Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia12773 Actinidia chinensis HOM05D000218 ORTHO05D000125 6.4e-35 150.2 76 100.0
Actinidia07372 Actinidia chinensis HOM05D000218 ORTHO05D000125 1.8e-13 79.0 39 97.4
CARHR030810 Cardamine hirsuta HOM05D000218 ORTHO05D000125 4.4e-12 74.3 39 92.3
Sp1g27180 Schrenkiella parvula HOM05D000218 ORTHO05D000125 4.4e-12 74.3 39 92.3
Hma1.2p1_0539F.1_g174610 Hydrangea macrophylla HOM05D000218 ORTHO05D000125 5.8e-12 73.9 39 97.4
CSS0010167 Camellia sinensis var. sinensis HOM05D000218 ORTHO05D000125 9.9e-12 73.2 35 97.1
CSS0027193 Camellia sinensis var. sinensis HOM05D000218 ORTHO05D000125 9.9e-12 73.2 35 97.1
CiPaw.11G062900 Carya illinoinensis HOM05D000218 ORTHO05D000125 9.9e-12 73.2 35 97.1
MELO3C019642.2 Cucumis melo HOM05D000218 ORTHO05D000125 9.9e-12 73.2 35 97.1
FvH4_6g21361 Fragaria vesca HOM05D000218 ORTHO05D000125 9.9e-12 73.2 35 97.1
MD14G1049000 Malus domestica HOM05D000218 ORTHO05D000125 9.9e-12 73.2 35 97.1
Prupe.7G086300 Prunus persica HOM05D000218 ORTHO05D000125 9.9e-12 73.2 35 97.1
QL04p080254 Quercus lobata HOM05D000218 ORTHO05D000125 9.9e-12 73.2 35 97.1
QL04p080296 Quercus lobata HOM05D000218 ORTHO05D000125 9.9e-12 73.2 35 97.1
RcHm_v2.0_Chr3g0477981 Rosa chinensis HOM05D000218 ORTHO05D000125 9.9e-12 73.2 35 97.1
RcHm_v2.0_Chr3g0478131 Rosa chinensis HOM05D000218 ORTHO05D000125 9.9e-12 73.2 35 97.1
RcHm_v2.0_Chr3g0478371 Rosa chinensis HOM05D000218 ORTHO05D000125 9.9e-12 73.2 35 97.1
THA.LOC104814371 Tarenaya hassleriana HOM05D000218 ORTHO05D000125 9.9e-12 73.2 37 91.9
AT1G31340 Arabidopsis thaliana HOM05D000218 ORTHO05D000125 1.3e-11 72.8 39 92.3
MSTRG.1623 Avicennia marina HOM05D000218 ORTHO05D000125 1.3e-11 72.8 35 97.1
BcaB03g13797 Brassica carinata HOM05D000218 ORTHO05D000125 1.3e-11 72.8 39 92.3
A07p09420 Brassica napus HOM05D000218 ORTHO05D000125 1.3e-11 72.8 39 92.3
C07p14490 Brassica napus HOM05D000218 ORTHO05D000125 1.3e-11 72.8 39 92.3
BolC7t41948H Brassica oleracea HOM05D000218 ORTHO05D000125 1.3e-11 72.8 39 92.3
BraA07t28737Z Brassica rapa HOM05D000218 ORTHO05D000125 1.3e-11 72.8 39 92.3
CSS0049196 Camellia sinensis var. sinensis HOM05D000218 ORTHO05D000125 1.3e-11 72.8 34 100.0
CANSAT80G1892 Cannabis sativa HOM05D000218 ORTHO05D000125 1.3e-11 72.8 35 97.1
Cc05_g16280 Coffea canephora HOM05D000218 ORTHO05D000125 1.3e-11 72.8 34 100.0
Cc09_g03100 Coffea canephora HOM05D000218 ORTHO05D000125 1.3e-11 72.8 34 100.0
CsaV3_6G013580 Cucumis sativus L. HOM05D000218 ORTHO05D000125 1.3e-11 72.8 34 100.0
ECA247G0404 Erigeron canadensis HOM05D000218 ORTHO05D000125 1.3e-11 72.8 35 97.1
Thhalv10008986m.g Eutrema salsugineum HOM05D000218 ORTHO05D000125 1.3e-11 72.8 39 92.3
Lj1C911T2 Lonicera japonica HOM05D000218 ORTHO05D000125 1.3e-11 72.8 34 100.0
Rhsim06G0241500 Rhododendron simsii HOM05D000218 ORTHO05D000125 1.3e-11 72.8 34 100.0
Sed0000650 Sechium edule HOM05D000218 ORTHO05D000125 1.3e-11 72.8 34 100.0
Sed0028077 Sechium edule HOM05D000218 ORTHO05D000125 1.3e-11 72.8 34 100.0
BcaB02g09405 Brassica carinata HOM05D000218 ORTHO05D000125 1.7e-11 72.4 36 94.4
Thecc.07G168600 Theobroma cacao HOM05D000218 ORTHO05D000125 1.7e-11 72.4 35 94.3
MD10G1205300 Malus domestica HOM05D000218 ORTHO05D000125 2.2e-11 72.0 35 94.3
Manes.02G185300 Manihot esculenta HOM05D000218 ORTHO05D000125 2.2e-11 72.0 35 94.3
Potri.007G067500 Populus trichocarpa HOM05D000218 ORTHO05D000125 2.2e-11 72.0 35 94.3
GSVIVG01036803001 Vitis vinifera HOM05D000218 ORTHO05D000125 2.2e-11 72.0 37 89.2
FvH4_3g15350 Fragaria vesca HOM05D000218 ORTHO05D000125 2.9e-11 71.6 35 94.3
MD12G1050500 Malus domestica HOM05D000218 ORTHO05D000125 2.9e-11 71.6 35 94.3
Manes.18G096100 Manihot esculenta HOM05D000218 ORTHO05D000125 2.9e-11 71.6 35 94.3
Potri.002G062500 Populus trichocarpa HOM05D000218 ORTHO05D000125 2.9e-11 71.6 34 97.1
Potri.005G096700 Populus trichocarpa HOM05D000218 ORTHO05D000125 2.9e-11 71.6 34 97.1
Potri.005G198700 Populus trichocarpa HOM05D000218 ORTHO05D000125 2.9e-11 71.6 34 97.1
RcHm_v2.0_Chr3g0478171 Rosa chinensis HOM05D000218 ORTHO05D000125 2.9e-11 71.6 35 94.3
RcHm_v2.0_Chr3g0483791 Rosa chinensis HOM05D000218 ORTHO05D000125 2.9e-11 71.6 35 94.3
RcHm_v2.0_Chr5g0025791 Rosa chinensis HOM05D000218 ORTHO05D000125 2.9e-11 71.6 35 94.3
Sabra05G0079400 Salix brachista HOM05D000218 ORTHO05D000125 2.9e-11 71.6 34 97.1
Sabra05G0151300 Salix brachista HOM05D000218 ORTHO05D000125 2.9e-11 71.6 34 97.1
TWI73G0402 Tripterygium wilfordii HOM05D000218 ORTHO05D000125 2.9e-11 71.6 35 94.3
COL.COLO4_07010 Corchorus olitorius HOM05D000218 ORTHO05D000125 3.8e-11 71.2 34 97.1
Migut.E01435 Erythranthe guttata HOM05D000218 ORTHO05D000125 3.8e-11 71.2 39 89.7
Lalb_Chr20g0108601 Lupinus albus HOM05D000218 ORTHO05D000125 3.8e-11 71.2 34 97.1
MBI16_g26725_MAGBIO Magnolia biondii HOM05D000218 ORTHO05D000125 3.8e-11 71.2 35 94.3
Medtr4g073580 Medicago truncatula HOM05D000218 ORTHO05D000125 3.8e-11 71.2 35 94.3
Medtr5g092700 Medicago truncatula HOM05D000218 ORTHO05D000125 3.8e-11 71.2 35 94.3
Atru.chr1.124 Acer truncatum HOM05D000218 ORTHO05D000125 4.9e-11 70.9 35 94.3
MSTRG.13954 Avicennia marina HOM05D000218 ORTHO05D000125 4.9e-11 70.9 35 94.3
BcaB04g18161 Brassica carinata HOM05D000218 ORTHO05D000125 4.9e-11 70.9 35 94.3
BcaB07g32796 Brassica carinata HOM05D000218 ORTHO05D000125 4.9e-11 70.9 38 89.5
BcaC07g37764 Brassica carinata HOM05D000218 ORTHO05D000125 4.9e-11 70.9 35 94.3
A08p10620 Brassica napus HOM05D000218 ORTHO05D000125 4.9e-11 70.9 35 94.3
BolC8t48150H Brassica oleracea HOM05D000218 ORTHO05D000125 4.9e-11 70.9 35 94.3
BraA08t33061Z Brassica rapa HOM05D000218 ORTHO05D000125 4.9e-11 70.9 35 94.3
CAN.G943.49 Capsicum annuum HOM05D000218 ORTHO05D000125 4.9e-11 70.9 35 94.3
PGR031G2854 Punica granatum HOM05D000218 ORTHO05D000125 4.9e-11 70.9 35 94.3
Aa31LG9G15930 Aethionema arabicum HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Aa31LG9G15950 Aethionema arabicum HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Ah.15g095590 Amaranthus hybridus HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
EL10Ac7g18009 Beta vulgaris HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
BcaC02g11685 Brassica carinata HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
A05p10040 Brassica napus HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
BolC4t22888H Brassica oleracea HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
BraA05t19945Z Brassica rapa HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Carub.0004s1735 Capsella rubella HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
CAN.G492.74 Capsicum annuum HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
CARHR129860 Cardamine hirsuta HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
AUR62001215 Chenopodium quinoa HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
AUR62022110 Chenopodium quinoa HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Duzib213G0121 Durio zibethinus HOM05D000218 ORTHO05D000125 6.4e-11 70.5 35 91.4
ECA238G0145 Erigeron canadensis HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Migut.A00400 Erythranthe guttata HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Thhalv10017351m.g Eutrema salsugineum HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
HanXRQChr04g0115051 Helianthus annuus HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
HanXRQChr14g0439841 Helianthus annuus HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Oeu019708.3 Olea europaea HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Oeu051684.1 Olea europaea HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Os06g0650100 Oryza sativa ssp. japonica HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Os09g0420800 Oryza sativa ssp. japonica HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
PSO063G0129 Papaver somniferum HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
PSO832G3215 Papaver somniferum HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Sp4g17880 Schrenkiella parvula HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
SEGI_37235 Sequoiadendron giganteum HOM05D000218 ORTHO05D000125 6.4e-11 70.5 39 84.6
Solyc10g005560.3 Solanum lycopersicum HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Sopen10g001540 Solanum pennellii HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
PGSC0003DMG400011242 Solanum tuberosum HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
THA.LOC104798542 Tarenaya hassleriana HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Thecc.07G169000 Theobroma cacao HOM05D000218 ORTHO05D000125 6.4e-11 70.5 35 91.4
Zm00001eb275020 Zea mays HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Zm00001eb313000 Zea mays HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Zm00001eb349470 Zea mays HOM05D000218 ORTHO05D000125 6.4e-11 70.5 34 97.1
Ah.01g007720 Amaranthus hybridus HOM05D000218 ORTHO05D000125 1.1e-10 69.7 35 91.4
AL1G49690 Arabidopsis lyrata HOM05D000218 ORTHO05D000125 1.1e-10 69.7 39 89.7
Carub.0001s2979 Capsella rubella HOM05D000218 ORTHO05D000125 1.1e-10 69.7 39 89.7
CAN.G1041.28 Capsicum annuum HOM05D000218 ORTHO05D000125 1.1e-10 69.7 34 94.1
CDE01G0644 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 1.1e-10 69.7 37 89.2
CDE12G0717 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 1.1e-10 69.7 37 89.2
Ciclev10013001m.g Citrus clementina HOM05D000218 ORTHO05D000125 1.1e-10 69.7 35 91.4
COL.COLO4_12148 Corchorus olitorius HOM05D000218 ORTHO05D000125 1.1e-10 69.7 35 91.4
Nn3g18630 Nelumbo nucifera HOM05D000218 ORTHO05D000125 1.1e-10 69.7 35 91.4
RcHm_v2.0_Chr3g0478541 Rosa chinensis HOM05D000218 ORTHO05D000125 1.1e-10 69.7 35 91.4
Thecc.01G145100 Theobroma cacao HOM05D000218 ORTHO05D000125 1.1e-10 69.7 35 91.4
TWI34G0170 Tripterygium wilfordii HOM05D000218 ORTHO05D000125 1.1e-10 69.7 35 91.4
CDE11G1079 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 1.4e-10 69.3 34 94.1
Ciclev10006134m.g Citrus clementina HOM05D000218 ORTHO05D000125 1.4e-10 69.3 34 94.1
Duzib187G0508 Durio zibethinus HOM05D000218 ORTHO05D000125 1.4e-10 69.3 34 94.1
Duzib264G0762 Durio zibethinus HOM05D000218 ORTHO05D000125 1.4e-10 69.3 34 94.1
Eucgr.F04448 Eucalyptus grandis HOM05D000218 ORTHO05D000125 1.4e-10 69.3 34 94.1
Gohir.A05G381200 Gossypium hirsutum HOM05D000218 ORTHO05D000125 1.4e-10 69.3 34 94.1
Gohir.A05G381300 Gossypium hirsutum HOM05D000218 ORTHO05D000125 1.4e-10 69.3 34 94.1
Gohir.D04G034100 Gossypium hirsutum HOM05D000218 ORTHO05D000125 1.4e-10 69.3 34 94.1
Gohir.D04G034200 Gossypium hirsutum HOM05D000218 ORTHO05D000125 1.4e-10 69.3 34 94.1
Gorai.012G038400 Gossypium raimondii HOM05D000218 ORTHO05D000125 1.4e-10 69.3 34 94.1
Gorai.N024300 Gossypium raimondii HOM05D000218 ORTHO05D000125 1.4e-10 69.3 34 94.1
Lj3g0027838 Lotus japonicus HOM05D000218 ORTHO05D000125 1.4e-10 69.3 35 91.4
TWI53G1552 Tripterygium wilfordii HOM05D000218 ORTHO05D000125 1.4e-10 69.3 35 91.4
Aqoxy3G03025 Aquilegia oxysepala HOM05D000218 ORTHO05D000125 1.9e-10 68.9 34 94.1
arahy.Tifrunner.gnm1.ann1.CRR2EY Arachis hypogaea HOM05D000218 ORTHO05D000125 1.9e-10 68.9 34 94.1
arahy.Tifrunner.gnm1.ann1.FWH2UP Arachis hypogaea HOM05D000218 ORTHO05D000125 1.9e-10 68.9 34 94.1
arahy.Tifrunner.gnm1.ann1.SN0HF9 Arachis hypogaea HOM05D000218 ORTHO05D000125 1.9e-10 68.9 34 94.1
arahy.Tifrunner.gnm1.ann1.UIM2NE Arachis hypogaea HOM05D000218 ORTHO05D000125 1.9e-10 68.9 34 94.1
Glyma.08G168200 Glycine max HOM05D000218 ORTHO05D000125 1.9e-10 68.9 34 94.1
Glyma.15G259200 Glycine max HOM05D000218 ORTHO05D000125 1.9e-10 68.9 34 94.1
Lalb_Chr01g0015841 Lupinus albus HOM05D000218 ORTHO05D000125 1.9e-10 68.9 34 94.1
Lalb_Chr25g0284781 Lupinus albus HOM05D000218 ORTHO05D000125 1.9e-10 68.9 34 94.1
PSO675G0099 Papaver somniferum HOM05D000218 ORTHO05D000125 1.9e-10 68.9 34 94.1
Phvul.005G060100 Phaseolus vulgaris HOM05D000218 ORTHO05D000125 1.9e-10 68.9 34 94.1
Psat7g175520 Pisum sativum HOM05D000218 ORTHO05D000125 1.9e-10 68.9 34 94.1
HPP92_021987 Vanilla planifolia HOM05D000218 ORTHO05D000125 1.9e-10 68.9 34 94.1
VMungo1080G1823 Vigna mungo HOM05D000218 ORTHO05D000125 1.9e-10 68.9 34 94.1
ATR0307G007 Amborella trichopoda HOM05D000218 ORTHO05D000125 2.4e-10 68.6 36 86.1
Pp3c16_3920 Physcomitrium patens HOM05D000218 ORTHO05D000125 3.2e-10 68.2 34 91.2
SMO115G0084 Selaginella moellendorffii HOM05D000218 ORTHO05D000125 3.2e-10 68.2 36 86.1
RcHm_v2.0_Chr4g0426431 Rosa chinensis HOM05D000218 ORTHO05D000125 4.1e-10 67.8 35 88.6
AL4G31710 Arabidopsis lyrata HOM05D000218 ORTHO05D000125 5.4e-10 67.4 34 94.1
AT2G35635 Arabidopsis thaliana HOM05D000218 ORTHO05D000125 5.4e-10 67.4 34 94.1
MSTRG.25817 Avicennia marina HOM05D000218 ORTHO05D000125 5.4e-10 67.4 34 91.2
SGA_v2.0_scaffold169G38595 Striga asiatica HOM05D000218 ORTHO05D000125 5.4e-10 67.4 35 88.6
Mapoly0008s0043 Marchantia polymorpha HOM05D000218 ORTHO05D000125 7.1e-10 67.0 34 88.2
Pp3c25_14180 Physcomitrium patens HOM05D000218 ORTHO05D000125 7.1e-10 67.0 34 88.2
Cre09.g396400 Chlamydomonas reinhardtii HOM05D000218 ORTHO05D000125 1.6e-09 65.9 34 88.2
RcHm_v2.0_Chr3g0478011 Rosa chinensis HOM05D000218 ORTHO05D000125 1.6e-09 65.9 35 88.6
PRCOL_00005939 Prasinoderma coloniale HOM05D000218 ORTHO05D000125 3.5e-09 64.7 36 80.6
MCO15G078 Micromonas commoda HOM05D000218 ORTHO05D000125 4.6e-09 64.3 34 85.3
RcHm_v2.0_Chr0c32g0501481 Rosa chinensis HOM05D000218 ORTHO05D000125 4.6e-09 64.3 33 90.9
SEGI_08116 Sequoiadendron giganteum HOM05D000218 ORTHO05D000125 4.6e-09 64.3 34 85.3
RcHm_v2.0_Chr3g0478321 Rosa chinensis HOM05D000218 ORTHO05D000125 1.0e-08 63.2 35 88.6
BcaB02g06438 Brassica carinata HOM05D000218 ORTHO05D000125 1.3e-08 62.8 35 77.1
Prupe.4G136400 Prunus persica HOM05D000218 ORTHO05D000125 1.7e-08 62.4 31 93.5
Rhsim04G0004500 Rhododendron simsii HOM05D000218 ORTHO05D000125 2.3e-08 62.0 33 87.9
QL05p048335 Quercus lobata HOM05D000218 ORTHO05D000125 3.0e-08 61.6 34 79.4
C08p36800 Brassica napus HOM05D000147 ORTHO05D011672 6.6e-08 60.5 38 76.3
BraA06t24137Z Brassica rapa HOM05D000218 ORTHO05D000125 6.6e-08 60.5 34 79.4
BcaC05g25236 Brassica carinata HOM05D000218 ORTHO05D000125 8.7e-08 60.1 34 76.5
BolC5t29867H Brassica oleracea HOM05D000218 ORTHO05D000125 8.7e-08 60.1 34 76.5
Cfa025169 Carpinus fangiana HOM05D000218 ORTHO05D000125 8.7e-08 60.1 34 73.5
Thhalv10009383m.g Eutrema salsugineum HOM05D000218 ORTHO05D000125 1.5e-07 59.3 34 79.4
BcaC04g19583 Brassica carinata HOM05D000443 ORTHO05D001278 1.9e-07 58.9 39 76.9
CAN.G619.37 Capsicum annuum HOM05D000218 ORTHO05D000125 1.9e-07 58.9 34 79.4
RcHm_v2.0_Chr4g0426441 Rosa chinensis HOM05D000218 ORTHO05D000125 1.9e-07 58.9 35 77.1
AT1G11980 Arabidopsis thaliana HOM05D000218 ORTHO05D000125 2.5e-07 58.5 34 76.5
BraA06t26285Z Brassica rapa HOM05D000628 ORTHO05D011672 4.3e-07 57.8 39 74.4
BolC9t58278H Brassica oleracea HOM05D000147 ORTHO05D011672 5.6e-07 57.4 39 76.9
Thhalv10027057m.g Eutrema salsugineum HOM05D000218 ORTHO05D000125 9.6e-07 56.6 29 86.2
BcaB05g22787 Brassica carinata HOM05D000218 ORTHO05D000125 1.6e-06 55.8 39 71.8
Mapoly0045s0157 Marchantia polymorpha HOM05D000218 ORTHO05D000125 1.6e-06 55.8 34 67.6
C09p54080 Brassica napus HOM05D000628 ORTHO05D011672 2.1e-06 55.5 39 74.4
TWI15G0712 Tripterygium wilfordii HOM05D000218 ORTHO05D000125 2.1e-06 55.5 33 75.8
AL1G23190 Arabidopsis lyrata HOM05D000218 ORTHO05D000125 2.8e-06 55.1 33 72.7
BcaB02g11117 Brassica carinata HOM05D000218 ORTHO05D000125 4.7e-06 54.3 31 80.6


User provided reference genes

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