 53 73.6
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.4e-13 82.8 53 73.6
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 3.6e-09 68.9 34 88.2
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 9.0e-08 64.3 40 77.5
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 1.5e-07 63.5 132 31.1
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 2.6e-07 62.8 50 60.0
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 4.5e-07 62.0 132 31.1


User provided reference genes

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