Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G6850 Aethionema arabicum HOM05D005380 ORTHO05D006601 0.0e+00 1882.1 977 100.0
Carub.0001s2236 Capsella rubella HOM05D005380 ORTHO05D006601 0.0e+00 1629.0 1000 85.1
AL1G36400 Arabidopsis lyrata HOM05D005380 ORTHO05D006601 0.0e+00 1614.7 1001 84.4
Sp1g20340 Schrenkiella parvula HOM05D005380 ORTHO05D006601 0.0e+00 1613.2 1000 85.3
CARHR023210 Cardamine hirsuta HOM05D005380 ORTHO05D006601 0.0e+00 1603.2 1001 84.0
BcaC05g26192 Brassica carinata HOM05D005380 ORTHO05D006601 0.0e+00 1600.9 1003 83.4
C05p21950 Brassica napus HOM05D005380 ORTHO05D006601 0.0e+00 1597.8 1003 83.3
A09p41900 Brassica napus HOM05D005380 ORTHO05D006601 0.0e+00 1597.0 1004 83.5
BraA09t39678Z Brassica rapa HOM05D005380 ORTHO05D006601 0.0e+00 1595.9 1004 83.3
BolC5t30892H Brassica oleracea HOM05D003679 ORTHO05D004265 0.0e+00 1589.7 1003 83.1
AT1G22860 Arabidopsis thaliana HOM05D005380 ORTHO05D006601 0.0e+00 1588.9 1001 83.2
BcaB07g32281 Brassica carinata HOM05D005380 ORTHO05D006601 0.0e+00 1570.4 1003 82.9
THA.LOC104810347 Tarenaya hassleriana HOM05D005380 ORTHO05D006601 0.0e+00 1451.0 1002 76.1
Thhalv10006692m.g Eutrema salsugineum HOM05D005380 ORTHO05D006601 0.0e+00 1401.3 825 87.2
BcaNung06594 Brassica carinata HOM05D005380 ORTHO05D006601 0.0e+00 1322.4 1005 73.6
Atru.chr10.630_Atru.chr10.631 Acer truncatum HOM05D005380 ORTHO05D006601 0.0e+00 1204.9 1011 64.1
Atru.chr10.626 Acer truncatum HOM05D005380 ORTHO05D006601 0.0e+00 1201.0 1011 63.8
GSVIVG01013627001 Vitis vinifera HOM05D005380 ORTHO05D006601 0.0e+00 1181.8 1025 61.6
Ciclev10014143m.g Citrus clementina HOM05D005380 ORTHO05D006601 0.0e+00 1174.1 1021 62.8
Potri.003G148700 Populus trichocarpa HOM05D005380 ORTHO05D006601 0.0e+00 1171.8 1021 61.5
Potri.001G081900 Populus trichocarpa HOM05D005380 ORTHO05D006601 0.0e+00 1168.3 1021 61.5
Dinv01434 Davidia involucrata HOM05D005380 ORTHO05D006601 0.0e+00 1165.2 1033 60.8
QL11p017903 Quercus lobata HOM05D005380 ORTHO05D006601 0.0e+00 1164.8 1028 60.2
TWI09G1549 Tripterygium wilfordii HOM05D005380 ORTHO05D006601 0.0e+00 1154.0 1027 60.8
Sabra03G0108200 Salix brachista HOM05D005380 ORTHO05D006601 0.0e+00 1152.5 1028 60.5
Cfa000719 Carpinus fangiana HOM05D005380 ORTHO05D006601 0.0e+00 1149.0 1034 59.9
FAN21G3255 Fragaria x ananassa HOM05D005380 ORTHO05D006601 0.0e+00 1148.3 1002 61.0
MD10G1238900 Malus domestica HOM05D005380 ORTHO05D006601 0.0e+00 1146.3 1021 60.2
Gohir.D10G048301 Gossypium hirsutum HOM05D005380 ORTHO05D006601 0.0e+00 1146.0 1020 61.1
Gorai.011G051400 Gossypium raimondii HOM05D005380 ORTHO05D006601 0.0e+00 1144.8 1000 61.9
Duzib192G0856 Durio zibethinus HOM05D005380 ORTHO05D006601 0.0e+00 1144.0 1020 61.3
FAN16G1170 Fragaria x ananassa HOM05D005380 ORTHO05D006601 0.0e+00 1143.6 1001 60.6
Thecc.06G135400 Theobroma cacao HOM05D005380 ORTHO05D006601 0.0e+00 1140.2 1020 61.0
RcHm_v2.0_Chr5g0019211 Rosa chinensis HOM05D005380 ORTHO05D006601 0.0e+00 1138.6 1024 60.0
FAN25G3771 Fragaria x ananassa HOM05D005380 ORTHO05D006601 0.0e+00 1136.7 1005 60.1
Hma1.2p1_1380F.1_g279310 Hydrangea macrophylla HOM05D005380 ORTHO05D006601 0.0e+00 1130.5 1024 59.4
PGR083G1975 Punica granatum HOM05D005380 ORTHO05D006601 0.0e+00 1116.7 1012 60.0
Manes.11G052180 Manihot esculenta HOM05D005380 ORTHO05D006601 0.0e+00 1108.6 986 60.2
Eucgr.E02010 Eucalyptus grandis HOM05D005380 ORTHO05D006601 0.0e+00 1104.0 1038 58.3
arahy.Tifrunner.gnm1.ann1.GT0B0E Arachis hypogaea HOM05D005380 ORTHO05D006601 0.0e+00 1102.8 1028 59.6
MD05G1259300 Malus domestica HOM05D005380 ORTHO05D006601 0.0e+00 1102.8 1074 56.5
arahy.Tifrunner.gnm1.ann1.UEF6CF Arachis hypogaea HOM05D005380 ORTHO05D006601 0.0e+00 1102.4 1026 59.7
CANSAT80G1059 Cannabis sativa HOM05D005380 ORTHO05D006601 0.0e+00 1093.2 1003 58.2
Lalb_Chr07g0194321 Lupinus albus HOM05D005380 ORTHO05D006601 0.0e+00 1090.9 1017 59.2
CSS0002209 Camellia sinensis var. sinensis HOM05D005380 ORTHO05D006601 0.0e+00 1089.7 1015 58.9
Lj3g0005152 Lotus japonicus HOM05D005380 ORTHO05D006601 0.0e+00 1088.9 1020 58.9
Ca_23214_v3 Cicer arietinum L. HOM05D005380 ORTHO05D006601 0.0e+00 1085.5 1026 58.1
Medtr8g012560 Medicago truncatula HOM05D005380 ORTHO05D006601 0.0e+00 1081.6 1012 58.5
VMungo0331G1684 Vigna mungo HOM05D005380 ORTHO05D006601 0.0e+00 1079.7 1022 58.6
Glyma.03G103900 Glycine max HOM05D005380 ORTHO05D006601 3.3e-311 1071.6 1014 58.4
Glyma.07G119900 Glycine max HOM05D005380 ORTHO05D006601 9.5e-309 1063.5 1020 57.8
MBI10_g16336_MAGBIO Magnolia biondii HOM05D005380 ORTHO05D006601 5.8e-306 1054.3 1011 57.4
FvH4_3g11790 Fragaria vesca HOM05D005380 ORTHO05D006601 2.2e-305 1052.4 836 65.0
Prupe.4G105500 Prunus persica HOM05D005380 ORTHO05D006601 2.4e-304 1048.9 846 64.4
Hund06739 Selenicereus undatus HOM05D005380 ORTHO05D006601 2.4e-304 1048.9 1024 55.4
HanXRQChr14g0457361 Helianthus annuus HOM05D005380 ORTHO05D006601 6.0e-303 1044.3 1016 56.3
MELO3C021785.2 Cucumis melo HOM05D005380 ORTHO05D006601 3.3e-301 1038.5 1031 54.3
CsaV3_1G046710 Cucumis sativus L. HOM05D005380 ORTHO05D006601 3.3e-301 1038.5 1032 54.0
Haze_06032 Corylus avellana HOM05D005380 ORTHO05D006601 1.6e-300 1036.2 1084 54.0
Sc10g0009350 Simmondsia chinensis HOM05D005380 ORTHO05D006601 3.6e-300 1035.0 1028 55.1
CiPaw.10G065000 Carya illinoinensis HOM05D005380 ORTHO05D006601 1.1e-299 1033.5 789 67.7
Sed0014613 Sechium edule HOM05D005380 ORTHO05D006601 1.1e-299 1033.5 1026 54.5
TPR.G31565 Trifolium pratense HOM05D005380 ORTHO05D006601 3.1e-299 1031.9 860 63.3
CSS0007558 Camellia sinensis var. sinensis HOM05D005380 ORTHO05D006601 5.2e-299 1031.2 1015 56.7
PSO357G0674 Papaver somniferum HOM05D005380 ORTHO05D006601 5.2e-299 1031.2 1030 53.9
Lsat_1_v5_gn_4_38401 Lactuca sativa HOM05D005380 ORTHO05D006601 9.9e-298 1026.9 1021 54.1
Cc09_g06540 Coffea canephora HOM05D005380 ORTHO05D006601 1.9e-296 1022.7 993 56.0
PSO170G0871 Papaver somniferum HOM05D005380 ORTHO05D006601 7.8e-295 1017.3 1031 53.6
vmacro04057 Vaccinium macrocarpon HOM05D005380 ORTHO05D006601 9.6e-293 1010.4 1034 55.4
ECA234G0325 Erigeron canadensis HOM05D005380 ORTHO05D006601 1.6e-292 1009.6 1006 54.4
DCAR_003768 Daucus carota HOM05D005380 ORTHO05D006601 4.4e-290 1001.5 1013 54.3
EL10Ac8g19470 Beta vulgaris HOM05D005380 ORTHO05D006601 9.9e-290 1000.3 1015 54.0
COL.COLO4_30926 Corchorus olitorius HOM05D005380 ORTHO05D006601 2.2e-289 999.2 1021 55.7
Nitab4.5_0002174g0030 Nicotiana tabacum HOM05D005380 ORTHO05D006601 9.3e-288 993.8 987 54.9
Sopen05g010460 Solanum pennellii HOM05D005380 ORTHO05D006601 4.6e-287 991.5 983 55.6
Nitab4.5_0005179g0030 Nicotiana tabacum HOM05D005380 ORTHO05D006601 1.7e-286 989.6 1007 54.3
CAN.G890.49 Capsicum annuum HOM05D005380 ORTHO05D006601 4.3e-285 984.9 1004 54.4
Aqoxy5G03588 Aquilegia oxysepala HOM05D005380 ORTHO05D006601 9.6e-285 983.8 1040 54.0
Ah.14g085840 Amaranthus hybridus HOM05D005380 ORTHO05D006601 8.1e-284 980.7 1039 52.6
Rhsim13G0198600 Rhododendron simsii HOM05D005380 ORTHO05D006601 6.4e-281 971.1 993 55.4
ClCG01G008980 Citrullus lanatus HOM05D005380 ORTHO05D006601 1.8e-278 963.0 1055 50.9
Migut.M01950 Erythranthe guttata HOM05D005380 ORTHO05D006601 1.1e-277 960.3 1011 52.8
Oeu000486.1 Olea europaea HOM05D005380 ORTHO05D006601 2.5e-277 959.1 1015 52.5
ECA247G3537 Erigeron canadensis HOM05D005380 ORTHO05D006601 7.4e-277 957.6 901 56.8
HPP92_023728 Vanilla planifolia HOM05D005380 ORTHO05D006601 5.3e-275 951.4 1031 52.1
CDE02G1822 Ceratophyllum demersum HOM05D005380 ORTHO05D006601 9.0e-275 950.7 1009 51.5
ATR0743G092 Amborella trichopoda HOM05D005380 ORTHO05D006601 2.0e-274 949.5 1023 51.3
Phvul.010G053600 Phaseolus vulgaris HOM05D005380 ORTHO05D006601 7.6e-274 947.6 936 56.8
Peaxi162Scf00128g01143 Petunia axillaris HOM05D005380 ORTHO05D006601 4.2e-272 941.8 834 59.6
MSTRG.12176 Avicennia marina HOM05D005380 ORTHO05D006601 6.3e-268 927.9 1011 51.2
SGA_v2.0_scaffold223G42899 Striga asiatica HOM05D005380 ORTHO05D006601 1.7e-265 919.8 1006 51.1
AUR62042012 Chenopodium quinoa HOM05D005380 ORTHO05D006601 6.5e-265 917.9 1007 50.7
Manes.16G057200 Manihot esculenta HOM05D005380 ORTHO05D006601 2.8e-260 902.5 859 56.9
Zm00001eb267510 Zea mays HOM05D005380 ORTHO05D006601 6.1e-255 884.8 1008 49.4
Os05g0104100 Oryza sativa ssp. japonica HOM05D005380 ORTHO05D006601 6.3e-252 874.8 1003 48.6
Duzib235G1486 Durio zibethinus HOM05D005380 ORTHO05D006601 5.5e-248 861.7 1027 50.5
Psat4g204440 Pisum sativum HOM05D005380 ORTHO05D006601 1.8e-246 856.7 1028 50.1
TAR365G0677 Trochodendron aralioides HOM05D005380 ORTHO05D006601 1.7e-244 850.1 669 66.8
AUR62043348 Chenopodium quinoa HOM05D005380 ORTHO05D006601 3.7e-244 849.0 1013 48.3
Nn1g01426 Nelumbo nucifera HOM05D005380 ORTHO05D006601 1.5e-237 827.0 653 65.5
SEGI_33229 Sequoiadendron giganteum HOM05D005380 ORTHO05D006601 2.9e-204 716.5 868 47.7
SalBow8G2602 Salvia bowleyana HOM05D005380 ORTHO05D006601 1.2e-165 588.2 658 49.5
SalBow8G4959 Salvia bowleyana HOM05D005380 ORTHO05D006601 1.2e-165 588.2 658 49.5
unitig_747.g21990 Utricularia gibba HOM05D005380 ORTHO05D006601 2.0e-165 587.4 681 49.9
Pp3c6_25240 Physcomitrium patens HOM05D005380 ORTHO05D006601 3.0e-153 547.0 983 35.7
Mapoly0029s0138 Marchantia polymorpha HOM05D005380 ORTHO05D006601 1.5e-149 534.6 997 36.3
Lj1A1141T72 Lonicera japonica HOM05D005380 ORTHO05D006601 5.3e-142 509.6 538 51.9
CDE04G2683 Ceratophyllum demersum HOM05D005380 ORTHO05D006601 3.6e-138 496.9 613 45.8
Lj1A1141T73 Lonicera japonica HOM05D005380 ORTHO05D006601 9.7e-136 488.8 435 59.5
Actinidia12893 Actinidia chinensis HOM05D005380 ORTHO05D006601 2.2e-135 487.6 467 57.6
Solyc05g015210.4 Solanum lycopersicum HOM05D005380 ORTHO05D006601 3.7e-135 486.9 421 61.3
AagrBONN_evm.TU.Sc2ySwM_362.853 Anthoceros agrestis HOM05D005380 ORTHO05D006601 6.5e-124 449.5 984 32.6
CSS0038991 Camellia sinensis var. sinensis HOM05D005380 ORTHO05D006601 1.7e-103 381.7 252 74.6
SMO146G0159 Selaginella moellendorffii HOM05D005380 ORTHO05D006601 1.8e-102 378.3 811 31.8
Cpa.g.sc21.90 Carica papaya HOM05D005380 ORTHO05D006601 4.1e-102 377.1 322 64.0
QL05p013204 Quercus lobata HOM05D005380 ORTHO05D006601 1.4e-94 352.1 275 63.6
CBR_g10913 Chara braunii HOM05D005380 ORTHO05D006601 1.4e-78 298.9 1075 25.5
TWI53G1262 Tripterygium wilfordii HOM05D005380 ORTHO05D006601 1.4e-62 245.7 156 76.9
Hma1.2p1_0537F.1_g174360 Hydrangea macrophylla HOM05D005380 ORTHO05D006601 7.9e-53 213.4 347 41.2
SHI20665 Sapria himalayana HOM05D005380 ORTHO05D006601 1.6e-45 189.1 153 60.8
PRCOL_00002861 Prasinoderma coloniale HOM05D005380 ORTHO05D006601 1.8e-44 185.7 899 25.6
arahy.Tifrunner.gnm1.ann1.BZI3ML Arachis hypogaea HOM05D005380 ORTHO05D006601 4.2e-38 164.5 155 60.0
QL10p043084 Quercus lobata HOM05D005380 ORTHO05D006601 1.1e-35 156.4 122 61.5
SEGI_30953 Sequoiadendron giganteum HOM05D005380 ORTHO05D006601 2.5e-35 155.2 386 31.6
Cpa.g.sc21.93 Carica papaya HOM05D005380 ORTHO05D006601 1.3e-34 152.9 103 68.9
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 2.4e-33 148.7 114 62.3
Cpa.g.sc21.91 Carica papaya HOM05D005380 ORTHO05D006601 6.9e-33 147.1 123 56.9
QL09p040316 Quercus lobata HOM05D005380 ORTHO05D006601 8.5e-31 140.2 114 58.8
Cpa.g.sc21.92 Carica papaya HOM05D005380 ORTHO05D006601 9.4e-30 136.7 72 84.7
QL05p013201 Quercus lobata HOM05D005380 ORTHO05D006601 3.6e-29 134.8 118 58.5
unitig_747.g21989 Utricularia gibba HOM05D005380 ORTHO05D006601 4.3e-27 127.9 288 34.4
AUR62014043 Chenopodium quinoa HOM05D001015 ORTHO05D000881 5.7e-27 127.5 187 41.2
CDE04G3530 Ceratophyllum demersum HOM05D005380 ORTHO05D006601 1.7e-26 125.9 74 79.7
Actinidia22453 Actinidia chinensis HOM05D005380 ORTHO05D006601 1.4e-22 112.8 106 57.5
Actinidia22434 Actinidia chinensis HOM05D002462 ORTHO05D002893 4.2e-22 111.3 116 55.2
QL09p040321 Quercus lobata HOM05D005380 ORTHO05D006601 1.1e-17 96.7 59 81.4
Actinidia22440 Actinidia chinensis HOM05D005380 ORTHO05D006601 8.5e-15 87.0 71 64.8
VMungo0647G1097 Vigna mungo HOM05D005380 ORTHO05D006601 4.2e-14 84.7 88 53.4
Cre17.g709400 Chlamydomonas reinhardtii HOM05D005380 ORTHO05D006601 1.6e-13 82.8 119 37.8
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 1.1e-11 76.6 912 20.3
Gohir.A02G165200 Gossypium hirsutum HOM05D004035 ORTHO05D004631 9.7e-11 73.6 655 20.6
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 1.7e-10 72.8 36 88.9
C01p00770 Brassica napus HOM05D000249 ORTHO05D000206 1.7e-10 72.8 95 50.5
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 2.8e-10 72.0 44 72.7
AUR62037445 Chenopodium quinoa HOM05D005380 ORTHO05D001837 4.8e-10 71.2 266 28.6
LjContig00448g0016984 Lotus japonicus HOM05D004035 ORTHO05D004631 4.8e-10 71.2 665 21.7
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 1.1e-09 70.1 656 21.2
ATR0743G236 Amborella trichopoda HOM05D004035 ORTHO05D004631 1.4e-09 69.7 880 19.3
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 5.3e-09 67.8 870 19.9
Lj1g0016074 Lotus japonicus HOM05D004035 ORTHO05D004631 3.5e-08 65.1 665 21.5
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 4.5e-08 64.7 880 17.6
Os03g0715500 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 5.9e-08 64.3 662 21.3
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 1.0e-07 63.5 439 21.9
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 1.0e-07 63.5 905 19.8
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 1.0e-07 63.5 673 21.0
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 1.0e-07 63.5 694 20.6
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 1.7e-07 62.8 657 21.3
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 2.2e-07 62.4 350 23.7
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 2.9e-07 62.0 347 23.1
Sp7g34290 Schrenkiella parvula HOM05D004035 ORTHO05D004631 5.0e-07 61.2 902 18.5
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 1.9e-06 59.3 882 17.5
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 1.9e-06 59.3 892 19.2
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 1.9e-06 59.3 656 20.4
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 2.5e-06 58.9 350 23.1
AUR62007565 Chenopodium quinoa HOM05D004035 ORTHO05D004631 7.2e-06 57.4 664 20.6
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 9.4e-06 57.0 678 21.1


User provided reference genes

Program Settings