Gene: AT5G47180

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G47180
  • Transcript Identifier AT5G47180.1
  • Gene Type Coding gene
  • Location Chr5 : 19161384-19163265 : negative

Gene Family Information

  • ID HOM05D000584
  • #Genes/#Species 950/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G47180.1
  • uniprot Q9LVU1

Descriptions

  • Description Plant VAMP (vesicle-associated membrane protein) family protein
  • Computational description Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1065 Blast hits to 1054 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 413; Fungi - 138; Plants - 424; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061817
IBA
Gene Ontologyendoplasmic reticulum-plasma membrane tethering1
GO:0090158
IBA
Gene Ontologyendoplasmic reticulum membrane organization1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
ISM, IBA
Gene Ontologyplasma membrane1
GO:0005783
IDA
IEA
GOA Databaseendoplasmic reticulum
GO:0005783
HDA
Gene Ontologyendoplasmic reticulum2
GO:0009536
HDA
Gene Ontologyplastid3
GO:0005789
IEA
GOA Databaseendoplasmic reticulum membrane
GO:0005789
IBA
Gene Ontologyendoplasmic reticulum membrane1
GO:0005789
IEA
InterProendoplasmic reticulum membrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016763 Vesicle-associated membrane-protein-associated protein
IPR008962 PapD-like superfamily
IPR013783 Immunoglobulin-like fold
IPR000535 Major sperm protein (MSP) domain
Mapman id Description
20.7.1 Cytoskeleton organisation.endoplasmic reticulum-cytoskeleton-plasma membrane interface.contact site protein (VAP27)