Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 0.0e+00 1614.0 877 100.0
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 0.0e+00 1081.2 864 70.4
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 3.5e-294 1015.0 826 67.7
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.7e-269 932.9 829 63.1
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 2.8e-267 925.6 763 65.3
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 1.0e-237 827.4 829 55.0
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 9.0e-234 814.3 831 55.4
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 3.4e-233 812.4 828 55.9
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 2.9e-232 809.3 835 54.4
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 1.9e-231 806.6 783 56.4
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 7.2e-231 804.7 831 54.6
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 2.1e-230 803.1 835 54.1
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 1.4e-229 800.4 902 53.0
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 2.0e-228 796.6 829 54.6
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 5.3e-226 788.5 859 52.2
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 5.9e-225 785.0 830 53.4
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 1.1e-223 780.8 830 52.3
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 5.5e-223 778.5 877 55.1
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 5.5e-223 778.5 669 62.2
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.6e-222 776.9 772 56.1
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 2.1e-222 776.5 844 52.1
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 6.7e-221 771.5 754 57.2
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 2.6e-220 769.6 818 52.3
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 7.4e-220 768.1 829 52.6
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 1.3e-219 767.3 829 52.8
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 2.2e-219 766.5 751 55.3
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 2.8e-219 766.1 825 52.2
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 2.8e-219 766.1 823 50.9
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 3.7e-219 765.8 824 51.5
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 9.1e-218 761.1 816 52.5
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 9.1e-218 761.1 764 55.0
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 1.5e-217 760.4 841 53.2
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 1.7e-216 756.9 773 55.4
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 2.2e-216 756.5 816 51.6
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 2.9e-216 756.1 825 52.4
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 1.1e-215 754.2 752 54.7
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 1.1e-215 754.2 832 51.4
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 1.9e-215 753.4 752 54.7
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 3.2e-215 752.7 815 51.7
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 5.5e-215 751.9 751 54.2
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 4.7e-214 748.8 775 53.3
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 8.0e-214 748.0 741 54.4
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.4e-213 747.3 773 55.2
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 3.9e-213 745.7 728 55.4
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.5e-212 743.8 882 50.3
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 9.7e-212 741.1 837 49.2
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 9.7e-212 741.1 743 55.6
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 4.8e-211 738.8 826 50.8
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 1.4e-210 737.3 814 50.2
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 1.8e-210 736.9 828 50.5
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 9.1e-210 734.6 774 53.4
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 1.2e-209 734.2 833 51.1
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 3.5e-209 732.6 816 50.5
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 4.5e-209 732.3 746 54.0
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 5.9e-209 731.9 827 49.8
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 2.2e-208 729.9 753 53.8
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 5.5e-207 725.3 769 52.7
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 9.4e-207 724.5 821 50.3
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 2.3e-205 719.9 805 50.7
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 2.6e-204 716.5 864 48.0
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 4.4e-204 715.7 909 48.0
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 3.7e-203 712.6 744 53.6
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 2.4e-202 709.9 882 49.2
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 7.7e-201 704.9 804 51.2
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 1.0e-200 704.5 756 53.7
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 2.9e-200 703.0 825 49.6
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 6.5e-200 701.8 828 49.3
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 1.1e-199 701.0 729 52.5
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 5.5e-199 698.7 671 57.1
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 5.5e-199 698.7 762 51.0
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 3.6e-198 696.0 728 51.8
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 3.6e-198 696.0 783 49.4
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 4.0e-197 692.6 801 50.6
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 1.5e-196 690.6 812 49.8
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 1.4e-194 684.1 752 51.3
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 2.4e-194 683.3 861 47.6
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 7.0e-194 681.8 803 47.9
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 9.1e-194 681.4 762 50.9
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 6.1e-190 668.7 729 50.8
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 1.0e-189 667.9 788 48.4
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 4.9e-187 659.1 790 48.6
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 6.3e-187 658.7 787 48.2
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 1.8e-186 657.1 791 48.2
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 1.8e-186 657.1 791 48.2
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 2.4e-186 656.8 805 47.3
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 5.4e-186 655.6 597 58.8
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 7.0e-186 655.2 805 47.2
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 4.6e-185 652.5 650 55.7
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 1.0e-184 651.4 762 49.3
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 1.0e-184 651.4 791 47.9
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 4.1e-178 629.4 786 48.3
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 1.9e-175 620.5 793 47.3
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 9.5e-175 618.2 793 48.2
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 6.0e-169 599.0 732 48.0
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 9.5e-167 591.7 813 43.1
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 2.8e-166 590.1 789 46.6
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 2.2e-163 580.5 780 46.4
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 3.3e-159 566.6 703 48.1
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.4e-154 551.2 508 58.9
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 1.9e-130 471.1 707 43.0
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 6.3e-126 456.1 586 46.9
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 4.8e-118 429.9 354 60.2
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 4.8e-118 429.9 771 38.5
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 3.6e-113 413.7 863 36.4
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 4.3e-111 406.8 821 36.8
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 1.8e-96 358.2 765 35.0
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 1.3e-86 325.5 412 46.8
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 4.4e-79 300.4 371 48.0
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 1.6e-68 265.4 935 28.7
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 3.6e-49 201.1 199 55.3
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 3.5e-36 157.9 342 37.7
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.1e-34 152.9 175 50.3
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 1.9e-29 135.6 268 34.7
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.6e-28 132.5 154 51.3
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.3e-25 122.9 664 24.1
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 7.6e-23 113.6 124 52.4
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 2.0e-15 89.0 283 32.9
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 9.6e-10 70.1 89 39.3
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 2.8e-09 68.6 95 40.0
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 3.7e-09 68.2 95 38.9
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 1.1e-08 66.6 62 46.8
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 2.4e-08 65.5 95 38.9
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 3.1e-08 65.1 91 40.7
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 5.3e-08 64.3 62 46.8
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 5.3e-08 64.3 63 42.9
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 6.9e-08 63.9 66 43.9
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 6.9e-08 63.9 64 46.9
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 6.9e-08 63.9 64 46.9
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 6.9e-08 63.9 89 38.2
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 9.0e-08 63.5 62 45.2
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 9.0e-08 63.5 66 47.0
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 1.2e-07 63.2 64 45.3
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.5e-07 62.8 89 39.3
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 2.0e-07 62.4 269 25.7
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 2.0e-07 62.4 64 43.8
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 2.0e-07 62.4 89 39.3
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 2.0e-07 62.4 89 38.2
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 5.9e-07 60.8 90 37.8
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 5.9e-07 60.8 81 39.5
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 7.6e-07 60.5 95 37.9
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 1.0e-06 60.1 88 37.5
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 1.0e-06 60.1 89 37.1
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 1.3e-06 59.7 89 38.2
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 1.3e-06 59.7 89 38.2
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 1.7e-06 59.3 81 38.3
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 2.9e-06 58.5 91 38.5
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 2.9e-06 58.5 80 37.5
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 2.9e-06 58.5 90 37.8
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 2.9e-06 58.5 90 36.7
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 2.9e-06 58.5 55 50.9
ECA246G3190 Erigeron canadensis HOM05D000874 ORTHO05D001267 3.8e-06 58.2 96 34.4
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 3.8e-06 58.2 88 36.4
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 3.8e-06 58.2 89 37.1
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 5.0e-06 57.8 89 36.0
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 6.5e-06 57.4 64 45.3
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 6.5e-06 57.4 89 37.1
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 8.5e-06 57.0 89 36.0


User provided reference genes

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