Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.4e-122 443.0 220 100.0
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.4e-111 406.4 220 89.5
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 2.1e-110 402.5 220 88.6
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 3.5e-110 401.7 220 88.6
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.1e-109 397.9 220 87.3
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 2.6e-105 385.6 220 83.6
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 7.1e-103 377.5 221 82.4
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 7.1e-103 377.5 221 82.4
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 1.6e-102 376.3 221 81.9
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 3.5e-102 375.2 220 80.0
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.5e-100 369.8 221 80.1
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 6.2e-99 364.4 218 81.2
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 5.3e-98 361.3 216 81.0
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.3e-96 356.7 216 79.6
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 4.9e-96 354.8 216 78.7
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 8.4e-96 354.0 222 76.1
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 8.4e-96 354.0 218 76.1
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.4e-95 353.2 215 76.7
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.4e-95 353.2 215 76.7
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 3.2e-95 352.1 218 77.5
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 4.2e-95 351.7 240 73.3
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 5.4e-95 351.3 220 78.6
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 5.4e-95 351.3 216 77.3
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 1.2e-94 350.1 222 75.7
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 1.6e-94 349.7 218 75.7
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 2.7e-94 349.0 218 75.7
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.6e-94 348.2 220 73.2
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 4.6e-94 348.2 215 74.0
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 2.3e-93 345.9 218 73.9
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 8.7e-93 344.0 215 73.5
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.1e-92 343.6 218 73.4
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 1.5e-92 343.2 218 72.9
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 3.3e-92 342.0 218 73.9
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 4.3e-92 341.7 217 74.2
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 5.6e-92 341.3 218 73.4
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 7.4e-92 340.9 218 74.3
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 7.4e-92 340.9 215 72.1
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.3e-91 340.1 219 72.6
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.3e-91 340.1 218 72.9
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.6e-91 339.7 219 75.3
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 3.6e-91 338.6 220 74.1
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.1e-90 337.0 218 72.9
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.8e-90 336.3 219 70.3
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 1.8e-90 336.3 218 71.6
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.8e-90 336.3 219 71.2
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 3.1e-90 335.5 218 72.9
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 4.0e-90 335.1 215 72.1
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 6.9e-90 334.3 220 70.9
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 9.0e-90 334.0 221 74.2
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.2e-89 333.6 218 69.7
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 4.5e-89 331.6 218 69.7
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.2e-88 329.3 217 71.4
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 2.9e-88 328.9 237 70.0
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 3.8e-88 328.6 255 64.3
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 3.8e-88 328.6 255 64.3
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.4e-88 327.8 217 71.0
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 1.9e-87 326.2 217 70.5
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 9.3e-87 323.9 213 70.4
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.2e-86 323.6 250 66.0
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 1.6e-86 323.2 214 67.8
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 2.7e-86 322.4 220 68.2
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 4.6e-86 321.6 220 66.8
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 6.0e-86 321.2 215 71.2
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 7.9e-86 320.9 221 67.4
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 7.9e-86 320.9 217 71.0
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.3e-85 320.1 221 69.7
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.3e-85 320.1 215 67.9
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.8e-85 319.7 220 71.4
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 2.3e-85 319.3 218 72.5
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 3.9e-85 318.5 218 67.9
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 3.9e-85 318.5 218 67.9
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.5e-84 316.6 220 69.1
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 4.3e-84 315.1 216 67.6
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.8e-83 312.4 218 65.6
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 8.1e-83 310.8 217 67.3
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 6.9e-82 307.8 215 67.9
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-81 305.4 219 62.1
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 5.8e-81 304.7 215 65.6
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.3e-80 303.5 215 64.2
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 2.9e-80 302.4 260 56.9
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 6.5e-80 301.2 215 63.7
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 8.4e-80 300.8 215 64.2
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 2.5e-79 299.3 220 61.4
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.5e-79 299.3 213 64.8
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 2.5e-79 299.3 245 59.6
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 3.2e-79 298.9 215 64.2
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 3.2e-79 298.9 220 63.6
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 3.2e-79 298.9 220 63.6
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 3.2e-79 298.9 220 63.6
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.7e-78 295.8 197 69.0
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.7e-78 295.8 210 67.6
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 6.0e-78 294.7 216 63.9
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.0e-77 293.9 220 59.5
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 1.0e-77 293.9 217 62.7
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.8e-77 293.1 217 62.7
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 6.7e-77 291.2 217 62.2
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.5e-76 290.0 215 60.5
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 2.5e-76 289.3 215 60.9
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.7e-75 285.4 215 60.5
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 9.0e-74 280.8 211 60.2
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.2e-70 270.4 178 69.7
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 6.1e-70 268.1 213 62.4
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.7e-69 264.6 216 56.5
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-67 260.0 215 55.8
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.8e-66 256.5 225 52.9
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 9.0e-66 254.2 169 75.1
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 2.6e-65 252.7 225 50.7
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.1e-63 247.3 170 70.0
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 3.9e-61 238.8 158 72.2
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 5.1e-61 238.4 141 77.3
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 4.4e-60 235.3 219 56.6
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 4.4e-60 235.3 190 62.6
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.7e-60 234.2 215 52.1
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.7e-59 233.4 168 67.3
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.7e-59 233.4 182 59.9
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.3e-59 231.5 161 68.9
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.3e-59 231.5 161 68.9
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 2.4e-58 229.6 213 47.9
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.1e-58 228.8 141 75.2
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 9.1e-58 227.6 211 51.7
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-57 226.5 184 57.1
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 4.5e-57 225.3 142 73.9
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.7e-56 223.4 210 46.7
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-55 220.7 221 49.3
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-54 216.5 214 50.5
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.9e-54 214.5 169 57.4
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 3.9e-53 212.2 203 49.3
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 2.6e-52 209.5 165 63.0
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 3.1e-50 202.6 208 43.3
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 1.2e-49 200.7 159 59.7
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 5.9e-49 198.4 168 57.1
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 7.2e-47 191.4 191 46.1
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-46 189.1 143 59.4
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 5.2e-45 185.3 220 36.4
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 2.0e-44 183.3 149 61.7
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 9.7e-44 181.0 122 72.1
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.1e-42 176.0 166 52.4
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.0e-41 173.3 203 42.9
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 4.5e-41 172.2 133 62.4
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 3.2e-39 166.0 128 68.8
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.0e-37 161.0 160 53.1
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.2e-37 158.7 124 60.5
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.3e-35 151.8 133 55.6
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.1e-34 151.0 123 60.2
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-31 141.0 134 50.7
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.2e-31 139.4 117 58.1
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 2.8e-27 126.3 101 60.4
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 2.1e-22 110.2 90 61.1
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.3e-21 106.7 71 76.1
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.0e-21 106.3 143 39.9
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 2.6e-20 103.2 78 64.1
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.4e-18 97.4 130 40.8
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 5.9e-17 92.0 52 67.3
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.1e-15 87.8 82 58.5
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.6e-14 84.0 74 50.0
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 4.0e-13 79.3 52 57.7
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 1.2e-12 77.8 54 75.9
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 1.2e-12 77.8 54 75.9
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 1.3e-11 74.3 53 73.6
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 1.4e-10 70.9 102 39.2
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 2.4e-10 70.1 162 29.0
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-08 63.5 64 48.4


User provided reference genes

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