Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G15320 Aethionema arabicum HOM05D001937 ORTHO05D003828 2.3e-282 974.9 509 100.0
Aa31LG2G13230 Aethionema arabicum HOM05D001937 ORTHO05D003828 2.8e-126 456.4 1334 32.0
Carub.0001s3108 Capsella rubella HOM05D001937 ORTHO05D003828 2.6e-124 449.9 1331 31.3
Sp1g28210 Schrenkiella parvula HOM05D001937 ORTHO05D003828 1.5e-116 424.1 1323 30.5
AL1G47030 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 4.4e-116 422.5 1331 30.5
AT1G32750 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 2.2e-115 420.2 1332 30.4
Thhalv10006532m.g Eutrema salsugineum HOM05D001937 ORTHO05D003828 8.4e-115 418.3 1333 30.4
BcaB04g17964 Brassica carinata HOM05D001937 ORTHO05D003828 3.2e-114 416.4 1326 29.9
BolC8t47960H Brassica oleracea HOM05D001937 ORTHO05D003828 3.5e-113 412.9 1316 30.1
BcaC07g37602 Brassica carinata HOM05D001937 ORTHO05D003828 1.7e-112 410.6 1322 30.0
A08p09140 Brassica napus HOM05D001937 ORTHO05D003828 1.7e-112 410.6 1322 30.0
BraA08t32916Z Brassica rapa HOM05D001937 ORTHO05D003828 1.7e-112 410.6 1322 30.0
CARHR032130 Cardamine hirsuta HOM05D001937 ORTHO05D003828 9.9e-108 394.8 1337 30.0
THA.LOC104811101 Tarenaya hassleriana HOM05D001937 ORTHO05D003828 5.6e-103 379.0 1330 28.6
AT3G19040 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 4.0e-101 372.9 1288 28.9
BcaB04g20722 Brassica carinata HOM05D001937 ORTHO05D003828 2.0e-100 370.5 222 82.4
BcaC09g48870 Brassica carinata HOM05D001937 ORTHO05D003828 3.4e-100 369.8 222 82.4
C01p44990 Brassica napus HOM05D001937 ORTHO05D003828 3.4e-100 369.8 222 82.4
AL3G32430 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 1.3e-99 367.9 1283 28.8
CARHR094480 Cardamine hirsuta HOM05D001937 ORTHO05D003828 1.3e-99 367.9 222 82.4
BolC1t04467H Brassica oleracea HOM05D001937 ORTHO05D003828 2.2e-99 367.1 222 82.0
BraA01t03625Z Brassica rapa HOM05D001937 ORTHO05D003828 6.4e-99 365.5 222 81.5
A01p35430 Brassica napus HOM05D001937 ORTHO05D003828 1.0e-96 358.2 1219 29.6
Atru.chr3.3791 Acer truncatum HOM05D001937 ORTHO05D003828 4.9e-91 339.3 224 75.9
Ciclev10004125m.g Citrus clementina HOM05D001937 ORTHO05D003828 1.2e-89 334.7 224 73.7
Potri.007G113300 Populus trichocarpa HOM05D001937 ORTHO05D003828 2.7e-89 333.6 222 71.2
Gorai.011G137400 Gossypium raimondii HOM05D001937 ORTHO05D003828 1.5e-87 327.8 223 70.9
Gohir.A10G142200 Gossypium hirsutum HOM05D001937 ORTHO05D003828 2.5e-87 327.0 223 70.9
Potri.017G047600 Populus trichocarpa HOM05D001937 ORTHO05D003828 2.5e-87 327.0 222 71.2
Sabra17G0032100 Salix brachista HOM05D001937 ORTHO05D003828 4.3e-87 326.2 225 70.7
Manes.07G036600 Manihot esculenta HOM05D001937 ORTHO05D003828 5.7e-87 325.9 222 72.5
Gohir.D10G124300 Gossypium hirsutum HOM05D001937 ORTHO05D003828 7.4e-87 325.5 223 70.4
GSVIVG01020528001 Vitis vinifera HOM05D001937 ORTHO05D003828 3.7e-86 323.2 201 77.6
Glyma.09G215000 Glycine max HOM05D001937 ORTHO05D003828 4.8e-86 322.8 224 71.9
Glyma.04G123500 Glycine max HOM05D001937 ORTHO05D003828 1.8e-85 320.9 224 72.3
VMungo1215G1229 Vigna mungo HOM05D001937 ORTHO05D003828 2.4e-85 320.5 223 70.9
Dinv15990 Davidia involucrata HOM05D001937 ORTHO05D003828 9.0e-85 318.5 224 71.9
Thecc.04G168700 Theobroma cacao HOM05D001937 ORTHO05D003828 1.2e-84 318.2 224 70.1
TPR.G17275 Trifolium pratense HOM05D001937 ORTHO05D003828 1.2e-84 318.2 224 71.0
Duzib212G0078 Durio zibethinus HOM05D001937 ORTHO05D003828 1.5e-84 317.8 259 64.5
Phvul.002G127400 Phaseolus vulgaris HOM05D001937 ORTHO05D003828 1.5e-84 317.8 224 70.5
Dinv24157 Davidia involucrata HOM05D001937 ORTHO05D003828 2.6e-84 317.0 224 72.3
Lalb_Chr05g0215381 Lupinus albus HOM05D001937 ORTHO05D003828 1.7e-83 314.3 224 71.0
TWI14G0424 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 1.7e-83 314.3 218 71.6
DCAR_008727 Daucus carota HOM05D001937 ORTHO05D003828 2.9e-83 313.5 223 69.5
MD04G1047300 Malus domestica HOM05D001937 ORTHO05D003828 2.9e-83 313.5 224 69.2
Medtr5g026660 Medicago truncatula HOM05D001937 ORTHO05D003828 1.9e-82 310.8 224 68.8
Ca_25089_v3 Cicer arietinum L. HOM05D001937 ORTHO05D003828 2.5e-82 310.5 224 68.3
Actinidia28033 Actinidia chinensis HOM05D001937 ORTHO05D003828 4.2e-82 309.7 224 69.6
Psat2g142560 Pisum sativum HOM05D001937 ORTHO05D003828 4.2e-82 309.7 224 67.9
Lj2g0019889 Lotus japonicus HOM05D001937 ORTHO05D003828 5.5e-82 309.3 224 68.8
Nn1g09835 Nelumbo nucifera HOM05D001937 ORTHO05D003828 2.1e-81 307.4 224 70.1
CANSAT11G1347 Cannabis sativa HOM05D001937 ORTHO05D003828 3.6e-81 306.6 224 69.6
Aqoxy4G02410 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 6.1e-81 305.8 224 67.9
Nn2g11723 Nelumbo nucifera HOM05D001937 ORTHO05D003828 6.1e-81 305.8 224 69.2
Peaxi162Scf00610g00377 Petunia axillaris HOM05D001937 ORTHO05D003828 1.8e-80 304.3 198 74.2
CSS0037154 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 2.3e-80 303.9 224 68.8
Rhsim05G0102300 Rhododendron simsii HOM05D001937 ORTHO05D003828 3.0e-80 303.5 269 61.3
Cc02_g20980 Coffea canephora HOM05D001937 ORTHO05D003828 6.7e-80 302.4 224 69.6
Eucgr.I02627 Eucalyptus grandis HOM05D001937 ORTHO05D003828 6.7e-80 302.4 201 72.6
CSS0032005 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 8.8e-80 302.0 224 68.8
Prupe.1G559000 Prunus persica HOM05D001937 ORTHO05D003828 1.1e-79 301.6 224 67.4
CAN.G584.7 Capsicum annuum HOM05D001937 ORTHO05D003828 3.3e-79 300.1 217 70.0
TWI23G0701 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 3.3e-79 300.1 224 66.1
arahy.Tifrunner.gnm1.ann1.4559ZH Arachis hypogaea HOM05D001937 ORTHO05D003828 5.7e-79 299.3 223 66.4
arahy.Tifrunner.gnm1.ann1.9SH8TS Arachis hypogaea HOM05D001937 ORTHO05D003828 5.7e-79 299.3 223 66.4
Lalb_Chr09g0325221 Lupinus albus HOM05D001937 ORTHO05D003828 5.7e-79 299.3 216 68.5
Solyc07g006820.4 Solanum lycopersicum HOM05D001937 ORTHO05D003828 7.4e-79 298.9 214 69.6
Sopen07g002920 Solanum pennellii HOM05D001937 ORTHO05D003828 7.4e-79 298.9 214 69.6
COL.COLO4_05351 Corchorus olitorius HOM05D001937 ORTHO05D003828 2.2e-78 297.4 253 61.7
CiPaw.05G030600 Carya illinoinensis HOM05D001937 ORTHO05D003828 4.8e-78 296.2 224 66.5
CDE08G0555 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 6.3e-78 295.8 224 66.1
Sabra07G0092600 Salix brachista HOM05D001937 ORTHO05D003828 1.1e-77 295.0 301 52.2
Sc25g0001620 Simmondsia chinensis HOM05D001937 ORTHO05D003828 1.1e-77 295.0 203 70.0
Sp3g17140 Schrenkiella parvula HOM05D001937 ORTHO05D003828 1.4e-77 294.7 1226 27.5
Nitab4.5_0000244g0410 Nicotiana tabacum HOM05D001937 ORTHO05D003828 1.8e-77 294.3 214 68.2
ATR1120G087 Amborella trichopoda HOM05D001937 ORTHO05D003828 2.4e-77 293.9 226 66.4
FvH4_1g29900 Fragaria vesca HOM05D001937 ORTHO05D003828 2.4e-77 293.9 224 66.1
PSO063G3818 Papaver somniferum HOM05D001937 ORTHO05D003828 2.4e-77 293.9 223 65.0
Hund12383 Selenicereus undatus HOM05D001937 ORTHO05D003828 3.1e-77 293.5 223 67.7
HanXRQChr06g0170531 Helianthus annuus HOM05D001937 ORTHO05D003828 5.3e-77 292.7 227 67.0
Nitab4.5_0005574g0040 Nicotiana tabacum HOM05D001937 ORTHO05D003828 6.9e-77 292.4 214 67.8
TAR374G1188 Trochodendron aralioides HOM05D001937 ORTHO05D003828 9.1e-77 292.0 228 68.0
RcHm_v2.0_Chr3g0492481 Rosa chinensis HOM05D001937 ORTHO05D003828 1.2e-76 291.6 267 59.9
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 1.5e-76 291.2 224 66.1
HanXRQChr05g0162901 Helianthus annuus HOM05D001937 ORTHO05D003828 2.6e-76 290.4 227 66.5
FAN28G0964 Fragaria x ananassa HOM05D001937 ORTHO05D003828 3.4e-76 290.0 267 60.3
Aqoxy3G01595 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 1.0e-75 288.5 229 65.9
PSO782G5216 Papaver somniferum HOM05D001937 ORTHO05D003828 1.0e-75 288.5 223 64.6
PGR042G3669 Punica granatum HOM05D001937 ORTHO05D003828 1.0e-75 288.5 277 58.1
FAN19G2543 Fragaria x ananassa HOM05D001937 ORTHO05D003828 3.8e-75 286.6 267 59.2
vmacro19954 Vaccinium macrocarpon HOM05D001937 ORTHO05D003828 3.8e-75 286.6 265 59.2
unitig_46.g18832 Utricularia gibba HOM05D001937 ORTHO05D003828 8.5e-75 285.4 223 66.4
EL10Ac3g06089 Beta vulgaris HOM05D001937 ORTHO05D003828 4.2e-74 283.1 223 64.6
MELO3C021095.2 Cucumis melo HOM05D001937 ORTHO05D003828 9.4e-74 282.0 224 64.7
Oeu029676.1 Olea europaea HOM05D001937 ORTHO05D003828 1.6e-73 281.2 224 66.5
SGA_v2.0_scaffold83G26356 Striga asiatica HOM05D001937 ORTHO05D003828 2.1e-73 280.8 224 64.7
AUR62002404 Chenopodium quinoa HOM05D001937 ORTHO05D003828 2.7e-73 280.4 223 63.7
Migut.B00560 Erythranthe guttata HOM05D001937 ORTHO05D003828 2.7e-73 280.4 198 69.2
RcHm_v2.0_Chr5g0013481 Rosa chinensis HOM05D001937 ORTHO05D003828 7.9e-73 278.9 199 68.3
ECA246G2336 Erigeron canadensis HOM05D001937 ORTHO05D003828 1.0e-72 278.5 201 68.2
CsaV3_7G026510 Cucumis sativus L. HOM05D001937 ORTHO05D003828 1.8e-72 277.7 224 63.8
AUR62023793 Chenopodium quinoa HOM05D001937 ORTHO05D003828 2.3e-72 277.3 223 63.2
PSO675G8698 Papaver somniferum HOM05D001937 ORTHO05D003828 3.0e-72 276.9 223 62.3
HPP92_017203 Vanilla planifolia HOM05D001937 ORTHO05D003828 1.1e-71 275.0 224 60.3
FAN26G2897 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.5e-71 274.6 260 58.8
FvH4_3g05980 Fragaria vesca HOM05D001937 ORTHO05D003828 3.7e-70 270.0 221 62.9
SEGI_13781 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 1.4e-69 268.1 223 61.0
Sed0011905 Sechium edule HOM05D001937 ORTHO05D003828 1.0e-67 261.9 224 60.7
Mapoly0010s0177 Marchantia polymorpha HOM05D001937 ORTHO05D003828 1.1e-66 258.5 199 62.8
Pp3c10_350 Physcomitrium patens HOM05D001937 ORTHO05D003828 1.4e-66 258.1 199 63.8
DCAR_019148 Daucus carota HOM05D001937 ORTHO05D003828 1.9e-66 257.7 179 68.7
Pp3c14_1870 Physcomitrium patens HOM05D001937 ORTHO05D003828 4.2e-66 256.5 217 59.9
Lj2C174G11 Lonicera japonica HOM05D001937 ORTHO05D003828 7.2e-66 255.8 148 83.1
AagrBONN_evm.TU.Sc2ySwM_117.3403 Anthoceros agrestis HOM05D001937 ORTHO05D003828 3.0e-64 250.4 200 62.5
Zm00001eb386900 Zea mays HOM05D001937 ORTHO05D003828 1.3e-62 245.0 224 54.9
SMO118G0440 Selaginella moellendorffii HOM05D001937 ORTHO05D003828 6.3e-62 242.7 200 59.0
FAN11G3092 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.8e-61 241.1 199 61.8
FAN25G3599 Fragaria x ananassa HOM05D001937 ORTHO05D003828 7.7e-60 235.7 221 57.5
Lsat_1_v5_gn_6_102941 Lactuca sativa HOM05D001937 ORTHO05D003828 1.1e-58 231.9 146 75.3
FAN23G0892 Fragaria x ananassa HOM05D001937 ORTHO05D003828 7.2e-58 229.2 194 64.4
SHI37218 Sapria himalayana HOM05D001937 ORTHO05D003828 7.2e-50 202.6 153 62.7
CBR_g2821 Chara braunii HOM05D001937 ORTHO05D003828 7.7e-44 182.6 204 45.6
ClCG09G008530 Citrullus lanatus HOM05D001937 ORTHO05D003828 8.9e-40 169.1 292 40.4
CARHR094470 Cardamine hirsuta HOM05D001937 ORTHO05D003828 1.3e-35 155.2 175 57.1
Cpa.g.sc177.20 Carica papaya HOM05D001937 ORTHO05D003828 1.5e-34 151.8 305 38.7
Ciclev10004140m.g Citrus clementina HOM05D001937 ORTHO05D003828 2.8e-33 147.5 266 38.7
TAR374G0100 Trochodendron aralioides HOM05D001937 ORTHO05D003828 2.2e-30 137.9 113 61.9
AL7G43080 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 4.9e-30 136.7 71 87.3
Atru.chr8.1123 Acer truncatum HOM05D001937 ORTHO05D003828 8.3e-30 136.0 115 63.5
Atru.chr3.3789 Acer truncatum HOM05D001937 ORTHO05D003828 1.4e-29 135.2 114 62.3
CDE08G1500 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 3.0e-27 127.5 101 62.4
Cpa.g.c38885 Carica papaya HOM05D001937 ORTHO05D003828 6.6e-27 126.3 70 87.1
Atru.chr8.1124 Acer truncatum HOM05D001937 ORTHO05D003828 8.6e-27 125.9 235 37.9
CARHR094460 Cardamine hirsuta HOM05D001937 ORTHO05D003828 5.6e-26 123.2 81 75.3
RcHm_v2.0_Chr5g0013491 Rosa chinensis HOM05D001937 ORTHO05D003828 1.6e-25 121.7 118 56.8
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 1.1e-24 119.0 79 69.6
HPP92_017202 Vanilla planifolia HOM05D001937 ORTHO05D003828 1.7e-22 111.7 339 34.8
SEGI_35630 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 6.4e-22 109.8 117 51.3
FAN21G3055 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.4e-21 108.6 86 61.6
BraA06t23460Z Brassica rapa HOM05D001937 ORTHO05D003828 3.5e-20 104.0 72 70.8
TAR628G0280 Trochodendron aralioides HOM05D001937 ORTHO05D003828 4.3e-18 97.1 73 63.0
BcaC08g43307 Brassica carinata HOM05D001937 ORTHO05D003828 1.6e-17 95.1 70 65.7
Lsat_1_v5_gn_4_144240 Lactuca sativa HOM05D001937 ORTHO05D003828 5.2e-16 90.1 88 55.7
Cpa.g.sc471.1 Carica papaya HOM05D001937 ORTHO05D003828 1.0e-11 75.9 76 57.9
A06p02530 Brassica napus HOM05D001937 ORTHO05D003828 2.3e-11 74.7 44 77.3
DCAR_010386 Daucus carota HOM05D030126 ORTHO05D029202 2.1e-09 68.2 47 59.6
PRCOL_00000485 Prasinoderma coloniale HOM05D001937 ORTHO05D003828 2.1e-09 68.2 215 23.3
DCAR_010381 Daucus carota HOM05D030126 ORTHO05D029202 8.1e-09 66.2 47 57.4
Lsat_1_v5_gn_5_102200 Lactuca sativa HOM05D001937 ORTHO05D003828 4.0e-08 63.9 75 49.3
vmacro22138 Vaccinium macrocarpon HOM05D000565 ORTHO05D004389 6.8e-08 63.2 53 62.3
Aqoxy3G01594 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 4.4e-07 60.5 172 33.1
Lsat_1_v5_gn_0_31600 Lactuca sativa HOM05D001937 ORTHO05D003828 5.8e-07 60.1 75 48.0
C06p06540 Brassica napus HOM05D001937 ORTHO05D003828 2.2e-06 58.2 38 71.1
BolC6t35766H Brassica oleracea HOM05D001937 ORTHO05D003828 2.2e-06 58.2 38 71.1
Migut.M01747 Erythranthe guttata HOM05D001078 ORTHO05D000927 6.4e-06 56.6 75 40.0
FvH4_6g09360 Fragaria vesca HOM05D001078 ORTHO05D000927 8.4e-06 56.2 75 34.7
FAN05G4732 Fragaria x ananassa HOM05D001078 ORTHO05D000927 8.4e-06 56.2 75 34.7
FAN09G3692 Fragaria x ananassa HOM05D001078 ORTHO05D000927 8.4e-06 56.2 75 34.7
Os06g0645901 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D003828 8.4e-06 56.2 79 46.8


User provided reference genes

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