Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g029140 Amaranthus hybridus HOM05D000809 ORTHO05D007733 1.7e-76 289.3 143 100.0
EL10Ac8g18530 Beta vulgaris HOM05D000809 ORTHO05D007733 2.7e-71 271.9 143 91.6
AUR62011020 Chenopodium quinoa HOM05D000809 ORTHO05D007733 2.7e-71 271.9 143 91.6
CANSAT56G3015 Cannabis sativa HOM05D000809 ORTHO05D007733 1.0e-70 270.0 143 90.2
COL.COLO4_34883 Corchorus olitorius HOM05D000809 ORTHO05D007733 1.4e-70 269.6 143 91.6
Actinidia32693 Actinidia chinensis HOM05D000809 ORTHO05D007733 3.9e-70 268.1 143 88.8
QL02p085975 Quercus lobata HOM05D000809 ORTHO05D007733 6.7e-70 267.3 143 89.5
GSVIVG01015424001 Vitis vinifera HOM05D000809 ORTHO05D007733 6.7e-70 267.3 142 90.1
Gohir.D05G022766 Gossypium hirsutum HOM05D000809 ORTHO05D007733 8.8e-70 266.9 143 90.9
Gohir.D05G022900 Gossypium hirsutum HOM05D000809 ORTHO05D007733 8.8e-70 266.9 143 90.9
Gorai.009G023100 Gossypium raimondii HOM05D000809 ORTHO05D007733 8.8e-70 266.9 143 90.9
PGR102G2432 Punica granatum HOM05D000809 ORTHO05D007733 1.1e-69 266.5 142 89.4
vmacro20667 Vaccinium macrocarpon HOM05D000809 ORTHO05D007733 2.0e-69 265.8 143 88.1
Gohir.A05G021400 Gossypium hirsutum HOM05D000809 ORTHO05D007733 3.3e-69 265.0 143 90.2
Nn2g11810 Nelumbo nucifera HOM05D000809 ORTHO05D007733 3.3e-69 265.0 143 88.8
Rhsim01G0091800 Rhododendron simsii HOM05D000809 ORTHO05D007733 3.3e-69 265.0 142 88.7
Ciclev10007988m.g Citrus clementina HOM05D000809 ORTHO05D007733 5.7e-69 264.2 143 87.4
Peaxi162Scf00546g00322 Petunia axillaris HOM05D000809 ORTHO05D007733 7.4e-69 263.8 142 89.4
Duzib168G1885 Durio zibethinus HOM05D000809 ORTHO05D007733 9.7e-69 263.5 143 88.8
Manes.16G070800 Manihot esculenta HOM05D000809 ORTHO05D007733 9.7e-69 263.5 142 88.7
Thecc.09G114200 Theobroma cacao HOM05D000809 ORTHO05D007733 9.7e-69 263.5 143 89.5
Prupe.7G227600 Prunus persica HOM05D000809 ORTHO05D007733 1.3e-68 263.1 142 87.3
CAN.G1710.9 Capsicum annuum HOM05D000809 ORTHO05D007733 1.7e-68 262.7 142 88.0
Cfa003287 Carpinus fangiana HOM05D000809 ORTHO05D007733 1.7e-68 262.7 143 86.7
TAR624G0463 Trochodendron aralioides HOM05D000809 ORTHO05D007733 1.7e-68 262.7 143 87.4
Aqoxy7G01822 Aquilegia oxysepala HOM05D000809 ORTHO05D007733 2.2e-68 262.3 143 87.4
Cpa.g.sc23.132 Carica papaya HOM05D000809 ORTHO05D007733 2.8e-68 261.9 143 88.8
Haze_25686 Corylus avellana HOM05D000809 ORTHO05D007733 2.8e-68 261.9 143 87.4
Nitab4.5_0001672g0130 Nicotiana tabacum HOM05D000809 ORTHO05D007733 3.7e-68 261.5 142 87.3
CSS0004763 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007733 4.8e-68 261.2 143 88.1
CSS0005642 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007733 4.8e-68 261.2 143 88.1
FvH4_1g05310 Fragaria vesca HOM05D000809 ORTHO05D007733 4.8e-68 261.2 139 89.2
FAN19G0453 Fragaria x ananassa HOM05D000809 ORTHO05D007733 4.8e-68 261.2 139 89.2
FAN26G0422 Fragaria x ananassa HOM05D000809 ORTHO05D007733 4.8e-68 261.2 139 89.2
FAN26G2813 Fragaria x ananassa HOM05D000809 ORTHO05D007733 4.8e-68 261.2 139 89.2
Potri.018G076600 Populus trichocarpa HOM05D000809 ORTHO05D007733 4.8e-68 261.2 143 85.3
CiPaw.03G234800 Carya illinoinensis HOM05D000809 ORTHO05D007733 8.2e-68 260.4 143 86.7
AUR62033393 Chenopodium quinoa HOM05D000809 ORTHO05D007733 8.2e-68 260.4 137 91.2
RcHm_v2.0_Chr2g0091011 Rosa chinensis HOM05D000809 ORTHO05D007733 8.2e-68 260.4 139 88.5
CDE06G2677 Ceratophyllum demersum HOM05D000809 ORTHO05D007733 1.1e-67 260.0 143 86.0
MD15G1189200 Malus domestica HOM05D000809 ORTHO05D007733 1.4e-67 259.6 142 86.6
MSTRG.10680 Avicennia marina HOM05D000809 ORTHO05D007733 2.4e-67 258.8 142 86.6
Atru.chr7.1304 Acer truncatum HOM05D000809 ORTHO05D007733 3.1e-67 258.5 142 85.9
CDE04G2267 Ceratophyllum demersum HOM05D000809 ORTHO05D007733 3.1e-67 258.5 143 86.7
Solyc12g007010.2 Solanum lycopersicum HOM05D000809 ORTHO05D007733 3.1e-67 258.5 142 85.9
Sopen12g002980 Solanum pennellii HOM05D000809 ORTHO05D007733 3.1e-67 258.5 142 85.9
TWI34G1334 Tripterygium wilfordii HOM05D000809 ORTHO05D007733 3.1e-67 258.5 142 85.9
ECA238G4585 Erigeron canadensis HOM05D000809 ORTHO05D007733 5.3e-67 257.7 143 86.0
Lsat_1_v5_gn_8_93401 Lactuca sativa HOM05D000809 ORTHO05D007733 5.3e-67 257.7 142 87.3
Nitab4.5_0003537g0040 Nicotiana tabacum HOM05D000809 ORTHO05D007733 5.3e-67 257.7 142 86.6
PSO063G5751 Papaver somniferum HOM05D000809 ORTHO05D007733 5.3e-67 257.7 143 86.7
PSO782G1122 Papaver somniferum HOM05D000809 ORTHO05D007733 5.3e-67 257.7 143 86.7
arahy.Tifrunner.gnm1.ann1.JACH1V Arachis hypogaea HOM05D000809 ORTHO05D007733 6.9e-67 257.3 143 85.3
HanXRQChr05g0137991 Helianthus annuus HOM05D000809 ORTHO05D007733 6.9e-67 257.3 143 86.7
TWI63G1087 Tripterygium wilfordii HOM05D000809 ORTHO05D007733 6.9e-67 257.3 142 85.9
TAR626G0858 Trochodendron aralioides HOM05D000809 ORTHO05D007733 9.1e-67 256.9 143 84.6
CsaV3_1G030840 Cucumis sativus L. HOM05D000809 ORTHO05D007733 1.2e-66 256.5 142 85.2
PGSC0003DMG400000383 Solanum tuberosum HOM05D000809 ORTHO05D007733 1.2e-66 256.5 142 85.2
MELO3C025316.2 Cucumis melo HOM05D000809 ORTHO05D007733 1.5e-66 256.1 142 85.2
THA.LOC104808749 Tarenaya hassleriana HOM05D000809 ORTHO05D007733 1.5e-66 256.1 141 85.8
Zm00001eb089070 Zea mays HOM05D000809 ORTHO05D007733 1.5e-66 256.1 143 84.6
arahy.Tifrunner.gnm1.ann1.G2DL39 Arachis hypogaea HOM05D000809 ORTHO05D007733 2.0e-66 255.8 143 85.3
Glyma.09G187800 Glycine max HOM05D000809 ORTHO05D007733 2.6e-66 255.4 143 86.0
ATR0037G048 Amborella trichopoda HOM05D000809 ORTHO05D007733 3.4e-66 255.0 141 85.1
Nn8g39257 Nelumbo nucifera HOM05D000809 ORTHO05D007733 4.5e-66 254.6 143 86.0
SalBow1G2443 Salvia bowleyana HOM05D000809 ORTHO05D007733 4.5e-66 254.6 141 85.8
Cc06_g09380 Coffea canephora HOM05D000809 ORTHO05D007733 7.7e-66 253.8 142 84.5
Glyma.07G089200 Glycine max HOM05D000809 ORTHO05D007733 7.7e-66 253.8 143 85.3
Oeu000378.3 Olea europaea HOM05D000809 ORTHO05D007733 1.7e-65 252.7 141 85.1
C07p56430 Brassica napus HOM05D000809 ORTHO05D007733 2.2e-65 252.3 141 85.1
BolC7t46122H Brassica oleracea HOM05D000809 ORTHO05D007733 2.2e-65 252.3 141 85.1
Ca_25514_v3 Cicer arietinum L. HOM05D000809 ORTHO05D007733 2.2e-65 252.3 138 86.2
Sp3g24440 Schrenkiella parvula HOM05D000809 ORTHO05D007733 2.2e-65 252.3 141 85.1
SpUn0651_0010 Schrenkiella parvula HOM05D000809 ORTHO05D007733 2.2e-65 252.3 141 85.1
Lj7C645G9 Lonicera japonica HOM05D000809 ORTHO05D007733 2.9e-65 251.9 143 85.3
SGA_v2.0_scaffold109G31030 Striga asiatica HOM05D000809 ORTHO05D007733 2.9e-65 251.9 142 83.8
Phvul.004G160900 Phaseolus vulgaris HOM05D000809 ORTHO05D007733 3.8e-65 251.5 139 85.6
BcaC06g32603 Brassica carinata HOM05D000809 ORTHO05D007733 5.0e-65 251.1 141 84.4
Eucgr.C03953 Eucalyptus grandis HOM05D000809 ORTHO05D007733 5.0e-65 251.1 142 84.5
Aa31LG8G11120 Aethionema arabicum HOM05D000809 ORTHO05D007733 6.5e-65 250.8 141 84.4
Thhalv10002483m.g Eutrema salsugineum HOM05D000809 ORTHO05D007733 6.5e-65 250.8 141 84.4
unitig_899.g15426 Utricularia gibba HOM05D000809 ORTHO05D007733 6.5e-65 250.8 142 82.4
Medtr6g086600 Medicago truncatula HOM05D000809 ORTHO05D007733 8.5e-65 250.4 138 87.0
A03p58410 Brassica napus HOM05D000809 ORTHO05D007733 1.1e-64 250.0 141 83.7
BraA03t14902Z Brassica rapa HOM05D000809 ORTHO05D007733 1.1e-64 250.0 141 83.7
Lj2g0016022 Lotus japonicus HOM05D000809 ORTHO05D007733 1.1e-64 250.0 142 83.1
Sabra18G0064600 Salix brachista HOM05D000809 ORTHO05D007733 1.1e-64 250.0 152 78.9
HPP92_006444 Vanilla planifolia HOM05D000809 ORTHO05D007733 2.5e-64 248.8 143 83.9
TPR.G31450 Trifolium pratense HOM05D000809 ORTHO05D007733 3.2e-64 248.4 138 84.8
VMungo0464G1974 Vigna mungo HOM05D000809 ORTHO05D007733 3.2e-64 248.4 139 85.6
Carub.0003s2473 Capsella rubella HOM05D000809 ORTHO05D007733 4.2e-64 248.1 141 83.0
CARHR100520 Cardamine hirsuta HOM05D000809 ORTHO05D007733 4.2e-64 248.1 141 83.0
Sed0012141 Sechium edule HOM05D000809 ORTHO05D007733 4.2e-64 248.1 142 82.4
ClCG06G010380 Citrullus lanatus HOM05D000809 ORTHO05D007733 5.5e-64 247.7 153 79.1
Lalb_Chr24g0397641 Lupinus albus HOM05D000809 ORTHO05D007733 5.5e-64 247.7 143 81.8
DCAR_012086 Daucus carota HOM05D000809 ORTHO05D007733 9.4e-64 246.9 143 82.5
AL3G39860 Arabidopsis lyrata HOM05D000809 ORTHO05D007733 2.7e-63 245.4 141 82.3
AT3G24430 Arabidopsis thaliana HOM05D000809 ORTHO05D007733 2.7e-63 245.4 141 82.3
Migut.K00460 Erythranthe guttata HOM05D000809 ORTHO05D007733 3.6e-63 245.0 142 82.4
SEGI_18085 Sequoiadendron giganteum HOM05D000809 ORTHO05D007733 1.8e-62 242.7 143 79.7
Psat1g039560 Pisum sativum HOM05D000809 ORTHO05D007733 5.2e-62 241.1 138 82.6
Pp3c19_20070 Physcomitrium patens HOM05D000809 ORTHO05D007733 1.2e-58 229.9 143 73.4
Sc08g0007210 Simmondsia chinensis HOM05D000809 ORTHO05D007733 2.0e-58 229.2 125 88.0
Eucgr.C04130 Eucalyptus grandis HOM05D000809 ORTHO05D007733 5.9e-58 227.6 141 78.7
SMO118G0383 Selaginella moellendorffii HOM05D000809 ORTHO05D007733 1.0e-57 226.9 141 73.8
MD02G1056300 Malus domestica HOM05D000809 ORTHO05D007733 1.7e-57 226.1 142 78.2
Mapoly0100s0060 Marchantia polymorpha HOM05D000809 ORTHO05D007733 2.2e-57 225.7 142 71.8
Hund09189 Selenicereus undatus HOM05D000809 ORTHO05D007733 3.6e-55 218.4 154 72.1
RcHm_v2.0_Chr3g0496131 Rosa chinensis HOM05D000809 ORTHO05D007733 1.5e-53 213.0 126 81.7
CBR_g30185 Chara braunii HOM05D000809 ORTHO05D007733 2.6e-53 212.2 139 70.5
Os01g0719700 Oryza sativa ssp. japonica HOM05D000809 ORTHO05D007733 3.0e-46 188.7 101 86.1
Eucgr.C03960 Eucalyptus grandis HOM05D000809 ORTHO05D007733 4.0e-46 188.3 111 81.1
Actinidia07419 Actinidia chinensis HOM05D000809 ORTHO05D007733 3.7e-44 181.8 146 67.1
Pp3c8_23290 Physcomitrium patens HOM05D000809 ORTHO05D007733 2.5e-40 169.1 140 58.6
PRCOL_00006186 Prasinoderma coloniale HOM05D000809 ORTHO05D007733 7.8e-26 120.9 154 42.9
AagrBONN_evm.TU.Sc2ySwM_344.1144 Anthoceros agrestis HOM05D009372 ORTHO05D013436 3.9e-25 118.6 63 81.0
Cre01.g045902 Chlamydomonas reinhardtii HOM05D000809 ORTHO05D007733 5.0e-25 118.2 139 46.8
Eucgr.C04131 Eucalyptus grandis HOM05D000809 ORTHO05D007733 5.6e-24 114.8 55 90.9
Eucgr.C03955 Eucalyptus grandis HOM05D000809 ORTHO05D007733 1.4e-22 110.2 70 77.1
Gorai.001G260200 Gossypium raimondii HOM05D000809 ORTHO05D016264 2.2e-20 102.8 102 52.0
Gohir.A12G059950 Gossypium hirsutum HOM05D000809 ORTHO05D016264 1.1e-19 100.5 102 51.0
Gohir.D10G166101 Gossypium hirsutum HOM05D000809 ORTHO05D016264 1.1e-19 100.5 102 51.0
Oeu013437.1 Olea europaea HOM05D000396 ORTHO05D007733 4.6e-18 95.1 60 76.7
AagrBONN_evm.TU.Sc2ySwM_187.2 Anthoceros agrestis HOM05D009372 ORTHO05D013436 3.0e-17 92.4 48 81.2
MCO05G106 Micromonas commoda HOM05D000809 ORTHO05D007733 1.9e-16 89.7 145 36.6
AagrBONN_evm.TU.Sc2ySwM_340.881 Anthoceros agrestis HOM05D000809 ORTHO05D023486 1.1e-14 84.0 42 81.0
AagrBONN_evm.TU.Sc2ySwM_344.2654 Anthoceros agrestis HOM05D000809 ORTHO05D023486 1.4e-11 73.6 37 81.1
AagrBONN_evm.TU.Sc2ySwM_340.840 Anthoceros agrestis HOM05D009372 ORTHO05D023486 2.1e-10 69.7 37 78.4
Dinv36606 Davidia involucrata HOM05D000809 ORTHO05D007733 3.5e-10 68.9 41 80.5
Gohir.D05G069650 Gossypium hirsutum HOM05D000809 ORTHO05D016264 4.6e-10 68.6 35 80.0
RcHm_v2.0_Chr2g0147101 Rosa chinensis HOM05D000809 ORTHO05D007733 6.2e-07 58.2 32 84.4


User provided reference genes

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