Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 1.0e-125 453.4 227 100.0
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 3.6e-57 225.7 190 65.8
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.3e-56 223.0 190 65.8
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.3e-56 223.0 190 65.8
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 2.4e-53 213.0 215 60.0
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.5e-47 193.7 191 56.0
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 9.7e-47 191.0 191 55.5
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 3.7e-46 189.1 191 57.6
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 4.1e-45 185.7 191 57.6
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 7.0e-45 184.9 192 54.7
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 3.5e-44 182.6 183 57.9
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.2e-43 179.9 190 55.3
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 6.5e-43 178.3 195 54.4
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 3.2e-42 176.0 188 54.8
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 5.5e-42 175.3 186 57.0
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 7.2e-42 174.9 190 52.1
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 7.2e-42 174.9 190 52.6
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.2e-41 174.1 183 56.3
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.6e-41 173.7 187 54.5
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.6e-41 173.7 187 54.5
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 1.6e-41 173.7 183 55.2
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 1.6e-41 173.7 184 54.9
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.1e-41 173.3 198 51.0
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 2.7e-41 172.9 183 54.6
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 2.7e-41 172.9 184 53.8
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 3.6e-41 172.6 187 55.6
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 4.7e-41 172.2 192 53.6
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.7e-41 172.2 190 52.1
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 8.0e-41 171.4 183 55.2
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 8.0e-41 171.4 188 54.8
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.0e-40 171.0 193 52.3
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.4e-40 170.6 188 53.7
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.3e-40 169.9 192 52.6
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 3.0e-40 169.5 195 50.8
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 6.7e-40 168.3 186 54.3
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.1e-39 167.5 191 52.9
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 2.0e-39 166.8 189 55.0
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 2.0e-39 166.8 182 56.0
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 2.0e-39 166.8 183 55.2
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.6e-39 166.4 189 52.4
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 4.4e-39 165.6 189 53.4
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 4.4e-39 165.6 183 52.5
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 5.7e-39 165.2 180 52.2
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 5.7e-39 165.2 183 53.6
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 5.7e-39 165.2 182 52.7
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 7.5e-39 164.9 193 51.3
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 7.5e-39 164.9 183 53.6
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 9.7e-39 164.5 187 52.9
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 1.3e-38 164.1 185 51.4
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 1.3e-38 164.1 183 50.3
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 1.3e-38 164.1 186 52.7
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.8e-38 162.9 183 53.6
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 3.7e-38 162.5 182 53.8
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 3.7e-38 162.5 183 54.1
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 3.7e-38 162.5 192 49.5
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 4.8e-38 162.2 192 50.0
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 6.3e-38 161.8 180 51.7
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 6.3e-38 161.8 192 50.5
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 1.1e-37 161.0 182 51.1
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.1e-37 161.0 177 52.0
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 1.1e-37 161.0 193 50.3
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.1e-37 161.0 193 53.4
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 1.4e-37 160.6 180 50.0
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 1.4e-37 160.6 184 51.1
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 1.4e-37 160.6 190 50.5
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.8e-37 160.2 182 51.6
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 1.8e-37 160.2 182 53.3
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 2.4e-37 159.8 186 53.2
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 2.4e-37 159.8 183 49.7
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 3.1e-37 159.5 173 53.8
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 4.1e-37 159.1 184 51.1
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 4.1e-37 159.1 192 50.0
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 4.1e-37 159.1 188 52.1
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 4.1e-37 159.1 180 49.4
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 5.3e-37 158.7 197 50.3
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 7.0e-37 158.3 183 50.3
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 7.0e-37 158.3 183 50.3
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 7.0e-37 158.3 183 50.3
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 7.0e-37 158.3 192 50.5
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 7.0e-37 158.3 186 52.7
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 9.1e-37 157.9 172 54.7
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 9.1e-37 157.9 185 53.0
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 1.6e-36 157.1 182 52.2
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 2.6e-36 156.4 170 52.4
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 4.5e-36 155.6 166 54.2
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 5.9e-36 155.2 193 47.7
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.0e-35 154.5 199 47.7
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.2e-35 153.3 191 49.2
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 1.1e-34 151.0 190 48.4
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 1.5e-34 150.6 197 46.2
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 5.5e-34 148.7 180 48.9
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 1.2e-33 147.5 190 48.9
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 1.2e-33 147.5 167 50.9
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 1.2e-33 147.5 194 49.5
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.6e-33 147.1 171 50.3
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 2.1e-33 146.7 190 46.3
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 8.0e-33 144.8 179 49.2
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.0e-32 144.4 183 50.8
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 1.4e-32 144.1 169 49.7
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 5.9e-28 128.6 75 82.7
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 8.5e-27 124.8 176 47.2
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 8.5e-27 124.8 215 39.1
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 1.1e-26 124.4 71 78.9
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.1e-26 124.4 72 79.2
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.1e-26 124.4 146 48.6
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 2.1e-25 120.2 72 77.8
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 2.1e-25 120.2 147 49.0
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.0e-24 117.9 163 46.0
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 1.2e-23 114.4 183 38.8
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 5.7e-23 112.1 77 71.4
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 2.2e-22 110.2 190 37.9
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.1e-21 107.8 183 40.4
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 3.5e-20 102.8 195 40.0
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.8e-19 99.4 183 39.3
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 9.5e-18 94.7 193 36.3
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 1.2e-17 94.4 182 39.6
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 3.0e-16 89.7 47 83.0
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 6.8e-16 88.6 180 34.4
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 2.6e-15 86.7 71 59.2
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 6.4e-14 82.0 72 58.3
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 1.1e-13 81.3 53 77.4
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 2.4e-13 80.1 185 33.0
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 9.2e-13 78.2 45 84.4
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.9e-12 75.5 47 78.7
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.9e-12 75.5 47 78.7
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.7e-11 73.9 47 76.6
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 3.0e-11 73.2 47 76.6
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 1.9e-10 70.5 47 72.3
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.6e-10 68.9 43 76.7
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.8e-09 66.6 43 74.4
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.8e-08 63.9 54 61.1
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 1.5e-07 60.8 28 85.7
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 9.8e-07 58.2 95 42.1
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 8.3e-06 55.1 42 61.9


User provided reference genes

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