Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g199060 Amaranthus hybridus HOM05D000584 ORTHO05D000458 9.5e-34 146.4 79 100.0
EL10Ac5g12287 Beta vulgaris HOM05D000584 ORTHO05D000458 1.9e-26 122.1 78 79.5
Sc01g0008090 Simmondsia chinensis HOM05D000584 ORTHO05D000458 8.1e-17 90.1 76 65.8
Peaxi162Scf00446g00211 Petunia axillaris HOM05D000584 ORTHO05D000458 6.4e-14 80.5 73 61.6
vmacro14129 Vaccinium macrocarpon HOM05D000584 ORTHO05D000458 6.4e-14 80.5 72 58.3
Hma1.2p1_0840F.1_g226500 Hydrangea macrophylla HOM05D000584 ORTHO05D000458 1.4e-13 79.3 71 60.6
Hund11325 Selenicereus undatus HOM05D000584 ORTHO05D000458 1.4e-13 79.3 76 56.6
Lj2A227T57 Lonicera japonica HOM05D000584 ORTHO05D000458 2.4e-13 78.6 70 60.0
Nitab4.5_0007628g0050 Nicotiana tabacum HOM05D000584 ORTHO05D000458 3.2e-13 78.2 73 58.9
Sc22g0001100 Simmondsia chinensis HOM05D000584 ORTHO05D000458 3.2e-13 78.2 65 67.7
Nitab4.5_0000500g0130 Nicotiana tabacum HOM05D000584 ORTHO05D000458 4.2e-13 77.8 73 58.9
Cc08_g11480 Coffea canephora HOM05D000584 ORTHO05D000458 5.4e-13 77.4 71 57.7
Dinv21691 Davidia involucrata HOM05D000584 ORTHO05D000458 5.4e-13 77.4 71 60.6
Thecc.03G243000 Theobroma cacao HOM05D000584 ORTHO05D000458 9.3e-13 76.6 76 55.3
Eucgr.D02126 Eucalyptus grandis HOM05D000584 ORTHO05D000458 1.6e-12 75.9 74 59.5
CAN.G761.20 Capsicum annuum HOM05D000584 ORTHO05D000458 2.1e-12 75.5 71 57.7
MBI04_g28361_MAGBIO Magnolia biondii HOM05D000584 ORTHO05D000458 2.7e-12 75.1 73 57.5
PGR031G0039 Punica granatum HOM05D000584 ORTHO05D000458 2.7e-12 75.1 77 57.1
Ca_22006_v3 Cicer arietinum L. HOM05D000584 ORTHO05D000458 6.0e-12 73.9 67 58.2
TPR.G25759 Trifolium pratense HOM05D000584 ORTHO05D000458 6.0e-12 73.9 67 59.7
arahy.Tifrunner.gnm1.ann1.5JA4PA Arachis hypogaea HOM05D000584 ORTHO05D000458 7.9e-12 73.6 66 60.6
arahy.Tifrunner.gnm1.ann1.R3XHSV Arachis hypogaea HOM05D000584 ORTHO05D000458 7.9e-12 73.6 66 60.6
Gohir.D09G191500 Gossypium hirsutum HOM05D000584 ORTHO05D000458 7.9e-12 73.6 77 55.8
Gorai.006G214300 Gossypium raimondii HOM05D000584 ORTHO05D000458 7.9e-12 73.6 77 55.8
CSS0023310 Camellia sinensis var. sinensis HOM05D000584 ORTHO05D000458 1.0e-11 73.2 72 56.9
PSO063G4473 Papaver somniferum HOM05D000584 ORTHO05D000458 1.0e-11 73.2 64 62.5
PSO782G2791 Papaver somniferum HOM05D000584 ORTHO05D000458 1.0e-11 73.2 64 62.5
VMungo1215G2795 Vigna mungo HOM05D000584 ORTHO05D000458 1.0e-11 73.2 64 59.4
Duzib068G0052 Durio zibethinus HOM05D000584 ORTHO05D000458 1.3e-11 72.8 76 53.9
Lalb_Chr09g0324211 Lupinus albus HOM05D000584 ORTHO05D000458 1.8e-11 72.4 73 56.2
TAR636G0140 Trochodendron aralioides HOM05D000584 ORTHO05D000458 1.8e-11 72.4 75 53.3
Medtr4g099440 Medicago truncatula HOM05D000584 ORTHO05D000458 2.3e-11 72.0 74 52.7
Phvul.002G001300 Phaseolus vulgaris HOM05D000584 ORTHO05D000458 3.9e-11 71.2 64 59.4
Prupe.5G058700 Prunus persica HOM05D000584 ORTHO05D000458 3.9e-11 71.2 72 55.6
THA.LOC104806680 Tarenaya hassleriana HOM05D000584 ORTHO05D000458 3.9e-11 71.2 67 53.7
Atru.chr9.1226 Acer truncatum HOM05D000584 ORTHO05D000458 5.1e-11 70.9 70 55.7
CiPaw.12G047400 Carya illinoinensis HOM05D000584 ORTHO05D000458 5.1e-11 70.9 67 56.7
Potri.003G082500 Populus trichocarpa HOM05D000584 ORTHO05D000458 5.1e-11 70.9 72 56.9
Glyma.01G205300 Glycine max HOM05D000584 ORTHO05D000458 6.7e-11 70.5 74 50.0
Glyma.05G064600 Glycine max HOM05D000584 ORTHO05D000458 6.7e-11 70.5 70 54.3
MD04G1051600 Malus domestica HOM05D000584 ORTHO05D000458 6.7e-11 70.5 67 56.7
MD06G1048500 Malus domestica HOM05D000584 ORTHO05D000458 6.7e-11 70.5 67 58.2
Peaxi162Scf00102g00850 Petunia axillaris HOM05D000584 ORTHO05D000458 6.7e-11 70.5 76 56.6
RcHm_v2.0_Chr7g0205271 Rosa chinensis HOM05D000584 ORTHO05D000458 6.7e-11 70.5 69 55.1
TWI60G0611 Tripterygium wilfordii HOM05D000584 ORTHO05D000458 6.7e-11 70.5 72 54.2
Haze_07977 Corylus avellana HOM05D000584 ORTHO05D000458 8.7e-11 70.1 64 62.5
Psat4g075080 Pisum sativum HOM05D000584 ORTHO05D000458 8.7e-11 70.1 67 59.7
Solyc08g007200.4 Solanum lycopersicum HOM05D000584 ORTHO05D000458 8.7e-11 70.1 76 55.3
Sopen08g003150 Solanum pennellii HOM05D000584 ORTHO05D000458 8.7e-11 70.1 76 55.3
CAN.G845.18 Capsicum annuum HOM05D000584 ORTHO05D000458 1.1e-10 69.7 76 55.3
PGSC0003DMG400020490 Solanum tuberosum HOM05D000584 ORTHO05D000458 1.1e-10 69.7 76 55.3
Glyma.11G037600 Glycine max HOM05D000584 ORTHO05D000458 1.5e-10 69.3 64 57.8
QL12p009073 Quercus lobata HOM05D000584 ORTHO05D000458 1.5e-10 69.3 72 54.2
Actinidia31499 Actinidia chinensis HOM05D000584 ORTHO05D000458 1.9e-10 68.9 73 53.4
Aqoxy3G02696 Aquilegia oxysepala HOM05D000584 ORTHO05D000458 1.9e-10 68.9 84 52.4
Thhalv10001019m.g Eutrema salsugineum HOM05D000584 ORTHO05D000458 1.9e-10 68.9 62 56.5
FAN04G1097 Fragaria x ananassa HOM05D000584 ORTHO05D000458 1.9e-10 68.9 69 55.1
Oeu017212.1 Olea europaea HOM05D000584 ORTHO05D000458 1.9e-10 68.9 62 64.5
Potri.001G152100 Populus trichocarpa HOM05D000584 ORTHO05D000458 1.9e-10 68.9 72 54.2
Solyc08g078000.3 Solanum lycopersicum HOM05D000584 ORTHO05D000458 1.9e-10 68.9 73 50.7
Sopen08g026510 Solanum pennellii HOM05D000584 ORTHO05D000458 1.9e-10 68.9 73 50.7
PGSC0003DMG400026252 Solanum tuberosum HOM05D000584 ORTHO05D000458 1.9e-10 68.9 78 48.7
Sabra01G0121800 Salix brachista HOM05D000584 ORTHO05D000458 2.5e-10 68.6 65 58.5
TWI81G0165 Tripterygium wilfordii HOM05D000584 ORTHO05D000458 2.5e-10 68.6 72 54.2
Actinidia10858 Actinidia chinensis HOM05D000584 ORTHO05D000458 3.3e-10 68.2 64 57.8
CiPaw.11G069500 Carya illinoinensis HOM05D000584 ORTHO05D000458 3.3e-10 68.2 68 54.4
FvH4_5g20180 Fragaria vesca HOM05D000584 ORTHO05D000458 3.3e-10 68.2 69 53.6
Sabra03G0053200 Salix brachista HOM05D000584 ORTHO05D000458 3.3e-10 68.2 72 52.8
Sed0027273 Sechium edule HOM05D000584 ORTHO05D000458 5.6e-10 67.4 73 47.9
Zm00001eb249150 Zea mays HOM05D000584 ORTHO05D000458 5.6e-10 67.4 74 44.6
CDE06G1660 Ceratophyllum demersum HOM05D000584 ORTHO05D000458 7.4e-10 67.0 76 47.4
Lalb_Chr05g0214241 Lupinus albus HOM05D000584 ORTHO05D000458 7.4e-10 67.0 72 56.9
Nn1g00811 Nelumbo nucifera HOM05D000584 ORTHO05D000458 7.4e-10 67.0 86 50.0
TAR375G0925 Trochodendron aralioides HOM05D000584 ORTHO05D000458 7.4e-10 67.0 72 51.4
Actinidia25903 Actinidia chinensis HOM05D000584 ORTHO05D000458 9.6e-10 66.6 74 50.0
Manes.02G044100 Manihot esculenta HOM05D000584 ORTHO05D000458 9.6e-10 66.6 78 48.7
Nitab4.5_0006594g0070 Nicotiana tabacum HOM05D000584 ORTHO05D000458 9.6e-10 66.6 76 55.3
Sed0005551 Sechium edule HOM05D000584 ORTHO05D000458 9.6e-10 66.6 67 53.7
Duzib084G0648 Durio zibethinus HOM05D000584 ORTHO05D000458 1.3e-09 66.2 75 53.3
Os02g0652550 Oryza sativa ssp. japonica HOM05D000584 ORTHO05D000458 1.3e-09 66.2 75 45.3
AL8G10850 Arabidopsis lyrata HOM05D000584 ORTHO05D000458 1.6e-09 65.9 74 52.7
AT5G47180 Arabidopsis thaliana HOM05D000584 ORTHO05D000458 1.6e-09 65.9 74 52.7
Cpa.g.sc89.4 Carica papaya HOM05D000584 ORTHO05D000458 1.6e-09 65.9 65 58.5
Ciclev10022085m.g Citrus clementina HOM05D000584 ORTHO05D000458 2.1e-09 65.5 72 51.4
FAN18G0850 Fragaria x ananassa HOM05D000584 ORTHO05D000458 2.1e-09 65.5 69 52.2
Ca_24607_v3 Cicer arietinum L. HOM05D000584 ORTHO05D000458 2.8e-09 65.1 72 50.0
Lalb_Chr16g0379381 Lupinus albus HOM05D000584 ORTHO05D000458 2.8e-09 65.1 64 59.4
BcaC03g16948 Brassica carinata HOM05D000584 ORTHO05D000458 3.7e-09 64.7 62 56.5
A02p30920 Brassica napus HOM05D000584 ORTHO05D000458 3.7e-09 64.7 62 56.5
C02p48530 Brassica napus HOM05D000584 ORTHO05D000458 3.7e-09 64.7 62 56.5
BolC2t10885H Brassica oleracea HOM05D000584 ORTHO05D000458 3.7e-09 64.7 62 56.5
BraA02t08104Z Brassica rapa HOM05D000584 ORTHO05D000458 3.7e-09 64.7 62 56.5
Oeu017033.2 Olea europaea HOM05D000584 ORTHO05D000458 3.7e-09 64.7 67 56.7
CARHR174180 Cardamine hirsuta HOM05D000584 ORTHO05D000458 4.8e-09 64.3 63 55.6
BcaB07g30789 Brassica carinata HOM05D000584 ORTHO05D000458 6.2e-09 63.9 65 50.8
ClCG10G002310 Citrullus lanatus HOM05D000584 ORTHO05D000458 6.2e-09 63.9 62 53.2
Glyma.17G146400 Glycine max HOM05D000584 ORTHO05D000458 6.2e-09 63.9 70 52.9
BcaC06g31410 Brassica carinata HOM05D000584 ORTHO05D000458 8.1e-09 63.5 65 52.3
Manes.01G087200 Manihot esculenta HOM05D000584 ORTHO05D000458 8.1e-09 63.5 62 54.8
Gohir.A03G004900 Gossypium hirsutum HOM05D000584 ORTHO05D000458 1.1e-08 63.2 72 50.0
Aa31sc198G30 Aethionema arabicum HOM05D000584 ORTHO05D000458 1.4e-08 62.8 70 48.6
Sp2g11980 Schrenkiella parvula HOM05D000584 ORTHO05D000458 1.4e-08 62.8 63 52.4
MELO3C013905.2 Cucumis melo HOM05D000584 ORTHO05D000458 1.8e-08 62.4 74 48.6
Psat2g176120 Pisum sativum HOM05D000584 ORTHO05D000458 1.8e-08 62.4 67 52.2
Lj2g0012729 Lotus japonicus HOM05D000584 ORTHO05D000458 2.4e-08 62.0 69 52.2
CANSAT21G0412 Cannabis sativa HOM05D000584 ORTHO05D000458 3.1e-08 61.6 70 50.0
COL.COLO4_21686 Corchorus olitorius HOM05D000584 ORTHO05D000458 3.1e-08 61.6 115 39.1
Gohir.A08G165600 Gossypium hirsutum HOM05D000584 ORTHO05D000458 3.1e-08 61.6 55 58.2
Gohir.D03G167700 Gossypium hirsutum HOM05D000584 ORTHO05D000458 3.1e-08 61.6 72 48.6
Gohir.D08G184400 Gossypium hirsutum HOM05D000584 ORTHO05D000458 3.1e-08 61.6 55 58.2
Gorai.003G177400 Gossypium raimondii HOM05D000584 ORTHO05D000458 3.1e-08 61.6 72 48.6
Gorai.004G193700 Gossypium raimondii HOM05D000584 ORTHO05D000458 3.1e-08 61.6 55 58.2
Os10g0549100 Oryza sativa ssp. japonica HOM05D000584 ORTHO05D000458 4.0e-08 61.2 69 42.0
A06p45230 Brassica napus HOM05D000584 ORTHO05D000458 6.9e-08 60.5 62 53.2
C07p30870 Brassica napus HOM05D000584 ORTHO05D000458 6.9e-08 60.5 62 53.2
BolC7t43628H Brassica oleracea HOM05D000584 ORTHO05D000458 6.9e-08 60.5 62 53.2
BraA06t27393Z Brassica rapa HOM05D000584 ORTHO05D000458 6.9e-08 60.5 62 53.2
CsaV3_3G002350 Cucumis sativus L. HOM05D000584 ORTHO05D000458 9.0e-08 60.1 74 47.3
Duzib205G2027 Durio zibethinus HOM05D000584 ORTHO05D000458 1.2e-07 59.7 89 44.9
HPP92_020678 Vanilla planifolia HOM05D000584 ORTHO05D000458 1.2e-07 59.7 64 46.9
ATR0665G365 Amborella trichopoda HOM05D000584 ORTHO05D000458 1.5e-07 59.3 72 47.2
BcaC04g21642 Brassica carinata HOM05D000584 ORTHO05D000458 2.0e-07 58.9 62 51.6
BcaC06g34279 Brassica carinata HOM05D000584 ORTHO05D000458 2.0e-07 58.9 72 45.8
A09p22900 Brassica napus HOM05D000584 ORTHO05D000458 2.0e-07 58.9 62 51.6
C09p29470 Brassica napus HOM05D000584 ORTHO05D000458 2.0e-07 58.9 62 51.6
BolC9t55811H Brassica oleracea HOM05D000584 ORTHO05D000458 2.0e-07 58.9 62 51.6
BraA09t37891Z Brassica rapa HOM05D000584 ORTHO05D000458 2.0e-07 58.9 62 51.6
Nn6g33793 Nelumbo nucifera HOM05D000584 ORTHO05D000458 4.5e-07 57.8 72 43.1
THA.LOC104812814 Tarenaya hassleriana HOM05D000584 ORTHO05D000458 5.8e-07 57.4 62 53.2
HanXRQChr13g0395661 Helianthus annuus HOM05D000584 ORTHO05D000458 1.3e-06 56.2 78 38.5
TPR.G31426 Trifolium pratense HOM05D000584 ORTHO05D000458 2.2e-06 55.5 64 48.4
SGA_v2.0_scaffold6G03138 Striga asiatica HOM05D000584 ORTHO05D000458 6.4e-06 53.9 65 47.7
DCAR_000652 Daucus carota HOM05D000584 ORTHO05D000458 8.4e-06 53.5 54 55.6


User provided reference genes

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