Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047420 Amaranthus hybridus HOM05D005460 ORTHO05D018279 3.8e-134 481.5 240 100.0
AUR62032136 Chenopodium quinoa HOM05D005460 ORTHO05D008059 4.0e-75 285.4 240 60.4
EL10Ac5g11188 Beta vulgaris HOM05D005460 ORTHO05D008059 5.6e-69 265.0 241 59.8
Hund09954 Selenicereus undatus HOM05D005460 ORTHO05D008059 1.4e-56 223.8 244 51.2
AUR62039669 Chenopodium quinoa HOM05D005460 ORTHO05D008059 4.8e-52 208.8 190 55.8
Sc04g0003880 Simmondsia chinensis HOM05D005460 ORTHO05D008059 4.2e-40 169.1 245 40.8
Cc04_g08300 Coffea canephora HOM05D005460 ORTHO05D008059 2.5e-37 159.8 247 39.7
Lsat_1_v5_gn_4_113721 Lactuca sativa HOM05D005460 ORTHO05D008059 3.3e-37 159.5 251 39.4
TAR629G3051 Trochodendron aralioides HOM05D005460 ORTHO05D008059 9.6e-37 157.9 244 39.3
MSTRG.22948 Avicennia marina HOM05D005460 ORTHO05D008059 1.6e-36 157.1 240 39.2
CSS0025897 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 2.1e-36 156.8 244 38.9
GSVIVG01008151001 Vitis vinifera HOM05D005460 ORTHO05D008059 4.8e-36 155.6 224 40.6
Ciclev10018555m.g Citrus clementina HOM05D005460 ORTHO05D008059 2.0e-34 150.2 246 36.2
QL10p020708 Quercus lobata HOM05D005460 ORTHO05D008059 4.9e-33 145.6 265 36.2
Actinidia04798 Actinidia chinensis HOM05D005460 ORTHO05D008059 6.5e-33 145.2 246 38.2
HanXRQChr09g0270461 Helianthus annuus HOM05D005460 ORTHO05D008059 1.9e-32 143.7 245 38.0
Rhsim08G0141800 Rhododendron simsii HOM05D005460 ORTHO05D008059 9.3e-32 141.4 245 35.5
Sopen03g033860 Solanum pennellii HOM05D005460 ORTHO05D008059 4.6e-31 139.0 253 36.0
ECA232G2972 Erigeron canadensis HOM05D005460 ORTHO05D008059 6.0e-31 138.7 240 36.7
Nn3g17530 Nelumbo nucifera HOM05D005460 ORTHO05D008059 7.9e-31 138.3 242 35.5
Duzib068G0250 Durio zibethinus HOM05D005460 ORTHO05D008059 3.0e-30 136.3 236 37.3
FAN18G2313 Fragaria x ananassa HOM05D005460 ORTHO05D008059 3.0e-30 136.3 241 35.3
Solyc03g114780.3 Solanum lycopersicum HOM05D005460 ORTHO05D008059 3.9e-30 136.0 253 36.0
Thecc.03G107700 Theobroma cacao HOM05D005460 ORTHO05D008059 5.1e-30 135.6 235 36.6
FvH4_5g13410 Fragaria vesca HOM05D005460 ORTHO05D008059 8.7e-30 134.8 241 34.9
Eucgr.K02548 Eucalyptus grandis HOM05D005460 ORTHO05D008059 1.5e-29 134.0 246 35.0
Cfa017734 Carpinus fangiana HOM05D005460 ORTHO05D008059 3.3e-29 132.9 254 33.5
MELO3C017248.2 Cucumis melo HOM05D005460 ORTHO05D008059 3.3e-29 132.9 252 33.7
Lj1g0006842 Lotus japonicus HOM05D005460 ORTHO05D008059 3.3e-29 132.9 249 35.3
Gohir.D11G037400 Gossypium hirsutum HOM05D005460 ORTHO05D008059 4.3e-29 132.5 233 36.1
Phvul.009G203700 Phaseolus vulgaris HOM05D005460 ORTHO05D008059 4.3e-29 132.5 253 33.6
Medtr2g461560 Medicago truncatula HOM05D005460 ORTHO05D008059 5.7e-29 132.1 240 33.8
Gorai.007G040200 Gossypium raimondii HOM05D005460 ORTHO05D008059 7.4e-29 131.7 232 36.2
Gohir.A11G034000 Gossypium hirsutum HOM05D005460 ORTHO05D008059 1.3e-28 131.0 236 35.2
Glyma.06G206000 Glycine max HOM05D005460 ORTHO05D008059 3.7e-28 129.4 245 33.1
TPR.G14357 Trifolium pratense HOM05D005460 ORTHO05D008059 3.7e-28 129.4 248 32.3
Psat1g126760 Pisum sativum HOM05D005460 ORTHO05D008059 3.1e-27 126.3 240 32.9
MD14G1216300 Malus domestica HOM05D005460 ORTHO05D008059 1.5e-26 124.0 248 33.1
arahy.Tifrunner.gnm1.ann1.LBS82T Arachis hypogaea HOM05D005460 ORTHO05D008059 2.6e-26 123.2 260 33.8
Prupe.5G209800 Prunus persica HOM05D005460 ORTHO05D008059 3.4e-26 122.9 256 34.0
RcHm_v2.0_Chr7g0183721 Rosa chinensis HOM05D005460 ORTHO05D018279 4.5e-26 122.5 209 36.4
ClCG06G015450 Citrullus lanatus HOM05D005460 ORTHO05D008059 1.3e-25 120.9 252 32.1
FAN08G0483 Fragaria x ananassa HOM05D005460 ORTHO05D008059 1.3e-25 120.9 241 34.0
TWI60G0358 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 3.8e-25 119.4 241 31.1
TWI60G1488 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 3.8e-25 119.4 241 31.1
arahy.Tifrunner.gnm1.ann1.N0CKJ9 Arachis hypogaea HOM05D005460 ORTHO05D008059 8.5e-25 118.2 259 34.0
FAN13G3146 Fragaria x ananassa HOM05D005460 ORTHO05D008059 1.1e-24 117.9 241 33.6
PSO478G1652 Papaver somniferum HOM05D005460 ORTHO05D008059 1.1e-24 117.9 235 33.2
Sed0020336 Sechium edule HOM05D005460 ORTHO05D008059 1.9e-24 117.1 249 34.9
Nitab4.5_0005994g0060 Nicotiana tabacum HOM05D005460 ORTHO05D008059 2.5e-24 116.7 243 35.0
VMungo1309G0936 Vigna mungo HOM05D005460 ORTHO05D008059 3.2e-24 116.3 263 32.3
Cpa.g.sc3.237 Carica papaya HOM05D005460 ORTHO05D008059 2.1e-23 113.6 235 31.9
CsaV3_1G003350 Cucumis sativus L. HOM05D005460 ORTHO05D008059 2.1e-23 113.6 252 30.2
PGR031G2062 Punica granatum HOM05D005460 ORTHO05D008059 2.7e-23 113.2 248 30.6
Aqoxy3G00547_Aqoxy3G00548 Aquilegia oxysepala HOM05D005460 ORTHO05D008059 6.1e-23 112.1 237 34.6
Dinv07972 Davidia involucrata HOM05D005460 ORTHO05D008059 1.1e-21 107.8 193 34.2
Migut.I00363 Erythranthe guttata HOM05D005460 ORTHO05D008059 1.1e-21 107.8 252 31.0
MBI16_g07042_MAGBIO Magnolia biondii HOM05D005460 ORTHO05D008059 1.5e-21 107.5 291 27.5
Aa31LG3G18430 Aethionema arabicum HOM05D005460 ORTHO05D008059 1.3e-20 104.4 236 31.4
Potri.012G063500 Populus trichocarpa HOM05D005460 ORTHO05D008059 3.7e-20 102.8 237 32.9
THA.LOC104818356 Tarenaya hassleriana HOM05D005460 ORTHO05D008059 3.7e-20 102.8 231 31.2
Lj9A438G54 Lonicera japonica HOM05D005460 ORTHO05D008059 2.6e-18 96.7 141 44.0
COL.COLO4_27492 Corchorus olitorius HOM05D005460 ORTHO05D008059 3.4e-18 96.3 130 43.1
BcaB08g37287 Brassica carinata HOM05D005460 ORTHO05D008059 1.1e-16 91.3 230 29.6
ATR0827G052 Amborella trichopoda HOM05D005460 ORTHO05D008059 1.4e-16 90.9 299 26.4
HPP92_007735 Vanilla planifolia HOM05D005460 ORTHO05D008059 1.9e-16 90.5 238 29.4
Ca_02783_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 1.6e-15 87.4 191 29.3
BraA10t44905Z Brassica rapa HOM05D005460 ORTHO05D008059 7.9e-15 85.1 231 29.4
Peaxi162Scf00017g03272 Petunia axillaris HOM05D005460 ORTHO05D008059 7.9e-15 85.1 239 25.5
CANSAT80G0202 Cannabis sativa HOM05D005460 ORTHO05D008059 1.0e-14 84.7 161 29.8
Haze_18509 Corylus avellana HOM05D005460 ORTHO05D008059 1.0e-14 84.7 253 26.9
Hma1.2p1_2037F.1_g311970 Hydrangea macrophylla HOM05D005460 ORTHO05D018279 1.4e-14 84.3 157 32.5
Zm00001eb327130 Zea mays HOM05D005460 ORTHO05D008059 5.1e-14 82.4 178 32.0
BolC9t59631H Brassica oleracea HOM05D005460 ORTHO05D008059 6.7e-14 82.0 231 29.4
A10p28560 Brassica napus HOM05D005460 ORTHO05D008059 1.5e-13 80.9 231 28.6
Thhalv10012480m.g Eutrema salsugineum HOM05D005460 ORTHO05D008059 1.5e-13 80.9 235 28.9
Carub.0006s0699 Capsella rubella HOM05D005460 ORTHO05D008059 2.0e-13 80.5 88 47.7
C09p68840 Brassica napus HOM05D005460 ORTHO05D008059 2.6e-13 80.1 231 29.0
vmacro17638 Vaccinium macrocarpon HOM05D005460 ORTHO05D018279 7.4e-13 78.6 175 28.0
AT5G08110 Arabidopsis thaliana HOM05D005460 ORTHO05D008059 1.3e-12 77.8 110 42.7
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 2.2e-12 77.0 231 28.1
AL6G18480 Arabidopsis lyrata HOM05D005460 ORTHO05D008059 5.3e-11 72.4 121 35.5
SGA_v2.0_scaffold25G10948 Striga asiatica HOM05D005460 ORTHO05D008059 9.1e-11 71.6 258 26.0
SHI17426 Sapria himalayana HOM05D005460 ORTHO05D018279 2.0e-10 70.5 189 29.6
Os02g0111900 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 2.5e-08 63.5 78 41.0
AagrBONN_evm.TU.Sc2ySwM_344.3544 Anthoceros agrestis HOM05D005460 ORTHO05D008059 1.8e-06 57.4 149 27.5
Pp3c5_22230 Physcomitrium patens HOM05D005460 ORTHO05D008059 1.8e-06 57.4 86 43.0
CiPaw.15G113700 Carya illinoinensis HOM05D005460 ORTHO05D008059 3.9e-06 56.2 59 54.2


User provided reference genes

Program Settings