Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc158G50 Aethionema arabicum HOM05D002787 ORTHO05D003506 7.0e-63 243.8 126 100.0
Aa31sc154G80 Aethionema arabicum HOM05D002787 ORTHO05D003506 1.5e-44 183.0 159 65.4
Aa31LG10G11050 Aethionema arabicum HOM05D002787 ORTHO05D003506 2.7e-22 109.0 68 83.8
Aa31LG3G6590 Aethionema arabicum HOM05D002787 ORTHO05D003506 5.1e-21 104.8 149 46.3
Aa31LG6G10330 Aethionema arabicum HOM05D002787 ORTHO05D059120 1.4e-18 96.7 153 43.8
Thhalv10006101m.g Eutrema salsugineum HOM05D002787 ORTHO05D003506 7.6e-17 90.9 99 57.6
Carub.0005s2295 Capsella rubella HOM05D002787 ORTHO05D003506 6.4e-16 87.8 73 64.4
BcaB01g00023 Brassica carinata HOM05D002787 ORTHO05D003506 1.9e-15 86.3 73 60.3
AT3G56170 Arabidopsis thaliana HOM05D002787 ORTHO05D003506 2.4e-15 85.9 73 63.0
CARHR166320 Cardamine hirsuta HOM05D002787 ORTHO05D003506 2.4e-15 85.9 68 64.7
C04p06990 Brassica napus HOM05D002787 ORTHO05D003506 4.2e-15 85.1 92 53.3
BolC4t22320H Brassica oleracea HOM05D002787 ORTHO05D003506 4.2e-15 85.1 92 53.3
Sp5g06330 Schrenkiella parvula HOM05D002787 ORTHO05D003506 4.2e-15 85.1 73 60.3
AL5G37490 Arabidopsis lyrata HOM05D002787 ORTHO05D003506 5.4e-15 84.7 73 61.6
AT2G40410 Arabidopsis thaliana HOM05D002787 ORTHO05D003506 5.4e-15 84.7 83 57.8
A09p49140 Brassica napus HOM05D002787 ORTHO05D003506 5.4e-15 84.7 73 58.9
BraA09t40367Z Brassica rapa HOM05D002787 ORTHO05D003506 5.4e-15 84.7 73 58.9
Carub.0004s2266 Capsella rubella HOM05D002787 ORTHO05D003506 5.4e-15 84.7 83 57.8
BcaC07g39932 Brassica carinata HOM05D002787 ORTHO05D003506 9.3e-15 84.0 68 61.8
C08p31480 Brassica napus HOM05D002787 ORTHO05D003506 9.3e-15 84.0 68 61.8
BolC8t50768H Brassica oleracea HOM05D002787 ORTHO05D003506 9.3e-15 84.0 68 61.8
BraA05t19570Z Brassica rapa HOM05D002787 ORTHO05D003506 2.7e-14 82.4 89 50.6
BcaC02g12156 Brassica carinata HOM05D002787 ORTHO05D003506 4.6e-14 81.6 135 39.3
Gohir.D06G165800 Gossypium hirsutum HOM05D002787 ORTHO05D003506 6.0e-14 81.3 92 52.2
AL4G38230 Arabidopsis lyrata HOM05D002787 ORTHO05D003506 7.9e-14 80.9 63 66.7
Gorai.010G193300 Gossypium raimondii HOM05D002787 ORTHO05D003506 1.0e-13 80.5 92 52.2
Thhalv10016915m.g Eutrema salsugineum HOM05D002787 ORTHO05D003506 1.3e-13 80.1 83 54.2
Sp4g22740 Schrenkiella parvula HOM05D002787 ORTHO05D003506 2.3e-13 79.3 83 55.4
Aa31LG5G19170 Aethionema arabicum HOM05D002787 ORTHO05D003506 3.0e-13 79.0 63 63.5
A05p06070 Brassica napus HOM05D002787 ORTHO05D003506 8.7e-13 77.4 92 51.1
Thecc.10G008400 Theobroma cacao HOM05D002787 ORTHO05D003506 1.1e-12 77.0 89 50.6
THA.LOC104811876 Tarenaya hassleriana HOM05D002787 ORTHO05D003506 1.5e-12 76.6 90 51.1
CARHR135520 Cardamine hirsuta HOM05D002787 ORTHO05D003506 1.9e-12 76.3 83 53.0
Peaxi162Scf00284g00136 Petunia axillaris HOM05D002787 ORTHO05D003506 1.9e-12 76.3 103 41.7
Gohir.A06G160000 Gossypium hirsutum HOM05D002787 ORTHO05D003506 2.5e-12 75.9 92 50.0
Prupe.2G258500 Prunus persica HOM05D002787 ORTHO05D003506 4.3e-12 75.1 88 53.4
ECA238G4654 Erigeron canadensis HOM05D002787 ORTHO05D003506 5.6e-12 74.7 86 48.8
Manes.07G136500 Manihot esculenta HOM05D002787 ORTHO05D003506 5.6e-12 74.7 90 51.1
COL.COLO4_25814 Corchorus olitorius HOM05D002787 ORTHO05D003506 7.4e-12 74.3 90 50.0
Duzib114G0720 Durio zibethinus HOM05D002787 ORTHO05D003506 9.6e-12 73.9 89 50.6
SalBow3G2057 Salvia bowleyana HOM05D002787 ORTHO05D003506 1.3e-11 73.6 85 45.9
Lsat_1_v5_gn_2_125840 Lactuca sativa HOM05D002787 ORTHO05D003506 1.6e-11 73.2 87 49.4
DCAR_011866 Daucus carota HOM05D002787 ORTHO05D003506 6.2e-11 71.2 68 57.4
Dinv10567 Davidia involucrata HOM05D002787 ORTHO05D003506 6.2e-11 71.2 79 49.4
Prupe.2G258700 Prunus persica HOM05D002787 ORTHO05D003506 6.2e-11 71.2 68 55.9
PSO349G0073 Papaver somniferum HOM05D002787 ORTHO05D003506 8.1e-11 70.9 89 48.3
Rhsim03G0149000 Rhododendron simsii HOM05D002787 ORTHO05D003506 8.1e-11 70.9 85 48.2
FAN10G1113 Fragaria x ananassa HOM05D002787 ORTHO05D003506 1.1e-10 70.5 67 56.7
Potri.010G182500 Populus trichocarpa HOM05D002787 ORTHO05D003506 1.4e-10 70.1 83 49.4
Atru.chr12.133 Acer truncatum HOM05D002787 ORTHO05D003506 1.8e-10 69.7 68 52.9
FAN01G2059 Fragaria x ananassa HOM05D002787 ORTHO05D003506 1.8e-10 69.7 83 50.6
PSO017G0967 Papaver somniferum HOM05D002787 ORTHO05D003506 1.8e-10 69.7 89 47.2
TAR369G0263 Trochodendron aralioides HOM05D002787 ORTHO05D003506 1.8e-10 69.7 137 36.5
Actinidia29736 Actinidia chinensis HOM05D002787 ORTHO05D003506 2.4e-10 69.3 83 48.2
FvH4_7g25420 Fragaria vesca HOM05D002787 ORTHO05D003506 2.4e-10 69.3 156 34.0
FAN06G2818 Fragaria x ananassa HOM05D002787 ORTHO05D003506 2.4e-10 69.3 67 56.7
FAN06G5128 Fragaria x ananassa HOM05D002787 ORTHO05D003506 2.4e-10 69.3 67 56.7
Gohir.D10G252100 Gossypium hirsutum HOM05D002787 ORTHO05D003506 2.4e-10 69.3 89 44.9
Gohir.D10G252600 Gossypium hirsutum HOM05D002787 ORTHO05D003506 2.4e-10 69.3 89 44.9
Gorai.011G292900 Gossypium raimondii HOM05D002787 ORTHO05D003506 2.4e-10 69.3 84 47.6
Sabra08G0055400 Salix brachista HOM05D002787 ORTHO05D003506 3.1e-10 68.9 88 46.6
vmacro06914 Vaccinium macrocarpon HOM05D002787 ORTHO05D003506 3.1e-10 68.9 112 40.2
Ciclev10032052m.g Citrus clementina HOM05D002787 ORTHO05D003506 4.0e-10 68.6 83 45.8
Cc02_g05810 Coffea canephora HOM05D002787 ORTHO05D003506 4.0e-10 68.6 91 45.1
Duzib114G0231 Durio zibethinus HOM05D002787 ORTHO05D003506 4.0e-10 68.6 85 48.2
Migut.F00615 Erythranthe guttata HOM05D002787 ORTHO05D003506 4.0e-10 68.6 84 45.2
CANSAT56G2981 Cannabis sativa HOM05D002787 ORTHO05D003506 5.3e-10 68.2 68 51.5
RcHm_v2.0_Chr1g0371391 Rosa chinensis HOM05D002787 ORTHO05D003506 5.3e-10 68.2 88 48.9
Sed0006213 Sechium edule HOM05D002787 ORTHO05D003506 5.3e-10 68.2 86 45.3
FAN03G0925 Fragaria x ananassa HOM05D002787 ORTHO05D003506 6.9e-10 67.8 67 55.2
Sabra10G0139900 Salix brachista HOM05D002787 ORTHO05D003506 6.9e-10 67.8 88 48.9
Aa31sc131G20 Aethionema arabicum HOM05D003849 ORTHO05D002482 9.0e-10 67.4 34 97.1
Potri.008G074800 Populus trichocarpa HOM05D002787 ORTHO05D003506 9.0e-10 67.4 73 47.9
AUR62022966 Chenopodium quinoa HOM05D002787 ORTHO05D003506 1.2e-09 67.0 73 52.1
LjContig00357g0017303 Lotus japonicus HOM05D002787 ORTHO05D003506 1.2e-09 67.0 88 43.2
TAR369G0379 Trochodendron aralioides HOM05D002787 ORTHO05D003506 1.2e-09 67.0 87 46.0
Gohir.D10G252500 Gossypium hirsutum HOM05D002787 ORTHO05D003506 1.5e-09 66.6 89 43.8
Lj8A59T33 Lonicera japonica HOM05D002787 ORTHO05D003506 1.5e-09 66.6 73 47.9
Lju41A22G19 Lonicera japonica HOM05D002787 ORTHO05D003506 1.5e-09 66.6 73 47.9
TWI09G0137 Tripterygium wilfordii HOM05D002787 ORTHO05D003506 1.5e-09 66.6 68 51.5
EL10Ac2g04305 Beta vulgaris HOM05D002787 ORTHO05D003506 2.0e-09 66.2 73 52.1
Cfa001244 Carpinus fangiana HOM05D002787 ORTHO05D003506 2.0e-09 66.2 96 39.6
Gohir.A10G240300 Gossypium hirsutum HOM05D002787 ORTHO05D003506 2.0e-09 66.2 89 43.8
HanXRQChr07g0203541 Helianthus annuus HOM05D002787 ORTHO05D003506 2.0e-09 66.2 85 47.1
Medtr5g083720 Medicago truncatula HOM05D002787 ORTHO05D003506 2.6e-09 65.9 83 44.6
Nitab4.5_0001291g0040 Nicotiana tabacum HOM05D002787 ORTHO05D003506 2.6e-09 65.9 79 45.6
QL08p064105 Quercus lobata HOM05D002787 ORTHO05D003506 3.4e-09 65.5 83 47.0
QL08p064143 Quercus lobata HOM05D002787 ORTHO05D003506 3.4e-09 65.5 83 47.0
SGA_v2.0_scaffold44G16649 Striga asiatica HOM05D002787 ORTHO05D003506 3.4e-09 65.5 68 51.5
CSS0041964 Camellia sinensis var. sinensis HOM05D002787 ORTHO05D003506 4.5e-09 65.1 85 45.9
CsaV3_5G010670 Cucumis sativus L. HOM05D002787 ORTHO05D003506 4.5e-09 65.1 88 45.5
Oeu008080.1 Olea europaea HOM05D002787 ORTHO05D003506 4.5e-09 65.1 73 49.3
Prupe.2G258400 Prunus persica HOM05D002787 ORTHO05D003506 4.5e-09 65.1 68 51.5
Ah.10g036070 Amaranthus hybridus HOM05D002787 ORTHO05D003506 5.8e-09 64.7 68 51.5
CAN.G2493.1 Capsicum annuum HOM05D002787 ORTHO05D003506 5.8e-09 64.7 79 45.6
CAN.G256.5 Capsicum annuum HOM05D002787 ORTHO05D003506 5.8e-09 64.7 79 45.6
CAN.G256.6 Capsicum annuum HOM05D002787 ORTHO05D003506 5.8e-09 64.7 79 45.6
Cfa001243 Carpinus fangiana HOM05D002787 ORTHO05D003506 5.8e-09 64.7 83 48.2
Medtr5g083730 Medicago truncatula HOM05D002787 ORTHO05D003506 5.8e-09 64.7 83 47.0
PSO611G0002 Papaver somniferum HOM05D002787 ORTHO05D003506 5.8e-09 64.7 125 34.4
Thecc.04G020600 Theobroma cacao HOM05D002787 ORTHO05D003506 5.8e-09 64.7 68 51.5
Actinidia33891 Actinidia chinensis HOM05D002787 ORTHO05D003506 7.6e-09 64.3 73 49.3
CiPaw.01G303100 Carya illinoinensis HOM05D002787 ORTHO05D003506 7.6e-09 64.3 85 45.9
ClCG07G004750 Citrullus lanatus HOM05D002787 ORTHO05D003506 7.6e-09 64.3 91 46.2
MD01G1160800 Malus domestica HOM05D002787 ORTHO05D003506 7.6e-09 64.3 90 43.3
Nitab4.5_0002854g0060 Nicotiana tabacum HOM05D002787 ORTHO05D003506 7.6e-09 64.3 79 44.3
GSVIVG01032729001 Vitis vinifera HOM05D002787 ORTHO05D003506 7.6e-09 64.3 83 48.2
Atru.chr12.132 Acer truncatum HOM05D002787 ORTHO05D003506 9.9e-09 63.9 83 47.0
QL08p064095 Quercus lobata HOM05D002787 ORTHO05D003506 9.9e-09 63.9 83 48.2
QL08p064114 Quercus lobata HOM05D002787 ORTHO05D003506 9.9e-09 63.9 83 48.2
QL08p064135 Quercus lobata HOM05D002787 ORTHO05D003506 9.9e-09 63.9 83 48.2
QL08p064169 Quercus lobata HOM05D002787 ORTHO05D003506 9.9e-09 63.9 83 45.8
Cpa.g.sc19.108 Carica papaya HOM05D002787 ORTHO05D003506 1.3e-08 63.5 88 43.2
AUR62012324 Chenopodium quinoa HOM05D002787 ORTHO05D003506 1.7e-08 63.2 73 49.3
Ca_06011_v3 Cicer arietinum L. HOM05D002787 ORTHO05D003506 1.7e-08 63.2 78 48.7
Glyma.02G260600 Glycine max HOM05D002787 ORTHO05D003506 1.7e-08 63.2 97 43.3
Lalb_Chr04g0250341 Lupinus albus HOM05D002787 ORTHO05D003506 2.2e-08 62.8 85 44.7
TPR.G20190 Trifolium pratense HOM05D002787 ORTHO05D003506 2.2e-08 62.8 80 47.5
Aqoxy4G02183 Aquilegia oxysepala HOM05D002787 ORTHO05D003506 2.9e-08 62.4 95 41.1
CSS0023990 Camellia sinensis var. sinensis HOM05D002787 ORTHO05D003506 2.9e-08 62.4 91 45.1
Haze_17308 Corylus avellana HOM05D002787 ORTHO05D003506 2.9e-08 62.4 68 44.1
Haze_17309 Corylus avellana HOM05D002787 ORTHO05D003506 2.9e-08 62.4 83 44.6
Nn2g11039 Nelumbo nucifera HOM05D002787 ORTHO05D003506 2.9e-08 62.4 86 46.5
Solyc06g050720.3 Solanum lycopersicum HOM05D002787 ORTHO05D003506 2.9e-08 62.4 79 43.0
PGSC0003DMG400017899 Solanum tuberosum HOM05D002787 ORTHO05D003506 2.9e-08 62.4 79 43.0
MELO3C020101.2 Cucumis melo HOM05D002787 ORTHO05D003506 3.8e-08 62.0 92 41.3
Eucgr.J00160 Eucalyptus grandis HOM05D002787 ORTHO05D003506 3.8e-08 62.0 92 41.3
PSO017G1323 Papaver somniferum HOM05D002787 ORTHO05D003506 3.8e-08 62.0 134 32.8
PGR044G1828 Punica granatum HOM05D002787 ORTHO05D003506 3.8e-08 62.0 97 43.3
MSTRG.27293 Avicennia marina HOM05D002787 ORTHO05D003506 6.4e-08 61.2 91 40.7
CDE07G1018 Ceratophyllum demersum HOM05D002787 ORTHO05D003506 6.4e-08 61.2 92 43.5
PSO017G6199 Papaver somniferum HOM05D002787 ORTHO05D003506 6.4e-08 61.2 68 48.5
PGR044G1940 Punica granatum HOM05D002787 ORTHO05D003506 6.4e-08 61.2 97 43.3
Sopen06g016280 Solanum pennellii HOM05D002787 ORTHO05D003506 6.4e-08 61.2 79 41.8
Gohir.D10G252700 Gossypium hirsutum HOM05D002787 ORTHO05D003506 8.4e-08 60.8 68 45.6
PSO384G4277 Papaver somniferum HOM05D002787 ORTHO05D003506 8.4e-08 60.8 82 43.9
Haze_17314 Corylus avellana HOM05D002787 ORTHO05D003506 1.1e-07 60.5 83 44.6
PSO304G0015 Papaver somniferum HOM05D002787 ORTHO05D003506 1.1e-07 60.5 82 43.9
Phvul.008G219500 Phaseolus vulgaris HOM05D002787 ORTHO05D003506 1.1e-07 60.5 85 41.2
Psat2g029160 Pisum sativum HOM05D002787 ORTHO05D003506 1.1e-07 60.5 84 44.0
Hund15864 Selenicereus undatus HOM05D002787 ORTHO05D003506 1.1e-07 60.5 89 40.4
Hund13521 Selenicereus undatus HOM05D002787 ORTHO05D003506 1.4e-07 60.1 99 40.4
SHI28867 Sapria himalayana HOM05D002787 ORTHO05D003506 1.9e-07 59.7 75 41.3
Sc10g0002780 Simmondsia chinensis HOM05D002787 ORTHO05D003506 1.9e-07 59.7 73 46.6
Gohir.D10G252200 Gossypium hirsutum HOM05D002787 ORTHO05D003506 3.2e-07 58.9 84 42.9
Gohir.D10G252540 Gossypium hirsutum HOM05D002787 ORTHO05D003506 3.2e-07 58.9 68 47.1
Gorai.011G293000 Gossypium raimondii HOM05D002787 ORTHO05D003506 3.2e-07 58.9 68 45.6
HanXRQChr09g0252181 Helianthus annuus HOM05D002787 ORTHO05D003506 3.2e-07 58.9 68 47.1
HanXRQChr11g0350501 Helianthus annuus HOM05D002787 ORTHO05D003506 3.2e-07 58.9 90 43.3
PSO832G4151 Papaver somniferum HOM05D002787 ORTHO05D003506 4.2e-07 58.5 83 41.0
VMungo0647G0953 Vigna mungo HOM05D002787 ORTHO05D003506 4.2e-07 58.5 92 42.4
CSS0025620 Camellia sinensis var. sinensis HOM05D002787 ORTHO05D003506 5.5e-07 58.2 91 41.8
Manes.10G007000 Manihot esculenta HOM05D002787 ORTHO05D003506 5.5e-07 58.2 68 48.5
QL08p064185 Quercus lobata HOM05D002787 ORTHO05D003506 5.5e-07 58.2 83 41.0
Gorai.N022700 Gossypium raimondii HOM05D002787 ORTHO05D003506 7.1e-07 57.8 62 48.4
PGR044G0693 Punica granatum HOM05D002787 ORTHO05D003506 7.1e-07 57.8 97 42.3
unitig_88.g27822 Utricularia gibba HOM05D002787 ORTHO05D003506 7.1e-07 57.8 87 40.2
MBI15_g03643_MAGBIO Magnolia biondii HOM05D002787 ORTHO05D003506 9.3e-07 57.4 68 45.6
ATR0594G145 Amborella trichopoda HOM05D002787 ORTHO05D003506 1.2e-06 57.0 89 42.7
Gohir.A10G240400 Gossypium hirsutum HOM05D002787 ORTHO05D003506 1.2e-06 57.0 68 44.1
MD07G1228600 Malus domestica HOM05D002787 ORTHO05D003506 1.2e-06 57.0 83 47.0
Oeu008079.1 Olea europaea HOM05D002787 ORTHO05D003506 1.2e-06 57.0 73 42.5
arahy.Tifrunner.gnm1.ann1.2Y6RK6 Arachis hypogaea HOM05D002787 ORTHO05D003506 1.6e-06 56.6 84 41.7
arahy.Tifrunner.gnm1.ann1.RB5H3E Arachis hypogaea HOM05D002787 ORTHO05D003506 1.6e-06 56.6 84 41.7
Lsat_1_v5_gn_9_58560 Lactuca sativa HOM05D002787 ORTHO05D003506 1.6e-06 56.6 67 46.3
EL10Ac2g04917 Beta vulgaris HOM05D002787 ORTHO05D003506 2.1e-06 56.2 89 43.8
Lsat_1_v5_gn_9_58540 Lactuca sativa HOM05D002787 ORTHO05D003506 2.1e-06 56.2 67 47.8
HanXRQChr15g0493851 Helianthus annuus HOM05D002787 ORTHO05D003506 2.7e-06 55.8 68 44.1
Zm00001eb123360 Zea mays HOM05D002787 ORTHO05D003506 3.5e-06 55.5 68 42.6
Thecc.04G167100 Theobroma cacao HOM05D002787 ORTHO05D003506 4.6e-06 55.1 80 42.5


User provided reference genes

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