Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 1.4e-301 1038.9 533 100.0
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 6.9e-237 823.9 506 84.2
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.7e-230 802.7 477 86.2
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 7.5e-215 750.7 490 77.8
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 9.7e-215 750.4 496 77.4
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 9.7e-215 750.4 494 77.9
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 4.1e-213 745.0 493 77.1
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 9.4e-210 733.8 540 70.4
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 9.4e-210 733.8 490 75.5
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 2.3e-208 729.2 502 74.3
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 8.8e-208 727.2 506 73.7
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 1.2e-207 726.9 499 72.9
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 2.6e-207 725.7 523 72.5
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 7.5e-207 724.2 515 71.8
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 7.5e-207 724.2 515 72.0
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 2.2e-206 722.6 499 72.5
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 2.8e-206 722.2 498 72.9
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 2.8e-206 722.2 483 76.0
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 3.7e-206 721.8 508 73.0
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 6.3e-206 721.1 529 69.0
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 6.3e-206 721.1 497 73.4
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 8.3e-206 720.7 492 74.0
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 1.1e-205 720.3 495 73.3
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 3.1e-205 718.8 504 73.6
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 3.1e-205 718.8 530 70.4
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 3.1e-205 718.8 483 75.4
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 4.1e-205 718.4 508 72.8
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 1.2e-204 716.8 497 74.2
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.6e-204 716.5 495 73.1
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 1.6e-204 716.5 493 72.0
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.7e-204 715.7 526 69.4
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 5.9e-204 714.5 500 71.6
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.0e-203 713.8 495 72.9
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.3e-203 713.4 502 72.9
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 1.3e-203 713.4 497 71.8
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 1.7e-203 713.0 508 70.1
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 2.3e-203 712.6 495 72.5
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.9e-203 712.2 523 69.6
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 5.0e-203 711.4 496 72.4
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 6.6e-203 711.1 486 73.5
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 6.6e-203 711.1 492 74.6
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 8.6e-203 710.7 536 70.3
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 1.5e-202 709.9 496 73.2
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 1.5e-202 709.9 492 72.6
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 1.9e-202 709.5 483 74.5
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 2.5e-202 709.1 488 72.5
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 3.3e-202 708.8 499 73.5
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 7.2e-202 707.6 499 70.7
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 7.2e-202 707.6 526 69.0
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 1.2e-201 706.8 526 69.0
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 8.0e-201 704.1 511 70.8
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 1.0e-200 703.7 493 70.8
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 1.8e-200 703.0 496 71.6
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 1.8e-200 703.0 497 73.2
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 2.3e-200 702.6 489 73.2
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 3.0e-200 702.2 496 71.8
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 5.2e-200 701.4 497 73.0
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 1.2e-199 700.3 497 72.0
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 1.2e-199 700.3 495 72.7
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 2.0e-199 699.5 494 72.1
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 2.0e-199 699.5 503 71.6
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 2.0e-199 699.5 506 70.9
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 2.6e-199 699.1 492 72.2
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 3.4e-199 698.7 494 72.1
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 7.5e-199 697.6 470 74.9
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 1.3e-198 696.8 483 72.9
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 1.3e-198 696.8 503 71.4
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 1.3e-198 696.8 492 72.2
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 1.7e-198 696.4 489 72.4
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 1.7e-198 696.4 503 71.2
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 2.8e-198 695.7 506 69.8
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 3.7e-198 695.3 502 71.3
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 3.7e-198 695.3 524 68.3
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 4.9e-198 694.9 489 72.6
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 6.3e-198 694.5 491 72.3
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 6.3e-198 694.5 489 72.6
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 8.3e-198 694.1 494 71.9
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 1.4e-197 693.3 529 68.6
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 2.4e-197 692.6 489 72.4
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 9.2e-197 690.6 487 74.5
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 9.2e-197 690.6 490 72.0
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 5.9e-196 688.0 510 68.0
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 5.9e-196 688.0 488 71.5
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 1.7e-195 686.4 489 72.0
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 2.1e-193 679.5 516 68.6
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.8e-193 679.1 504 68.3
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 1.4e-192 676.8 494 69.8
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 4.4e-191 671.8 493 68.4
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 1.2e-188 663.7 509 67.0
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 3.9e-187 658.7 481 70.7
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 5.0e-187 658.3 574 62.9
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 4.7e-185 651.7 537 63.7
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 2.7e-180 636.0 513 64.7
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 1.4e-176 623.6 440 70.5
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 2.3e-176 622.9 494 65.0
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 8.6e-171 604.4 617 55.1
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 6.2e-169 598.2 519 60.5
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 7.3e-162 574.7 457 66.3
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 2.1e-161 573.2 474 61.8
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.4e-160 570.5 483 60.2
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.4e-159 565.8 387 72.1
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 2.1e-153 546.6 494 57.5
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 3.0e-147 526.2 522 55.6
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 6.9e-144 515.0 491 56.6
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.7e-134 483.8 323 79.6
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.8e-123 447.2 358 70.4
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 6.7e-123 445.3 411 58.2
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 2.0e-114 417.2 265 77.0
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 3.2e-109 399.8 561 44.0
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 7.7e-95 352.1 256 67.6
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.9e-72 277.7 367 45.8
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.5e-71 273.5 466 40.8
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 3.3e-69 266.9 287 52.3
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 3.7e-65 253.4 188 65.4
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 2.4e-64 250.8 174 69.0
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 6.4e-57 226.1 159 70.4
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 2.1e-55 221.1 153 71.2
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.6e-54 215.7 151 68.9
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 3.3e-53 213.8 238 49.6
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 7.3e-53 212.6 125 84.0
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 2.1e-47 194.5 148 74.3
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 1.4e-43 181.8 126 79.4
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 2.9e-41 174.1 145 60.7
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.0e-38 165.6 156 57.1
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.3e-35 153.3 292 37.3
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 1.5e-34 151.8 98 74.5
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.4e-32 145.2 101 78.2
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.4e-32 145.2 101 78.2
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 2.7e-31 141.0 133 63.2
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 6.0e-31 139.8 217 38.7
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 5.1e-30 136.7 172 45.9
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 2.3e-22 111.3 127 48.0
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 6.9e-19 99.8 62 75.8
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.8e-17 94.0 73 69.9
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 2.5e-16 91.3 109 45.9
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 3.9e-14 84.0 50 84.0
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 1.8e-11 75.1 210 28.6
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 3.1e-11 74.3 62 59.7
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 9.0e-11 72.8 50 76.0
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 1.8e-06 58.5 74 45.9
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 5.1e-06 57.0 111 32.4
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 6.7e-06 56.6 111 32.4
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 8.8e-06 56.2 133 28.6


User provided reference genes

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