Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g208530 Amaranthus hybridus HOM05D000032 ORTHO05D021207 8.4e-61 236.9 124 100.0
Ah.07g208540 Amaranthus hybridus HOM05D000032 ORTHO05D004313 1.1e-36 156.8 92 94.6
EL10Ac3g05767 Beta vulgaris HOM05D000032 ORTHO05D004313 2.4e-23 112.5 84 76.2
Hund11790 Selenicereus undatus HOM05D000032 ORTHO05D004313 5.9e-22 107.8 113 61.9
Ah.07g208430 Amaranthus hybridus HOM05D000032 ORTHO05D004313 1.3e-21 106.7 110 58.2
TWI38G0913 Tripterygium wilfordii HOM05D000032 ORTHO05D004313 3.2e-20 102.1 124 54.0
PGSC0003DMG400027958 Solanum tuberosum HOM05D000032 ORTHO05D004313 1.2e-19 100.1 85 71.8
Sc25g0000260 Simmondsia chinensis HOM05D000032 ORTHO05D004313 3.6e-19 98.6 110 59.1
Solyc06g035450.4 Solanum lycopersicum HOM05D000032 ORTHO05D004313 6.1e-19 97.8 85 70.6
Sopen06g011210 Solanum pennellii HOM05D000032 ORTHO05D004313 6.1e-19 97.8 85 70.6
Nitab4.5_0001341g0060 Nicotiana tabacum HOM05D000032 ORTHO05D004313 1.4e-18 96.7 85 63.5
Nitab4.5_0007841g0010 Nicotiana tabacum HOM05D000032 ORTHO05D004313 1.8e-18 96.3 85 63.5
Migut.F01166 Erythranthe guttata HOM05D000032 ORTHO05D004313 5.2e-18 94.7 85 65.9
CAN.G28.16 Capsicum annuum HOM05D000032 ORTHO05D004313 1.2e-17 93.6 84 63.1
MSTRG.118 Avicennia marina HOM05D000032 ORTHO05D004313 2.6e-17 92.4 84 59.5
Dinv28522 Davidia involucrata HOM05D000032 ORTHO05D004313 5.7e-17 91.3 94 58.5
Lj8A35T79 Lonicera japonica HOM05D000032 ORTHO05D004313 7.5e-17 90.9 131 47.3
Peaxi162Scf01178g00115 Petunia axillaris HOM05D000032 ORTHO05D004313 7.5e-17 90.9 84 64.3
AUR62021290 Chenopodium quinoa HOM05D000032 ORTHO05D004313 1.3e-16 90.1 88 61.4
Hund04660 Selenicereus undatus HOM05D000032 ORTHO05D004313 3.7e-16 88.6 87 65.5
Actinidia31796 Actinidia chinensis HOM05D000032 ORTHO05D004313 4.8e-16 88.2 117 49.6
Atru.chr11.44 Acer truncatum HOM05D000032 ORTHO05D004313 6.3e-16 87.8 111 52.3
Eucgr.K00136 Eucalyptus grandis HOM05D000032 ORTHO05D004313 8.3e-16 87.4 84 60.7
CANSAT21G1573 Cannabis sativa HOM05D000032 ORTHO05D004313 1.1e-15 87.0 95 58.9
TWI39G0408 Tripterygium wilfordii HOM05D000032 ORTHO05D004313 1.4e-15 86.7 87 56.3
TAR374G0375 Trochodendron aralioides HOM05D000032 ORTHO05D004313 1.4e-15 86.7 78 61.5
Rhsim03G0173200 Rhododendron simsii HOM05D000032 ORTHO05D004313 1.8e-15 86.3 109 50.5
SGA_v2.0_scaffold10G05448 Striga asiatica HOM05D000032 ORTHO05D004313 2.4e-15 85.9 64 67.2
vmacro09882 Vaccinium macrocarpon HOM05D000032 ORTHO05D004313 2.4e-15 85.9 84 59.5
AUR62016081 Chenopodium quinoa HOM05D000032 ORTHO05D004313 3.1e-15 85.5 88 60.2
Nn4g26453 Nelumbo nucifera HOM05D000032 ORTHO05D004313 3.1e-15 85.5 94 54.3
PGR142G1914 Punica granatum HOM05D000032 ORTHO05D004313 5.4e-15 84.7 88 60.2
CSS0014805 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D004313 7.0e-15 84.3 94 56.4
CSS0037420 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D004313 7.0e-15 84.3 94 56.4
PGSC0003DMG400031016 Solanum tuberosum HOM05D000032 ORTHO05D004313 1.2e-14 83.6 53 75.5
Cc02_g03740 Coffea canephora HOM05D000032 ORTHO05D004313 1.6e-14 83.2 88 58.0
Migut.F00412 Erythranthe guttata HOM05D000032 ORTHO05D004313 1.6e-14 83.2 102 50.0
THA.LOC104824842 Tarenaya hassleriana HOM05D000032 ORTHO05D004313 1.6e-14 83.2 84 58.3
TAR629G0515 Trochodendron aralioides HOM05D000032 ORTHO05D004313 1.6e-14 83.2 97 54.6
Sopen03g003010 Solanum pennellii HOM05D000032 ORTHO05D004313 2.0e-14 82.8 51 78.4
Atru.chr1.608 Acer truncatum HOM05D000032 ORTHO05D004313 2.7e-14 82.4 111 47.7
HanXRQChr14g0461911 Helianthus annuus HOM05D000032 ORTHO05D004313 2.7e-14 82.4 91 49.5
Zm00001eb103030 Zea mays HOM05D000032 ORTHO05D004313 2.7e-14 82.4 56 71.4
A02p42170 Brassica napus HOM05D000032 ORTHO05D004313 3.5e-14 82.0 84 57.1
BraA02t09146Z Brassica rapa HOM05D000032 ORTHO05D004313 3.5e-14 82.0 84 57.1
Nitab4.5_0000072g0160 Nicotiana tabacum HOM05D000032 ORTHO05D004313 4.5e-14 81.6 96 53.1
Gohir.D11G007900 Gossypium hirsutum HOM05D000032 ORTHO05D004313 5.9e-14 81.3 121 44.6
Solyc03g007010.4 Solanum lycopersicum HOM05D000032 ORTHO05D004313 5.9e-14 81.3 54 74.1
Nitab4.5_0006353g0030 Nicotiana tabacum HOM05D000032 ORTHO05D004313 7.7e-14 80.9 51 76.5
Rhsim09G0194000 Rhododendron simsii HOM05D000032 ORTHO05D004313 7.7e-14 80.9 56 73.2
unitig_0.g1165 Utricularia gibba HOM05D000032 ORTHO05D004313 7.7e-14 80.9 70 55.7
Peaxi162Scf00192g00836 Petunia axillaris HOM05D000032 ORTHO05D004313 1.3e-13 80.1 51 76.5
COL.COLO4_14203 Corchorus olitorius HOM05D001120 ORTHO05D004313 1.7e-13 79.7 84 54.8
Glyma.20G152200 Glycine max HOM05D000032 ORTHO05D004313 2.2e-13 79.3 55 70.9
Gorai.007G009400 Gossypium raimondii HOM05D000032 ORTHO05D004313 2.2e-13 79.3 125 42.4
Psat6g203760 Pisum sativum HOM05D000032 ORTHO05D004313 2.2e-13 79.3 87 50.6
Aqoxy7G00549 Aquilegia oxysepala HOM05D000032 ORTHO05D004313 2.9e-13 79.0 91 51.6
BcaNung01407 Brassica carinata HOM05D000032 ORTHO05D004313 2.9e-13 79.0 102 47.1
vmacro06757 Vaccinium macrocarpon HOM05D000032 ORTHO05D004313 2.9e-13 79.0 85 55.3
arahy.Tifrunner.gnm1.ann1.YYW2BF Arachis hypogaea HOM05D000032 ORTHO05D004313 3.8e-13 78.6 57 66.7
Oeu030163.1 Olea europaea HOM05D000032 ORTHO05D004313 3.8e-13 78.6 50 74.0
Os09g0520700 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D004313 3.8e-13 78.6 56 69.6
Sabra12G0098600 Salix brachista HOM05D001120 ORTHO05D004313 5.0e-13 78.2 84 52.4
Zm00001eb318770 Zea mays HOM05D000032 ORTHO05D004313 5.0e-13 78.2 56 67.9
BcaB07g29792 Brassica carinata HOM05D000032 ORTHO05D004313 6.5e-13 77.8 66 63.6
Glyma.10G241900 Glycine max HOM05D000032 ORTHO05D004313 6.5e-13 77.8 51 72.5
Medtr1g102410 Medicago truncatula HOM05D000032 ORTHO05D004313 6.5e-13 77.8 57 63.2
Psat0s3731g0160 Pisum sativum HOM05D000032 ORTHO05D004313 6.5e-13 77.8 66 63.6
MSTRG.8791 Avicennia marina HOM05D000032 ORTHO05D004313 8.5e-13 77.4 68 57.4
BcaC04g23425 Brassica carinata HOM05D000032 ORTHO05D004313 8.5e-13 77.4 96 49.0
C09p08450 Brassica napus HOM05D000032 ORTHO05D004313 8.5e-13 77.4 96 49.0
BolC9t53755H Brassica oleracea HOM05D000032 ORTHO05D004313 8.5e-13 77.4 96 49.0
Thhalv10003756m.g Eutrema salsugineum HOM05D000032 ORTHO05D004313 8.5e-13 77.4 85 54.1
AL8G39010 Arabidopsis lyrata HOM05D000032 ORTHO05D004313 1.1e-12 77.0 68 64.7
QL12p039208 Quercus lobata HOM05D000032 ORTHO05D004313 1.1e-12 77.0 58 67.2
Thecc.03G163800 Theobroma cacao HOM05D000032 ORTHO05D004313 1.1e-12 77.0 89 53.9
DCAR_009438 Daucus carota HOM05D000032 ORTHO05D004313 1.5e-12 76.6 84 54.8
BcaC03g18134 Brassica carinata HOM05D000032 ORTHO05D004313 1.9e-12 76.3 82 56.1
Actinidia13528 Actinidia chinensis HOM05D000032 ORTHO05D004313 2.5e-12 75.9 51 70.6
arahy.Tifrunner.gnm1.ann1.C0EFXX Arachis hypogaea HOM05D000032 ORTHO05D004313 2.5e-12 75.9 101 47.5
A09p07560 Brassica napus HOM05D000032 ORTHO05D004313 2.5e-12 75.9 95 49.5
BraA09t36410Z Brassica rapa HOM05D000032 ORTHO05D004313 2.5e-12 75.9 95 49.5
Gohir.A11G008600 Gossypium hirsutum HOM05D000032 ORTHO05D004313 2.5e-12 75.9 123 41.5
SalBow4G2661 Salvia bowleyana HOM05D000032 ORTHO05D004313 2.5e-12 75.9 55 67.3
TPR.G26094 Trifolium pratense HOM05D000032 ORTHO05D004313 2.5e-12 75.9 99 44.4
Ca_10831_v3 Cicer arietinum L. HOM05D000032 ORTHO05D004313 3.2e-12 75.5 57 63.2
Duzib084G0726 Durio zibethinus HOM05D000032 ORTHO05D004313 3.2e-12 75.5 87 55.2
Lj2g0011704 Lotus japonicus HOM05D000032 ORTHO05D004313 3.2e-12 75.5 91 51.6
CDE12G0387 Ceratophyllum demersum HOM05D000032 ORTHO05D004313 4.2e-12 75.1 95 46.3
Ciclev10004459m.g Citrus clementina HOM05D000032 ORTHO05D004313 4.2e-12 75.1 91 53.8
Haze_13810 Corylus avellana HOM05D000032 ORTHO05D004313 4.2e-12 75.1 84 51.2
Dinv08002 Davidia involucrata HOM05D000032 ORTHO05D004313 4.2e-12 75.1 54 66.7
Lalb_Chr03g0032991 Lupinus albus HOM05D000032 ORTHO05D004313 4.2e-12 75.1 51 72.5
RcHm_v2.0_Chr1g0375371 Rosa chinensis HOM05D000032 ORTHO05D004313 4.2e-12 75.1 94 52.1
VMungo0720G2533 Vigna mungo HOM05D000032 ORTHO05D004313 4.2e-12 75.1 51 72.5
Aa31LG11G1400 Aethionema arabicum HOM05D000032 ORTHO05D004313 5.5e-12 74.7 66 63.6
C02p62020 Brassica napus HOM05D000032 ORTHO05D004313 5.5e-12 74.7 84 54.8
MELO3C005400.2 Cucumis melo HOM05D000032 ORTHO05D004313 5.5e-12 74.7 91 51.6
ECA238G3800 Erigeron canadensis HOM05D000032 ORTHO05D004313 5.5e-12 74.7 89 50.6
Potri.012G131000 Populus trichocarpa HOM05D000032 ORTHO05D004313 5.5e-12 74.7 84 50.0
CARHR275980 Cardamine hirsuta HOM05D000032 ORTHO05D004313 7.2e-12 74.3 103 48.5
Duzib205G1326 Durio zibethinus HOM05D000032 ORTHO05D004313 7.2e-12 74.3 51 68.6
MBI04_g19223_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004313 9.4e-12 73.9 71 53.5
Phvul.007G063700 Phaseolus vulgaris HOM05D000032 ORTHO05D004313 9.4e-12 73.9 51 70.6
Prupe.2G284200 Prunus persica HOM05D000032 ORTHO05D004313 9.4e-12 73.9 94 52.1
TPR.G24657 Trifolium pratense HOM05D000032 ORTHO05D004313 9.4e-12 73.9 51 70.6
ClCG01G005260 Citrullus lanatus HOM05D000032 ORTHO05D004313 1.2e-11 73.6 91 50.5
CBR_g45654 Chara braunii HOM05D000032 ORTHO05D004313 1.6e-11 73.2 52 67.3
CBR_g45655 Chara braunii HOM05D000032 ORTHO05D004313 1.6e-11 73.2 52 67.3
AT5G62190 Arabidopsis thaliana HOM05D000032 ORTHO05D004313 2.1e-11 72.8 68 61.8
DCAR_020212 Daucus carota HOM05D000032 ORTHO05D004313 2.1e-11 72.8 51 66.7
Manes.14G031800 Manihot esculenta HOM05D000032 ORTHO05D004313 2.1e-11 72.8 51 70.6
CiPaw.04G064100 Carya illinoinensis HOM05D000032 ORTHO05D004313 2.7e-11 72.4 87 50.6
Lsat_1_v5_gn_2_129840 Lactuca sativa HOM05D000032 ORTHO05D004313 2.7e-11 72.4 90 44.4
Lj5g0013117 Lotus japonicus HOM05D000032 ORTHO05D004313 2.7e-11 72.4 58 63.8
arahy.Tifrunner.gnm1.ann1.ZFZQ7Q Arachis hypogaea HOM05D000032 ORTHO05D004313 3.6e-11 72.0 51 66.7
Oeu039220.1 Olea europaea HOM05D000032 ORTHO05D004313 3.6e-11 72.0 84 51.2
Sabra15G0145800 Salix brachista HOM05D000032 ORTHO05D004313 3.6e-11 72.0 84 48.8
SHI13814 Sapria himalayana HOM05D000032 ORTHO05D004313 3.6e-11 72.0 88 53.4
Sp2g25390 Schrenkiella parvula HOM05D000032 ORTHO05D004313 3.6e-11 72.0 119 40.3
Gohir.D12G263800 Gossypium hirsutum HOM05D000032 ORTHO05D004313 4.7e-11 71.6 51 68.6
Manes.06G139200 Manihot esculenta HOM05D000032 ORTHO05D004313 4.7e-11 71.6 92 48.9
Gohir.A12G263300 Gossypium hirsutum HOM05D000032 ORTHO05D004313 6.1e-11 71.2 51 66.7
Gorai.008G282800 Gossypium raimondii HOM05D000032 ORTHO05D004313 6.1e-11 71.2 51 66.7
Sed0020096 Sechium edule HOM05D000032 ORTHO05D004313 6.1e-11 71.2 93 50.5
Carub.0008s2288 Capsella rubella HOM05D000032 ORTHO05D004313 8.0e-11 70.9 67 61.2
CiPaw.03G098400 Carya illinoinensis HOM05D000032 ORTHO05D004313 8.0e-11 70.9 55 63.6
ATR0757G026 Amborella trichopoda HOM05D000032 ORTHO05D004313 1.0e-10 70.5 90 45.6
Lalb_Chr19g0131241 Lupinus albus HOM05D000032 ORTHO05D004313 1.0e-10 70.5 54 64.8
MBI16_g24674_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004313 1.0e-10 70.5 98 49.0
MD07G1259900 Malus domestica HOM05D000032 ORTHO05D004313 1.0e-10 70.5 51 66.7
CsaV3_5G005540 Cucumis sativus L. HOM05D001244 ORTHO05D004313 1.4e-10 70.1 91 49.5
Lalb_Chr01g0008871 Lupinus albus HOM05D000032 ORTHO05D004313 1.4e-10 70.1 49 71.4
MD01G1187800 Malus domestica HOM05D000032 ORTHO05D004313 1.4e-10 70.1 51 66.7
Mapoly0021s0161 Marchantia polymorpha HOM05D000032 ORTHO05D004313 1.4e-10 70.1 78 55.1
Sed0013996 Sechium edule HOM05D000032 ORTHO05D004313 1.8e-10 69.7 98 49.0
Medtr6g056080 Medicago truncatula HOM05D000032 ORTHO05D004313 2.3e-10 69.3 54 63.0
ECA233G3543 Erigeron canadensis HOM05D000032 ORTHO05D004313 4.0e-10 68.6 53 56.6
FvH4_7g28410 Fragaria vesca HOM05D000032 ORTHO05D004313 4.0e-10 68.6 97 48.5
FAN01G2995 Fragaria x ananassa HOM05D000032 ORTHO05D004313 5.2e-10 68.2 96 49.0
FAN06G1059 Fragaria x ananassa HOM05D000032 ORTHO05D004313 5.2e-10 68.2 98 48.0
FAN06G1914 Fragaria x ananassa HOM05D000032 ORTHO05D004313 5.2e-10 68.2 98 48.0
FAN10G1730 Fragaria x ananassa HOM05D000032 ORTHO05D004313 6.8e-10 67.8 97 47.4
HanXRQChr08g0214971 Helianthus annuus HOM05D000032 ORTHO05D004313 6.8e-10 67.8 64 51.6
PSO478G0487 Papaver somniferum HOM05D000032 ORTHO05D004313 6.8e-10 67.8 76 55.3
SMO141G0196 Selaginella moellendorffii HOM05D000032 ORTHO05D004313 6.8e-10 67.8 61 63.9
CAN.G1135.3 Capsicum annuum HOM05D000032 ORTHO05D004313 1.2e-09 67.0 119 40.3
PSO782G2275 Papaver somniferum HOM05D000032 ORTHO05D004313 1.2e-09 67.0 91 49.5
arahy.Tifrunner.gnm1.ann1.U9Y6Z5 Arachis hypogaea HOM05D000032 ORTHO05D004313 1.5e-09 66.6 51 62.7
Potri.015G133400 Populus trichocarpa HOM05D000032 ORTHO05D004313 1.5e-09 66.6 84 50.0
FAN03G3033 Fragaria x ananassa HOM05D000032 ORTHO05D004313 4.4e-09 65.1 96 47.9
Pp3c10_20840 Physcomitrium patens HOM05D000032 ORTHO05D004313 1.3e-08 63.5 88 43.2
FAN03G3419 Fragaria x ananassa HOM05D000032 ORTHO05D004313 1.7e-08 63.2 96 46.9
Cpa.g.sc3.253 Carica papaya HOM05D000032 ORTHO05D004313 2.8e-08 62.4 119 37.0
AagrBONN_evm.TU.Sc2ySwM_117.2717 Anthoceros agrestis HOM05D000032 ORTHO05D004313 3.7e-08 62.0 82 45.1
AagrBONN_evm.TU.Sc2ySwM_262.1 Anthoceros agrestis HOM05D000032 ORTHO05D021207 3.7e-08 62.0 82 45.1
FAN16G1811 Fragaria x ananassa HOM05D000032 ORTHO05D004313 4.9e-08 61.6 88 38.6
FAN25G1805 Fragaria x ananassa HOM05D000032 ORTHO05D004313 4.9e-08 61.6 88 38.6
Pp3c20_20710 Physcomitrium patens HOM05D000032 ORTHO05D004313 4.9e-08 61.6 74 51.4
BcaB05g22362 Brassica carinata HOM05D000032 ORTHO05D021207 6.3e-08 61.2 69 49.3
Cfa008242 Carpinus fangiana HOM05D001120 ORTHO05D004313 8.3e-08 60.8 44 68.2
HPP92_003296 Vanilla planifolia HOM05D000032 ORTHO05D004313 8.3e-08 60.8 92 44.6
Zm00001eb339610 Zea mays HOM05D000032 ORTHO05D004313 1.8e-07 59.7 28 96.4
CDE04G3308 Ceratophyllum demersum HOM05D000032 ORTHO05D004313 3.1e-07 58.9 69 46.4
Eucgr.A00875 Eucalyptus grandis HOM05D000032 ORTHO05D015646 3.1e-07 58.9 83 47.0
TPR.G21681 Trifolium pratense HOM05D000032 ORTHO05D004313 3.1e-07 58.9 28 92.9
BraA03t10057Z Brassica rapa HOM05D000032 ORTHO05D021207 4.1e-07 58.5 69 50.7
GSVIVG01018476001 Vitis vinifera HOM05D000032 ORTHO05D004313 4.1e-07 58.5 28 92.9
BolC2t12262H Brassica oleracea HOM05D000032 ORTHO05D004313 5.4e-07 58.2 30 86.7
RcHm_v2.0_Chr5g0065431 Rosa chinensis HOM05D000032 ORTHO05D004313 7.0e-07 57.8 74 45.9
SGA_v2.0_scaffold303G47877 Striga asiatica HOM05D000032 ORTHO05D004313 7.0e-07 57.8 35 77.1
FvH4_3g36510 Fragaria vesca HOM05D000032 ORTHO05D004313 1.2e-06 57.0 53 52.8
FAN11G2441 Fragaria x ananassa HOM05D000032 ORTHO05D004313 1.2e-06 57.0 53 52.8
MBI04_g43167_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004313 2.0e-06 56.2 88 42.0
Psat0s1342g0040 Pisum sativum HOM05D000032 ORTHO05D015646 2.7e-06 55.8 65 46.2
Psat4g086120 Pisum sativum HOM05D000032 ORTHO05D004313 3.5e-06 55.5 65 46.2


User provided reference genes

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