Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 0.0e+00 1439.5 742 100.0
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 0.0e+00 1130.2 650 83.2
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1099.7 713 78.1
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1099.7 713 78.1
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 0.0e+00 1099.7 713 78.1
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1085.5 712 76.3
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 0.0e+00 1085.5 632 82.4
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 0.0e+00 1075.1 746 73.9
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.5e-311 1072.4 633 81.2
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 1.1e-309 1066.2 624 80.8
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.1e-309 1066.2 747 72.0
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 1.4e-307 1059.3 644 76.7
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 2.3e-307 1058.5 751 74.4
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 5.2e-307 1057.4 758 71.0
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 5.2e-307 1057.4 758 70.7
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 6.8e-307 1057.0 709 76.2
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 5.7e-306 1053.9 644 76.1
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 3.7e-305 1051.2 644 75.6
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 8.3e-305 1050.0 746 71.8
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 1.4e-304 1049.3 634 79.8
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.4e-304 1049.3 644 75.9
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 2.4e-304 1048.5 644 76.1
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 7.0e-304 1047.0 634 79.7
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.0e-303 1045.4 644 75.9
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 3.5e-303 1044.6 688 72.4
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 3.3e-301 1038.1 708 73.4
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 1.6e-300 1035.8 633 75.8
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 1.6e-300 1035.8 743 72.7
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 8.0e-300 1033.5 739 67.9
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 1.4e-296 1022.7 624 76.3
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 2.4e-296 1021.9 642 74.6
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 9.2e-296 1020.0 646 73.2
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 9.2e-296 1020.0 641 73.9
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 6.6e-294 1013.8 627 75.1
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 1.1e-293 1013.1 648 73.0
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 1.5e-293 1012.7 648 73.0
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 3.3e-293 1011.5 626 75.1
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 9.5e-293 1010.0 650 72.6
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 2.1e-292 1008.8 661 72.6
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 8.0e-292 1006.9 643 73.4
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 1.8e-291 1005.7 646 74.5
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 3.1e-291 1005.0 666 71.2
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 4.0e-291 1004.6 624 73.7
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 5.2e-291 1004.2 644 72.8
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.5e-290 1002.7 641 72.9
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 1.1e-288 996.5 622 74.0
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 5.4e-288 994.2 636 72.8
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 3.5e-287 991.5 639 72.3
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 6.0e-287 990.7 628 73.1
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 1.7e-286 989.2 620 73.7
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 2.3e-286 988.8 734 66.5
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 1.1e-285 986.5 659 71.0
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 1.9e-285 985.7 646 70.9
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 2.5e-285 985.3 642 72.0
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 3.3e-285 984.9 697 68.6
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 3.6e-284 981.5 622 74.4
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 8.1e-284 980.3 646 70.7
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 4.0e-283 978.0 649 70.0
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 1.3e-281 973.0 621 73.8
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 2.4e-280 968.8 665 68.6
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 7.1e-280 967.2 651 70.4
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 9.2e-280 966.8 627 71.5
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.2e-279 966.5 731 65.8
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 1.6e-279 966.1 624 72.1
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 3.5e-279 964.9 745 63.2
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 3.9e-278 961.4 647 70.6
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 8.6e-278 960.3 649 69.5
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 2.8e-276 955.3 648 70.1
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 8.1e-276 953.7 688 65.0
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 3.1e-275 951.8 648 69.8
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 4.4e-274 948.0 630 70.8
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 8.4e-273 943.7 635 68.8
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 5.4e-272 941.0 714 65.4
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.5e-269 932.9 753 60.7
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 4.0e-267 924.9 669 66.8
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 5.2e-267 924.5 679 66.1
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 6.9e-267 924.1 621 70.7
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 6.4e-265 917.5 656 67.1
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 6.0e-263 911.0 626 69.2
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.0e-262 908.7 660 69.4
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 6.6e-262 907.5 643 67.3
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 1.4e-259 899.8 631 68.0
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 1.2e-258 896.7 569 73.3
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 2.2e-257 892.5 628 67.8
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 4.9e-257 891.3 646 64.2
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 3.5e-255 885.2 643 64.7
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 1.0e-254 883.6 603 69.0
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 6.7e-254 880.9 649 65.3
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.8e-251 872.8 723 60.3
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 1.8e-251 872.8 624 66.2
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 2.4e-251 872.5 624 66.0
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 3.1e-251 872.1 639 66.7
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 7.6e-250 867.5 632 66.6
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.3e-249 866.7 544 73.7
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 5.5e-248 861.3 616 70.1
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.2e-247 860.1 647 64.5
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.7e-247 859.0 558 74.9
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 3.5e-247 858.6 711 60.9
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 5.3e-243 844.7 611 67.6
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 3.2e-240 835.5 641 64.3
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.9e-238 828.6 696 59.8
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.2e-236 822.8 645 63.6
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.8e-235 819.7 754 56.4
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.4e-230 803.5 645 63.1
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 1.1e-229 800.4 642 60.4
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 1.5e-229 800.0 645 58.9
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 7.4e-229 797.7 657 58.4
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 6.3e-228 794.7 650 61.5
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 2.6e-221 772.7 650 59.5
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 8.5e-217 757.7 746 54.8
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 6.3e-212 741.5 672 54.6
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 3.1e-211 739.2 626 56.7
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 7.0e-211 738.0 680 55.6
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 2.0e-210 736.5 600 61.0
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 1.3e-196 690.6 641 56.9
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 2.2e-196 689.9 439 73.3
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 4.1e-195 685.6 653 55.0
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 5.4e-195 685.3 448 72.3
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.9e-193 679.5 545 62.9
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 4.2e-192 675.6 568 60.2
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 8.0e-191 671.4 452 69.9
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 6.3e-188 661.8 645 55.2
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 7.0e-179 631.7 459 66.9
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 6.6e-177 625.2 393 75.3
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 2.5e-176 623.2 444 66.7
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.7e-172 609.4 446 65.2
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 5.4e-171 605.5 436 66.1
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 1.8e-166 590.5 677 46.1
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 6.4e-164 582.0 426 62.4
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.4e-163 578.9 426 62.4
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 9.2e-155 551.6 733 41.1
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 3.6e-143 513.1 444 58.6
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 2.6e-141 506.9 654 41.7
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 5.1e-137 492.7 331 71.9
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 2.4e-134 483.8 687 41.2
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 3.8e-132 476.5 450 54.4
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 4.8e-127 459.5 619 38.4
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.9e-105 386.7 440 47.7
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 7.7e-93 345.9 225 72.0
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 3.6e-90 337.0 187 81.8
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 1.2e-88 332.0 193 76.2
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 8.3e-87 325.9 182 80.8
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 2.2e-84 317.8 192 77.6
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.4e-80 303.9 168 79.8
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 8.3e-79 299.3 185 73.5
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 8.3e-79 299.3 185 73.5
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 3.9e-68 263.8 185 64.9
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.9e-67 261.5 180 68.3
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 4.3e-67 260.4 155 73.5
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.3e-60 238.0 135 77.0
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 4.3e-59 233.8 153 72.5
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 1.7e-55 221.9 150 68.7
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.4e-46 191.4 104 78.8
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 5.6e-43 180.3 113 77.9
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 4.9e-39 167.2 111 70.3
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 3.0e-36 157.9 83 81.9
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.0e-36 157.9 109 69.7
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 8.7e-36 156.4 115 63.5
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 1.4e-30 139.0 79 79.7
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 1.6e-26 125.6 72 79.2
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 3.1e-25 121.3 76 68.4
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.7e-23 115.5 153 42.5
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 1.4e-22 112.5 85 61.2
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 8.7e-20 103.2 69 66.7
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.9e-11 75.5 50 66.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 2.1e-10 72.0 50 70.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 6.9e-09 67.0 44 70.5
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 7.6e-08 63.5 43 72.1
Cre17.g713900 Chlamydomonas reinhardtii HOM05D004736 ORTHO05D006424 9.3e-06 56.6 65 38.5


User provided reference genes

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