Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g120680 Amaranthus hybridus HOM05D004178 ORTHO05D005204 5.1e-202 707.6 378 100.0
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 2.6e-129 466.1 503 56.3
Ah.07g207660 Amaranthus hybridus HOM05D004178 ORTHO05D005204 2.9e-128 462.6 436 64.2
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 2.4e-111 406.4 492 53.9
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 5.5e-103 378.6 495 45.3
Atru.chr1.752 Acer truncatum HOM05D004178 ORTHO05D005204 4.6e-102 375.6 487 46.6
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 5.1e-101 372.1 476 46.8
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 8.7e-101 371.3 481 47.2
AUR62002220 Chenopodium quinoa HOM05D004178 ORTHO05D005204 1.6e-99 367.1 491 51.5
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 2.8e-99 366.3 487 45.8
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 6.3e-99 365.2 476 46.0
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 6.9e-98 361.7 464 46.6
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 9.0e-98 361.3 490 45.5
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 1.2e-97 360.9 476 45.6
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 2.0e-97 360.1 487 43.3
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 4.5e-97 359.0 486 43.6
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 1.7e-96 357.1 476 44.7
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 2.2e-96 356.7 475 45.5
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 2.9e-96 356.3 486 43.4
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 8.5e-96 354.8 476 44.7
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 1.9e-95 353.6 492 45.9
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 3.2e-95 352.8 476 44.5
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 3.2e-95 352.8 476 44.5
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 4.2e-95 352.4 489 42.7
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 5.5e-95 352.1 476 44.5
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 5.5e-95 352.1 476 44.1
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 7.2e-95 351.7 489 42.7
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 2.1e-94 350.1 476 44.7
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 3.6e-94 349.4 476 44.5
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 3.6e-94 349.4 476 44.3
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 2.3e-93 346.7 476 44.7
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 5.1e-93 345.5 483 42.9
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 6.7e-93 345.1 476 44.3
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 8.7e-93 344.7 476 43.7
vmacro06815 Vaccinium macrocarpon HOM05D004178 ORTHO05D005204 8.7e-93 344.7 476 46.0
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 1.1e-92 344.4 478 41.8
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 1.1e-92 344.4 486 42.2
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 1.1e-92 344.4 476 44.3
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 1.5e-92 344.0 476 43.5
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 1.5e-92 344.0 476 43.5
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 1.5e-92 344.0 476 43.3
Lsat_1_v5_gn_9_51940 Lactuca sativa HOM05D004178 ORTHO05D005204 1.9e-92 343.6 479 42.2
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 1.9e-92 343.6 460 46.7
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 2.2e-91 340.1 476 44.1
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 3.7e-91 339.3 496 42.5
AL6G18000 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 1.5e-89 334.0 486 42.2
PGSC0003DMG400014287 Solanum tuberosum HOM05D004178 ORTHO05D005204 3.4e-89 332.8 464 42.7
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 5.9e-89 332.0 487 41.5
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 1.3e-88 330.9 493 41.6
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 1.3e-88 330.9 455 44.6
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 2.2e-88 330.1 482 43.4
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 3.8e-88 329.3 492 42.3
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 5.0e-88 328.9 488 41.8
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 1.4e-87 327.4 522 42.0
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 1.9e-87 327.0 492 41.7
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 2.5e-87 326.6 442 44.1
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 2.5e-87 326.6 479 42.0
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 2.5e-87 326.6 477 41.7
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 4.2e-87 325.9 442 43.9
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 1.2e-86 324.3 476 42.0
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 2.1e-86 323.6 473 42.9
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 2.7e-86 323.2 476 43.1
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 4.6e-86 322.4 484 42.4
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 6.1e-86 322.0 492 40.7
PSO782G3243 Papaver somniferum HOM05D004178 ORTHO05D005204 1.0e-85 321.2 496 41.1
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 3.0e-85 319.7 476 42.0
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 3.9e-85 319.3 478 41.4
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 4.4e-84 315.8 487 41.1
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 7.4e-84 315.1 478 41.2
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 1.3e-83 314.3 477 40.7
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.7e-83 313.9 487 40.9
unitig_37.g12493 Utricularia gibba HOM05D004178 ORTHO05D005204 2.2e-83 313.5 468 41.0
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 2.8e-83 313.2 530 39.1
SGA_v2.0_scaffold2G01219 Striga asiatica HOM05D004178 ORTHO05D005204 1.1e-82 311.2 467 42.0
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 1.8e-82 310.5 468 43.4
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 3.1e-82 309.7 477 40.7
Sabra03G0074500 Salix brachista HOM05D004178 ORTHO05D005204 4.1e-82 309.3 593 36.4
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 1.2e-81 307.8 467 42.2
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 3.4e-81 306.2 487 40.0
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 8.5e-80 301.6 476 41.2
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 1.1e-79 301.2 476 39.7
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.5e-79 300.1 441 43.8
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 3.2e-79 299.7 477 42.1
Migut.F00486 Erythranthe guttata HOM05D004178 ORTHO05D005204 9.4e-79 298.1 467 40.9
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 2.7e-78 296.6 473 40.4
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 1.4e-77 294.3 487 39.6
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 7.4e-76 288.5 466 38.6
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 7.4e-76 288.5 500 39.2
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 2.2e-75 287.0 468 40.0
CAN.G515.9 Capsicum annuum HOM05D004178 ORTHO05D005204 4.8e-75 285.8 422 42.4
COL.COLO4_14102 Corchorus olitorius HOM05D004178 ORTHO05D005204 4.8e-75 285.8 476 39.1
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 1.1e-74 284.6 487 38.4
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 1.4e-74 284.3 466 38.8
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 1.8e-74 283.9 491 40.1
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 1.3e-72 277.7 469 38.6
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 2.5e-71 273.5 486 38.1
Oeu021706.1 Olea europaea HOM05D004178 ORTHO05D005204 4.7e-70 269.2 218 62.4
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 1.8e-69 267.3 494 36.6
HPP92_027283 Vanilla planifolia HOM05D004178 ORTHO05D005204 8.8e-69 265.0 449 39.9
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 5.7e-68 262.3 399 40.6
BolC2t06288H Brassica oleracea HOM05D004178 ORTHO05D005204 8.2e-67 258.5 209 63.6
Ca_30729_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 1.0e-64 251.5 219 59.8
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 1.7e-64 250.8 464 35.8
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 2.2e-64 250.4 475 37.7
Pp3c11_11190 Physcomitrium patens HOM05D004178 ORTHO05D005204 4.7e-62 242.7 453 36.0
Mapoly0003s0057 Marchantia polymorpha HOM05D004178 ORTHO05D005204 1.2e-60 238.0 471 33.3
Psat3g047440 Pisum sativum HOM05D004178 ORTHO05D005204 4.8e-59 232.6 204 60.8
C02p03240 Brassica napus HOM05D004178 ORTHO05D005204 1.8e-58 230.7 389 38.3
Glyma.12G006400 Glycine max HOM05D004178 ORTHO05D005204 5.0e-56 222.6 181 64.6
AagrBONN_evm.TU.Sc2ySwM_228.971 Anthoceros agrestis HOM05D004178 ORTHO05D005204 7.2e-55 218.8 467 35.5
AL1G57860 Arabidopsis lyrata HOM05D004178 ORTHO05D005039 3.6e-54 216.5 201 59.2
Ca_02789_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 2.0e-52 210.7 165 64.8
BcaNung06187 Brassica carinata HOM05D004178 ORTHO05D005204 4.9e-51 206.1 292 44.2
CBR_g34600 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-45 187.6 168 54.8
AUR62042657 Chenopodium quinoa HOM05D004178 ORTHO05D005204 1.8e-45 187.6 253 52.6
Sc19g0002080 Simmondsia chinensis HOM05D004178 ORTHO05D005204 7.0e-42 175.6 334 36.5
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 1.3e-40 171.4 354 34.2
BcaC03g13191 Brassica carinata HOM05D004178 ORTHO05D005204 3.3e-39 166.8 336 34.8
DCAR_014618 Daucus carota HOM05D004178 ORTHO05D005204 1.3e-32 144.8 115 65.2
Os09g0121000 Oryza sativa ssp. japonica HOM05D004178 ORTHO05D005204 2.5e-31 140.6 117 64.1
PRCOL_00006025 Prasinoderma coloniale HOM05D004178 ORTHO05D005204 4.3e-31 139.8 250 34.8
DCAR_014619 Daucus carota HOM05D004178 ORTHO05D005204 9.9e-28 128.6 334 30.8
Cre12.g525050 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 2.2e-27 127.5 361 31.9
Haze_26632 Corylus avellana HOM05D004178 ORTHO05D005204 1.5e-23 114.8 357 30.3
HPP92_022323 Vanilla planifolia HOM05D004178 ORTHO05D005204 5.6e-23 112.8 160 38.1
Cfa025728 Carpinus fangiana HOM05D004178 ORTHO05D005204 8.1e-22 109.0 362 24.9
Cpa.g.sc1936.1 Carica papaya HOM05D004178 ORTHO05D005204 8.4e-19 99.0 149 42.3
FAN03G2333 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.6e-17 94.7 154 40.3
HPP92_022331 Vanilla planifolia HOM05D004178 ORTHO05D005204 1.0e-16 92.0 89 48.3
Cre12.g525100 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 3.0e-16 90.5 198 32.8
Os09g0121050 Oryza sativa ssp. japonica HOM05D004178 ORTHO05D005204 1.9e-15 87.8 161 32.9
SHI13977 Sapria himalayana HOM05D004178 ORTHO05D005204 3.3e-15 87.0 83 57.8
Cpa.g.sc121.6 Carica papaya HOM05D004178 ORTHO05D005204 9.6e-15 85.5 60 58.3
SMO117G0047 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 4.7e-14 83.2 105 41.0
SHI13970 Sapria himalayana HOM05D004178 ORTHO05D005204 6.2e-14 82.8 144 37.5
Oeu021707.2 Olea europaea HOM05D004178 ORTHO05D005204 1.7e-11 74.7 181 32.6
SMO137G0368 Selaginella moellendorffii HOM05D027672 ORTHO05D005204 1.7e-11 74.7 94 39.4
SMO202G0076 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 2.9e-11 73.9 173 30.6
Ca_02791_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 4.6e-09 66.6 48 60.4
PRCOL_00002930 Prasinoderma coloniale HOM05D005087 ORTHO05D006427 5.1e-08 63.2 152 32.2
SMO302G0053 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 6.6e-08 62.8 165 31.5
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 3.6e-06 57.0 150 28.7
PSO210G7144 Papaver somniferum HOM05D005087 ORTHO05D006427 3.6e-06 57.0 158 26.6


User provided reference genes

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