Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 2.6e-166 588.6 286 100.0
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 2.0e-73 280.0 318 53.8
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 3.9e-69 265.8 308 51.6
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 7.4e-68 261.5 309 49.2
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 8.1e-67 258.1 307 51.5
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 5.3e-66 255.4 307 49.5
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 5.3e-66 255.4 327 46.8
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 2.0e-65 253.4 258 54.7
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 2.0e-65 253.4 258 55.0
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 3.4e-65 252.7 258 54.3
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 1.0e-64 251.1 264 53.4
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 2.2e-64 250.0 269 53.5
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 1.0e-61 241.1 259 52.1
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 4.5e-49 199.1 190 57.9
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 4.5e-49 199.1 244 49.2
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 4.5e-49 199.1 190 57.9
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 5.0e-48 195.7 190 56.8
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 1.9e-47 193.7 190 56.3
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 5.0e-32 142.5 231 40.3
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 8.5e-32 141.7 232 40.9
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.2e-30 137.9 218 41.3
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 4.7e-30 136.0 199 42.2
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 6.1e-30 135.6 236 37.3
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 1.0e-29 134.8 216 39.4
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.2e-28 131.3 258 38.4
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 3.3e-28 129.8 226 38.5
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.8e-27 126.7 242 36.4
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 3.7e-27 126.3 209 36.8
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 4.8e-27 125.9 250 36.0
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 8.2e-27 125.2 236 34.7
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.2e-27 125.2 251 34.7
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 2.4e-26 123.6 276 33.7
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 2.4e-26 123.6 276 33.7
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 2.7e-25 120.2 244 33.2
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 3.5e-25 119.8 238 33.2
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.3e-24 117.9 247 33.2
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 1.3e-24 117.9 246 33.3
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 2.2e-24 117.1 246 36.2
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.0e-24 115.9 159 45.9
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 6.5e-24 115.5 272 33.5
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 8.5e-24 115.2 248 33.5
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.1e-23 114.8 244 30.7
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 1.1e-23 114.8 240 35.4
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 2.5e-23 113.6 239 31.4
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.2e-23 113.2 277 31.4
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 3.2e-23 113.2 244 33.6
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 5.5e-23 112.5 253 33.2
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.2e-23 112.1 277 32.1
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 7.2e-23 112.1 246 30.5
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.6e-22 110.9 217 33.6
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 2.7e-22 110.2 275 29.5
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 2.7e-22 110.2 234 32.1
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 6.1e-22 109.0 271 27.7
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 6.1e-22 109.0 214 36.0
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.8e-21 107.5 297 30.3
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 1.8e-21 107.5 113 50.4
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.8e-21 107.5 223 30.5
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 8.8e-21 105.1 270 30.7
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 1.5e-20 104.4 253 29.6
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 1.5e-20 104.4 246 30.1
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 2.0e-20 104.0 130 46.2
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 7.5e-20 102.1 204 33.8
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.3e-19 101.3 248 31.5
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 1.7e-19 100.9 236 30.5
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 6.3e-19 99.0 237 30.8
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 8.3e-19 98.6 248 29.4
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 2.4e-18 97.1 161 37.3
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 7.0e-18 95.5 141 42.6
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 1.2e-17 94.7 141 41.8
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 4.5e-17 92.8 345 26.4
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 7.7e-17 92.0 203 29.1
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 7.7e-17 92.0 226 30.1
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 1.7e-16 90.9 129 43.4
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-16 90.9 167 37.7
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 2.2e-16 90.5 255 26.7
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 2.9e-16 90.1 125 43.2
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 5.0e-16 89.4 218 33.9
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 4.2e-15 86.3 194 29.9
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 4.2e-15 86.3 155 36.1
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 1.2e-14 84.7 169 29.6
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 2.8e-14 83.6 166 39.8
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 2.8e-14 83.6 166 39.8
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 4.7e-14 82.8 162 40.1
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 8.0e-14 82.0 190 33.7
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 4.0e-13 79.7 210 31.9
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 5.2e-13 79.3 242 29.3
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 1.5e-12 77.8 116 36.2
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 1.5e-12 77.8 116 36.2
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 7.5e-12 75.5 136 30.1
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 1.3e-11 74.7 102 42.2
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 2.2e-11 73.9 179 31.8
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 2.8e-11 73.6 209 29.2
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.8e-11 73.6 147 30.6
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 2.8e-11 73.6 144 33.3
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.9e-11 72.8 208 29.8
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 4.9e-11 72.8 284 23.2
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 6.3e-11 72.4 116 35.3
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 6.3e-11 72.4 109 38.5
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 1.8e-10 70.9 100 42.0
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 3.1e-10 70.1 116 36.2
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 4.1e-10 69.7 236 25.0
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 4.1e-10 69.7 126 34.9
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 5.4e-10 69.3 142 32.4
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 9.2e-10 68.6 111 39.6
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 9.2e-10 68.6 121 37.2
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 9.2e-10 68.6 118 37.3
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 1.2e-09 68.2 118 36.4
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.6e-09 67.8 108 35.2
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 2.0e-09 67.4 159 33.3
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 2.7e-09 67.0 139 32.4
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 3.5e-09 66.6 124 32.3
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 3.5e-09 66.6 108 35.2
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 3.5e-09 66.6 104 39.4
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 4.5e-09 66.2 128 32.8
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 5.9e-09 65.9 129 32.6
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.0e-08 65.1 167 28.7
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.3e-08 64.7 113 34.5
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 1.7e-08 64.3 54 61.1
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 2.3e-08 63.9 137 33.6
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 2.9e-08 63.5 73 47.9
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 2.9e-08 63.5 124 33.1
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 2.9e-08 63.5 123 37.4
BcaB05g22585 Brassica carinata HOM05D006496 ORTHO05D008390 3.8e-08 63.2 151 33.8
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 5.0e-08 62.8 73 47.9
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 6.6e-08 62.4 118 33.9
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 6.6e-08 62.4 142 29.6
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 8.6e-08 62.0 124 35.5
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 8.6e-08 62.0 122 36.9
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 8.6e-08 62.0 60 58.3
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 1.5e-07 61.2 117 34.2
SGA_v2.0_scaffold2G01065 Striga asiatica HOM05D003520 ORTHO05D003332 1.5e-07 61.2 127 33.1
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 1.9e-07 60.8 66 48.5
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.9e-07 60.8 122 36.1
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 1.9e-07 60.8 122 36.1
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 1.9e-07 60.8 115 36.5
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 2.5e-07 60.5 124 33.9
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 3.3e-07 60.1 47 57.4
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 3.3e-07 60.1 122 32.0
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 3.3e-07 60.1 48 54.2
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 3.3e-07 60.1 116 36.2
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 4.3e-07 59.7 137 29.2
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 4.3e-07 59.7 115 33.0
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 5.6e-07 59.3 168 29.8
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 5.6e-07 59.3 130 28.5
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 9.5e-07 58.5 91 42.9
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 1.2e-06 58.2 184 26.6
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 1.6e-06 57.8 133 28.6
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.6e-06 57.8 129 34.1
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 1.6e-06 57.8 137 32.8
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.6e-06 57.8 172 28.5
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.1e-06 57.4 176 26.7
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 3.6e-06 56.6 130 28.5
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 3.6e-06 56.6 121 30.6
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 3.6e-06 56.6 154 30.5
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 4.7e-06 56.2 56 53.6
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 4.7e-06 56.2 176 26.1
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 4.7e-06 56.2 132 28.0
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 4.7e-06 56.2 222 28.4
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 4.7e-06 56.2 54 53.7
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 6.1e-06 55.8 131 29.8
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 6.1e-06 55.8 130 29.2
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 6.1e-06 55.8 123 30.9
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 6.1e-06 55.8 176 26.1
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 8.0e-06 55.5 159 28.3
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 8.0e-06 55.5 59 49.2


User provided reference genes

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