Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1392.9 673 100.0
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1286.9 648 95.1
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1284.6 648 94.8
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1250.7 669 90.0
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1249.6 648 92.1
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1247.3 649 92.0
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1213.7 647 89.8
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1202.6 647 88.7
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1190.3 649 86.6
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1189.1 645 86.8
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 648 86.4
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1187.6 649 86.0
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1187.2 646 87.0
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1185.2 650 86.3
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1184.5 648 87.0
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1184.1 649 86.7
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1184.1 645 86.7
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1183.7 648 86.9
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1183.7 645 86.8
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 649 86.3
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1182.2 648 86.6
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1182.2 651 87.7
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 648 85.6
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 645 87.0
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1181.0 648 87.5
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1181.0 647 86.9
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1179.9 645 87.0
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1179.5 653 85.3
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1179.1 648 86.9
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1177.9 648 86.1
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 643 86.8
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1177.2 647 86.4
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 650 86.3
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1175.6 648 86.1
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1173.7 648 84.9
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1173.3 648 86.6
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1172.1 645 85.7
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1171.8 648 85.6
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 645 85.7
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1170.6 648 85.8
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1170.6 648 86.3
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 647 87.0
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 650 86.6
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 647 86.1
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1168.3 647 85.8
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1168.3 645 85.6
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1167.5 648 85.8
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1167.5 650 85.7
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1167.1 650 85.7
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1166.0 648 84.7
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1165.6 648 84.6
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1165.2 643 86.0
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1164.8 665 84.1
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1162.9 651 84.6
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 660 83.6
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 651 84.5
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1159.4 651 84.6
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1158.3 647 85.3
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 647 84.5
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 643 85.5
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1156.7 665 83.2
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1156.0 651 84.2
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 645 85.1
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 610 90.3
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 645 85.9
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 647 84.5
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 622 88.9
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 647 84.4
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 647 84.4
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 641 86.3
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1153.3 646 84.2
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1152.9 645 85.0
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1148.7 645 84.3
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1147.1 647 84.1
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1144.8 643 85.4
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1144.4 649 83.8
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1144.4 648 84.7
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 643 84.6
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 648 83.8
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1142.5 602 89.9
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1140.9 648 83.3
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1140.9 648 84.3
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1140.2 649 83.4
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1139.8 643 84.4
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1139.0 648 84.0
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 645 83.6
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1135.2 648 84.0
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1133.6 652 82.7
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1132.1 646 84.1
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1130.9 641 83.9
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1130.9 641 83.9
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1127.9 641 83.9
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1126.7 641 83.6
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1126.3 641 83.8
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1124.0 649 83.8
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1123.6 715 76.4
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1112.1 602 87.7
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1109.0 642 82.4
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1104.7 649 81.4
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1100.9 642 81.6
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1100.5 594 88.6
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1090.9 647 80.7
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1079.3 643 81.6
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 1.7e-309 1065.4 649 79.0
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 6.4e-304 1047.0 674 75.2
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 1.7e-301 1038.9 583 83.7
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 1.2e-299 1032.7 540 89.8
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 1.6e-299 1032.3 595 82.2
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 2.3e-298 1028.5 575 84.0
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 1.4e-295 1019.2 591 81.9
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.6e-289 998.4 563 82.8
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.4e-287 991.9 554 83.2
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 7.8e-286 986.9 613 78.5
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 3.7e-251 871.7 475 86.1
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 3.3e-228 795.4 513 73.5
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 2.7e-201 706.1 395 85.8
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 7.5e-196 688.0 395 83.3
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 1.9e-191 673.3 585 59.1
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 6.7e-144 515.4 266 90.6
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 4.8e-126 456.1 551 48.1
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 8.0e-73 279.3 217 63.6
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 7.8e-68 262.7 125 94.4
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 4.2e-45 187.2 107 83.2
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.3e-41 175.6 151 57.0
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 6.2e-41 173.3 96 85.4
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 4.9e-38 163.7 150 60.0
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.6e-20 105.5 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.8e-19 102.1 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 2.4e-08 65.1 32 93.8


User provided reference genes

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