Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 6.0e-213 743.8 351 100.0
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.6e-136 490.0 439 57.6
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 8.3e-130 467.6 273 85.3
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 2.2e-122 443.0 439 54.2
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 1.0e-119 434.1 416 54.1
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 4.3e-118 428.7 434 51.8
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 4.3e-118 428.7 434 51.2
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 7.3e-118 427.9 434 50.7
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 9.5e-118 427.6 429 51.7
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 9.5e-118 427.6 429 51.7
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 3.6e-117 425.6 434 50.5
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 1.1e-116 424.1 434 50.9
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 1.4e-116 423.7 438 51.4
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 3.1e-116 422.5 434 50.2
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 4.0e-116 422.2 435 51.0
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 6.8e-116 421.4 434 50.2
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 8.9e-116 421.0 434 50.2
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 1.2e-115 420.6 429 51.5
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 1.2e-115 420.6 434 50.5
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.6e-115 419.5 434 50.2
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 4.4e-115 418.7 434 50.7
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 5.8e-115 418.3 447 49.7
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 5.8e-115 418.3 477 48.6
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 2.2e-114 416.4 434 50.5
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.9e-114 416.0 434 49.8
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 3.7e-114 415.6 434 49.5
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 3.7e-114 415.6 439 49.0
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 3.7e-114 415.6 443 49.0
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 8.3e-114 414.5 434 50.5
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 8.3e-114 414.5 433 50.1
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 3.2e-113 412.5 434 49.3
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 3.2e-113 412.5 408 52.0
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 3.2e-113 412.5 434 48.8
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 4.1e-113 412.1 434 50.0
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 4.1e-113 412.1 435 49.7
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 7.1e-113 411.4 434 50.2
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 7.1e-113 411.4 434 50.2
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 9.2e-113 411.0 434 49.8
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 2.1e-112 409.8 435 49.4
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 1.0e-111 407.5 434 50.0
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.7e-111 406.8 434 49.8
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 2.3e-111 406.4 434 49.1
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 2.3e-111 406.4 434 48.8
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 2.3e-111 406.4 434 49.3
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 5.1e-111 405.2 438 48.6
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 5.1e-111 405.2 438 48.2
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 5.1e-111 405.2 433 48.5
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 1.5e-110 403.7 434 48.4
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.5e-110 403.7 434 49.1
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.9e-110 403.3 429 48.7
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 2.5e-110 402.9 435 49.7
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 2.5e-110 402.9 435 49.9
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 2.5e-110 402.9 435 49.7
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 2.5e-110 402.9 434 49.1
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 2.5e-110 402.9 421 49.2
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 2.5e-110 402.9 429 48.7
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 3.3e-110 402.5 435 49.9
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 4.3e-110 402.1 435 49.0
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 2.1e-109 399.8 434 47.9
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 2.8e-109 399.4 438 47.0
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 3.6e-109 399.1 435 49.7
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 4.7e-109 398.7 414 51.0
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 6.2e-109 398.3 418 50.2
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 8.1e-109 397.9 419 50.6
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 1.1e-108 397.5 436 49.3
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 1.4e-108 397.1 421 48.5
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 1.4e-108 397.1 432 50.0
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 1.8e-108 396.7 461 46.6
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 2.4e-108 396.4 436 48.6
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 2.4e-108 396.4 432 49.1
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 2.4e-108 396.4 441 47.4
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 3.1e-108 396.0 419 50.4
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 3.1e-108 396.0 436 48.6
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 3.1e-108 396.0 436 48.2
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 8.9e-108 394.4 446 48.2
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 2.0e-107 393.3 440 47.7
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 2.6e-107 392.9 434 47.0
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 2.6e-107 392.9 436 48.6
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 5.8e-107 391.7 434 49.1
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 5.8e-107 391.7 433 49.0
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 1.3e-106 390.6 434 48.8
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 1.3e-106 390.6 436 48.2
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 1.3e-106 390.6 436 48.2
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 1.3e-106 390.6 436 48.2
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.9e-106 389.4 434 48.6
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.1e-105 387.5 434 45.9
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 1.4e-105 387.1 418 48.8
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 4.2e-105 385.6 450 45.6
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.6e-104 383.6 435 46.9
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.6e-104 383.6 435 46.9
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 2.7e-104 382.9 404 50.7
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 3.5e-104 382.5 477 44.0
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 2.3e-103 379.8 434 46.1
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 2.3e-103 379.8 434 47.0
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 5.1e-103 378.6 430 47.2
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.1e-102 377.5 405 50.1
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 3.3e-102 375.9 478 44.1
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.4e-100 370.5 429 47.6
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 4.0e-100 369.0 434 44.7
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 1.5e-99 367.1 419 47.7
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 8.4e-98 361.3 370 51.1
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.7e-95 353.6 398 48.0
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.3e-93 347.4 415 46.5
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.1e-92 344.4 418 44.0
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.8e-92 343.6 271 64.2
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 5.3e-92 342.0 431 41.3
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 2.0e-91 340.1 375 49.1
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 3.8e-90 335.9 454 41.0
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 4.9e-90 335.5 459 42.3
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 4.9e-90 335.5 393 47.8
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.5e-86 323.9 417 43.2
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 1.5e-86 323.9 273 57.1
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 3.3e-86 322.8 271 58.3
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 5.6e-86 322.0 271 58.3
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 5.6e-86 322.0 472 40.7
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 1.3e-85 320.9 435 40.5
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 1.6e-85 320.5 271 56.8
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 2.4e-84 316.6 408 45.1
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 3.1e-84 316.2 366 47.0
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 1.5e-83 313.9 271 55.4
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 4.5e-83 312.4 444 39.9
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.9e-78 297.0 281 52.0
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.8e-77 292.4 270 51.9
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.1e-76 289.3 270 51.5
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.1e-76 289.3 316 49.1
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 2.0e-75 287.0 240 57.9
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 5.5e-73 278.9 371 42.3
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 6.1e-72 275.4 210 61.9
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 1.9e-65 253.8 363 40.5
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 3.1e-60 236.5 431 34.1
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 5.5e-57 225.7 428 32.2
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 9.4e-57 224.9 449 32.5
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.6e-56 224.2 388 37.1
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 2.0e-54 217.2 271 46.1
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.8e-53 213.4 398 35.4
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 5.3e-52 209.1 359 38.2
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 4.5e-51 206.1 269 42.8
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.1e-49 201.4 397 30.7
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 8.2e-45 185.3 89 94.4
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 4.5e-43 179.5 450 29.6
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 1.7e-29 134.4 89 66.3
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 2.2e-29 134.0 89 68.5
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 6.3e-29 132.5 89 67.4
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 3.1e-28 130.2 88 67.0
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.2e-27 128.3 85 70.6
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.0e-27 127.5 89 65.2
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.0e-27 127.5 89 65.2
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 4.5e-27 126.3 89 66.3
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 5.0e-26 122.9 89 62.9
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 8.6e-26 122.1 89 62.9
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 9.5e-25 118.6 77 68.8
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 4.0e-23 113.2 90 61.1
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 2.6e-22 110.5 125 48.8
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 9.8e-22 108.6 76 65.8
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.7e-21 107.8 50 96.0
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 1.7e-21 107.8 87 55.2
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 1.1e-20 105.1 73 67.1
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 1.8e-20 104.4 74 66.2
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 1.8e-20 104.4 74 66.2
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 6.8e-15 85.9 60 63.3
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 6.6e-10 69.3 63 54.0
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 4.3e-09 66.6 60 53.3
Ciclev10019710m.g Citrus clementina HOM05D000645 ORTHO05D000494 2.0e-06 57.8 74 37.8
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 2.0e-06 57.8 35 74.3


User provided reference genes

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