Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 2.9e-268 927.9 459 100.0
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 1.4e-225 786.2 459 83.2
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 1.8e-201 706.1 457 75.9
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 4.1e-193 678.3 459 71.7
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 5.3e-193 677.9 459 72.1
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 8.5e-191 670.6 459 71.2
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 4.2e-190 668.3 459 70.6
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 9.3e-190 667.2 459 70.8
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 6.1e-189 664.5 459 70.8
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 1.0e-188 663.7 460 69.8
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 6.7e-188 661.0 457 69.8
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 6.7e-188 661.0 459 70.4
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 2.5e-187 659.1 459 70.4
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 4.3e-187 658.3 459 71.0
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 1.3e-186 656.8 457 69.6
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 2.2e-186 656.0 459 69.9
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 2.8e-186 655.6 459 70.8
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 2.8e-186 655.6 459 69.5
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 8.2e-186 654.1 459 70.8
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 1.4e-185 653.3 459 71.2
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 3.1e-185 652.1 459 71.0
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 5.3e-185 651.4 459 70.4
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 6.9e-185 651.0 457 69.1
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 6.9e-185 651.0 459 68.8
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 2.6e-184 649.0 459 69.9
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 3.4e-184 648.7 438 70.5
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 3.4e-184 648.7 459 70.2
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 4.2e-182 641.7 458 68.1
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 3.6e-181 638.6 409 77.5
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 7.9e-181 637.5 494 65.0
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 1.4e-180 636.7 437 70.7
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 1.8e-180 636.3 459 67.8
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 2.3e-180 636.0 457 68.7
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 2.3e-180 636.0 410 75.1
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 8.8e-180 634.0 459 68.2
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 2.0e-179 632.9 442 69.2
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 4.4e-179 631.7 457 67.4
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 5.7e-179 631.3 457 66.7
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 7.4e-179 630.9 457 66.7
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 9.7e-179 630.6 457 67.6
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 1.3e-178 630.2 459 69.5
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 3.7e-178 628.6 459 68.2
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 1.4e-177 626.7 462 68.4
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 1.8e-177 626.3 459 67.1
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 4.1e-177 625.2 461 66.6
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 4.1e-177 625.2 459 66.9
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 5.3e-177 624.8 458 67.0
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 6.9e-177 624.4 459 67.1
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.5e-176 623.2 459 66.7
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 2.6e-176 622.5 459 67.3
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 5.9e-176 621.3 458 67.9
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 2.2e-175 619.4 457 65.9
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 3.8e-175 618.6 460 66.7
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 3.8e-175 618.6 457 65.9
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 5.0e-175 618.2 418 71.8
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.1e-174 617.1 439 68.3
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 3.2e-174 615.5 459 65.1
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 3.2e-174 615.5 458 65.9
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 4.2e-174 615.1 459 68.2
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 9.4e-174 614.0 460 67.0
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 1.2e-173 613.6 415 72.0
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 2.1e-173 612.8 458 65.7
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 6.1e-173 611.3 456 66.4
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 1.0e-172 610.5 465 65.8
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 2.3e-172 609.4 458 64.8
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 3.0e-172 609.0 431 68.2
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 5.2e-172 608.2 517 60.2
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 6.7e-172 607.8 459 64.7
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 1.5e-171 606.7 462 65.4
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 2.0e-171 606.3 466 65.2
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 7.4e-171 604.4 459 64.3
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 8.2e-170 600.9 411 71.8
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 1.1e-169 600.5 457 65.6
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 2.4e-169 599.4 462 66.2
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 3.2e-166 589.0 457 63.2
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 7.2e-166 587.8 459 62.3
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 9.4e-166 587.4 458 64.2
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 2.7e-165 585.9 457 64.3
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 1.0e-164 583.9 459 65.6
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 1.4e-164 583.6 459 64.9
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 1.2e-163 580.5 438 66.0
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 2.0e-163 579.7 458 64.0
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 7.5e-163 577.8 457 63.0
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 4.8e-162 575.1 459 63.0
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 1.4e-161 573.5 458 64.2
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 1.6e-160 570.1 458 62.7
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 2.0e-160 569.7 490 61.2
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 3.5e-160 568.9 457 61.9
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 3.5e-160 568.9 458 63.8
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 1.3e-159 567.0 461 63.3
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 1.5e-158 563.5 455 63.3
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 3.6e-157 558.9 385 71.4
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 2.0e-155 553.1 385 70.1
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 3.1e-153 545.8 413 64.9
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 1.9e-150 536.6 458 60.0
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 1.1e-142 510.8 366 67.8
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 5.2e-132 475.3 299 79.3
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 5.4e-129 465.3 465 51.4
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 2.5e-126 456.4 459 49.0
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 9.5e-126 454.5 376 61.7
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 5.1e-119 432.2 461 47.9
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 1.7e-114 417.2 462 52.6
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 8.4e-114 414.8 457 46.6
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 3.0e-111 406.4 347 59.4
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 2.1e-101 373.6 316 60.4
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 7.6e-99 365.2 381 50.1
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 1.3e-98 364.4 519 40.8
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 7.4e-86 322.0 466 40.8
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 1.1e-76 291.6 245 62.9
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 3.3e-70 270.0 206 60.7
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 1.5e-67 261.2 445 38.0
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 3.8e-66 256.5 225 56.4
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 6.1e-64 249.2 190 66.3
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 8.8e-39 165.6 299 35.1
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 1.2e-38 165.2 467 29.8
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 4.5e-35 153.3 104 69.2
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.6e-19 101.7 124 41.9
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 1.5e-09 68.6 319 22.9
Lj2g0022197 Lotus japonicus HOM05D004386 ORTHO05D005247 7.3e-09 66.2 381 24.4
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 1.8e-07 61.6 326 21.8
PGR102G2938 Punica granatum HOM05D000836 ORTHO05D000709 1.8e-07 61.6 137 29.9
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 2.3e-07 61.2 133 28.6
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 2.3e-07 61.2 133 28.6
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 3.1e-07 60.8 146 25.3
Nitab4.5_0000934g0230 Nicotiana tabacum HOM05D002634 ORTHO05D003100 3.1e-07 60.8 187 27.8
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 6.8e-07 59.7 214 25.7
Cpa.g.c29144.2 Carica papaya HOM05D000836 ORTHO05D000709 8.9e-07 59.3 316 21.5
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 8.9e-07 59.3 137 27.0
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 8.9e-07 59.3 137 27.0
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 1.2e-06 58.9 134 27.6
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 1.2e-06 58.9 173 28.9
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 1.5e-06 58.5 118 26.3
Dinv11944 Davidia involucrata HOM05D001610 ORTHO05D001585 2.0e-06 58.2 283 23.0
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 2.6e-06 57.8 183 26.2
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 3.4e-06 57.4 337 21.7
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 3.4e-06 57.4 114 27.2
Cre17.g710100 Chlamydomonas reinhardtii HOM05D005508 ORTHO05D006882 3.4e-06 57.4 127 33.1
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 3.4e-06 57.4 118 28.0
unitig_32.g11669 Utricularia gibba HOM05D000836 ORTHO05D000709 3.4e-06 57.4 323 19.5
Lsat_1_v5_gn_7_78061 Lactuca sativa HOM05D000347 ORTHO05D001997 4.4e-06 57.0 132 26.5
Manes.03G067700 Manihot esculenta HOM05D000836 ORTHO05D000709 4.4e-06 57.0 152 27.6
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 4.4e-06 57.0 380 21.3
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 7.5e-06 56.2 114 26.3
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 7.5e-06 56.2 114 26.3
Gohir.D07G176600 Gossypium hirsutum HOM05D002303 ORTHO05D006504 7.5e-06 56.2 118 28.0
Gorai.001G197400 Gossypium raimondii HOM05D002303 ORTHO05D006504 7.5e-06 56.2 118 28.0
Medtr1g011610 Medicago truncatula HOM05D000836 ORTHO05D000709 7.5e-06 56.2 315 19.7
Medtr6g005220 Medicago truncatula HOM05D004386 ORTHO05D005247 7.5e-06 56.2 281 24.9


User provided reference genes

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