Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1379.8 719 100.0
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1259.6 690 94.2
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1235.7 687 93.6
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1175.2 692 87.0
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1146.3 692 83.5
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1145.6 690 84.3
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1145.6 696 83.6
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1142.1 692 82.9
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 686 84.4
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1137.9 692 83.2
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 692 83.5
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1135.6 692 83.2
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1135.6 692 83.7
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1135.2 692 82.8
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1133.6 687 83.4
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1133.6 692 83.1
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1132.5 687 83.3
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 687 83.3
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 700 82.7
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1131.3 687 83.1
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1129.4 693 83.0
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1128.2 690 82.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1126.7 692 82.8
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1125.9 695 82.4
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1125.2 707 81.3
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1124.0 707 81.0
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1124.0 696 81.2
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 707 80.9
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1119.0 685 83.4
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1117.1 693 82.4
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1116.7 692 81.8
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1116.3 707 80.5
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1115.5 701 81.2
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1114.8 692 82.1
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 684 82.9
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 684 82.9
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 684 82.9
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 692 80.9
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 698 81.9
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 711 79.6
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1112.1 711 79.6
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1110.1 692 80.9
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1110.1 698 79.8
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1109.4 696 81.8
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1108.6 692 80.5
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1108.6 696 81.9
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1108.2 685 82.2
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1106.7 689 81.7
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1106.7 701 80.0
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1106.3 692 82.1
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1104.0 720 78.8
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1103.6 684 82.2
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1101.7 697 80.9
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1100.9 684 80.6
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1100.5 715 79.3
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1100.5 684 81.9
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1100.5 709 78.7
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1100.1 684 80.6
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1099.0 684 80.3
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1099.0 684 80.3
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1099.0 684 80.3
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1098.2 714 78.6
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1097.8 684 80.4
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1097.0 696 81.0
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1095.9 684 80.3
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1094.7 684 80.0
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1094.3 684 80.6
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1094.3 684 80.0
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1093.2 687 80.9
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1093.2 675 82.5
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1092.8 684 81.3
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1092.4 685 80.1
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1089.3 591 94.9
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1089.3 688 79.9
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1088.9 692 81.1
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1088.2 685 81.3
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1085.5 695 79.1
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1084.3 698 80.2
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1083.9 685 80.4
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1083.2 738 76.2
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1082.0 668 82.2
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1076.2 705 78.3
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1075.5 684 79.5
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 1.5e-311 1072.4 690 77.8
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 3.4e-311 1071.2 684 78.7
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 4.4e-311 1070.8 723 76.6
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 1.3e-310 1069.3 761 73.5
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 9.2e-309 1063.1 694 78.8
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 2.7e-308 1061.6 707 77.9
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 4.5e-308 1060.8 698 76.8
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 4.5e-308 1060.8 694 78.0
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.9e-306 1055.4 710 76.2
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 4.0e-304 1047.7 738 74.8
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 1.3e-302 1042.7 664 78.8
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 2.2e-302 1042.0 726 74.1
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.3e-299 1032.7 666 79.1
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 9.5e-298 1026.5 684 75.9
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 9.8e-295 1016.5 686 74.9
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 2.3e-291 1005.4 707 73.1
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 6.0e-284 980.7 736 68.3
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.5e-276 954.9 554 88.8
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.7e-273 944.5 631 77.7
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 4.0e-272 941.4 609 78.2
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 9.9e-271 936.8 689 68.2
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 9.9e-271 936.8 689 68.2
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.3e-267 926.4 697 65.7
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 3.4e-263 911.8 703 65.1
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.9e-263 910.2 584 78.1
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 7.4e-258 894.0 691 64.8
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 4.9e-254 881.3 566 77.6
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.8e-251 872.8 683 68.7
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 4.8e-249 864.8 589 75.4
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.5e-242 843.2 507 84.4
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.4e-240 836.6 676 67.6
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.1e-228 796.2 476 85.1
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.6e-220 770.0 681 57.7
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 5.2e-211 738.4 683 55.5
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 8.9e-195 684.5 423 79.0
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.9e-190 669.5 460 77.8
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.9e-150 536.2 328 78.4
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 5.6e-149 532.3 712 43.0
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.3e-137 494.6 761 36.9
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 8.7e-126 455.3 280 80.4
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 2.3e-118 430.6 385 59.7
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 2.3e-118 430.6 269 79.9
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.0e-118 430.3 270 78.1
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 1.1e-109 401.7 743 35.3
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.1e-107 395.2 233 82.4
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.7e-105 387.9 237 80.6
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.2e-102 376.3 261 77.8
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 8.8e-102 375.6 253 73.5
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 4.0e-94 350.1 247 76.1
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 2.7e-74 284.3 193 80.3
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.7e-74 284.3 182 74.7
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.6e-71 275.0 215 66.5
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 9.8e-69 265.8 148 83.8
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.3e-65 255.4 195 68.2
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 5.4e-59 233.4 192 69.8
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-57 228.4 155 65.2
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 7.6e-53 213.0 170 64.1
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.4e-51 208.8 167 65.3
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 3.0e-49 201.1 214 55.1
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 6.6e-49 199.9 180 65.0
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.6e-47 195.3 114 90.4
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 4.7e-47 193.7 493 28.0
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.2e-44 184.9 122 77.9
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.6e-42 178.7 111 87.4
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 2.8e-39 167.9 102 80.4
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.2e-37 162.5 111 74.8
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 7.6e-29 133.3 100 69.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.6e-26 125.6 100 65.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.6e-26 125.6 100 65.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 6.7e-25 120.2 139 51.1
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 3.4e-21 107.8 69 75.4
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.4e-21 107.8 81 67.9
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.4e-21 107.8 57 89.5
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 4.5e-21 107.5 62 79.0
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 4.9e-20 104.0 65 83.1
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 6.5e-20 103.6 77 66.2
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.9e-19 102.1 71 73.2
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 3.2e-19 101.3 59 79.7
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.6e-18 97.4 88 63.6
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.1e-16 92.8 103 53.4
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.7e-16 90.5 93 54.8
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 2.7e-10 71.6 78 48.7
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 3.6e-10 71.2 46 73.9
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.7e-08 63.9 51 66.7
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 7.4e-08 63.5 40 80.0
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.1e-06 59.7 45 64.4


User provided reference genes

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