Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 0.0e+00 1414.4 707 100.0
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 4.1e-285 984.6 716 70.5
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.3e-280 968.8 710 69.3
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 8.8e-264 913.7 699 66.4
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 3.2e-237 825.5 706 64.7
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.8e-225 785.8 725 59.4
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.1e-213 747.3 717 56.3
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 2.4e-208 729.6 710 59.0
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 2.4e-208 729.6 711 58.8
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 3.1e-208 729.2 718 58.2
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 4.0e-208 728.8 718 58.5
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 3.4e-207 725.7 708 58.5
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 3.3e-194 682.6 682 56.7
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 9.0e-192 674.5 672 57.6
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 2.0e-183 646.7 729 50.2
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.7e-182 643.7 473 70.6
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.9e-157 560.5 745 45.5
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 5.5e-157 558.9 737 44.6
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 4.4e-154 549.3 763 43.5
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.3e-153 547.7 769 43.7
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 3.7e-153 546.2 733 44.6
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.6e-151 540.8 753 43.7
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 5.9e-151 538.9 753 43.6
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.5e-149 533.5 715 44.2
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.6e-148 530.8 727 44.2
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 2.7e-148 530.0 745 43.0
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 8.0e-148 528.5 757 43.7
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.0e-147 528.1 730 43.2
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 3.0e-147 526.6 750 42.9
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 6.8e-147 525.4 740 43.6
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 3.4e-146 523.1 725 43.9
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 9.8e-146 521.5 743 42.3
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 2.2e-145 520.4 744 42.9
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.8e-145 520.0 744 42.7
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 6.3e-145 518.8 722 43.1
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.4e-144 517.7 364 73.6
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 5.9e-143 512.3 687 42.9
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 2.3e-142 510.4 737 41.8
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 6.6e-142 508.8 857 39.0
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 6.6e-142 508.8 706 42.8
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 2.5e-141 506.9 731 43.8
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 4.2e-141 506.1 743 42.7
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 6.1e-140 502.3 718 42.3
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 1.8e-139 500.7 711 42.2
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 6.8e-139 498.8 693 43.9
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 7.5e-138 495.4 701 42.7
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 3.7e-137 493.0 738 41.6
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 3.7e-137 493.0 718 44.0
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.1e-136 491.5 746 41.8
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.8e-136 490.7 712 43.3
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.8e-136 490.7 721 44.2
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 3.1e-136 490.0 746 40.6
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 7.0e-136 488.8 727 41.5
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.2e-135 488.0 755 40.9
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 3.5e-135 486.5 749 41.7
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 4.5e-135 486.1 732 41.9
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 5.9e-135 485.7 753 41.4
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 5.9e-135 485.7 715 42.1
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 2.3e-134 483.8 734 40.2
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.1e-133 481.5 739 41.8
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.5e-133 481.1 733 41.1
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.5e-133 481.1 692 42.8
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 1.9e-133 480.7 752 41.0
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 3.3e-133 479.9 690 42.6
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 3.3e-133 479.9 699 42.3
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.6e-132 477.6 699 42.6
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.1e-132 477.2 733 40.8
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.1e-132 477.2 732 41.7
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 2.8e-132 476.9 722 41.8
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.8e-132 476.9 698 42.4
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.0e-131 474.9 691 42.7
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 5.2e-131 472.6 717 40.7
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 6.8e-131 472.2 592 46.5
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 8.9e-131 471.9 701 41.7
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 5.8e-130 469.2 693 41.6
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 3.7e-129 466.5 714 42.0
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 4.1e-128 463.0 687 41.8
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 4.6e-127 459.5 712 42.0
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 6.0e-127 459.1 687 41.8
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 7.8e-127 458.8 700 41.9
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 6.6e-126 455.7 710 39.6
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 6.6e-126 455.7 703 41.1
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.5e-125 454.5 715 40.7
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 9.5e-125 451.8 696 40.2
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 2.3e-123 447.2 756 39.4
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.5e-122 444.5 725 41.0
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 3.7e-121 439.9 604 42.9
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.1e-120 438.3 703 41.1
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.4e-120 437.2 685 39.7
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.4e-120 437.2 705 41.1
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 7.0e-120 435.6 709 38.5
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.9e-117 427.6 718 37.9
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 3.3e-117 426.8 696 39.7
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 7.3e-117 425.6 689 39.2
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.8e-116 423.7 711 39.1
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 6.2e-116 422.5 696 39.5
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 2.0e-114 417.5 670 39.7
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 7.5e-114 415.6 755 38.0
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.4e-112 411.4 692 38.3
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.7e-110 404.4 590 43.7
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 2.3e-110 404.1 438 50.5
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 5.1e-110 402.9 680 37.9
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 5.2e-107 392.9 676 37.0
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 9.9e-106 388.7 542 44.5
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 8.4e-105 385.6 690 36.8
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 7.8e-103 379.0 448 46.7
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 2.5e-101 374.0 549 42.1
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 4.7e-100 369.8 536 42.5
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 9.0e-99 365.5 482 46.3
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.7e-97 361.3 726 34.6
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.4e-96 356.3 575 40.0
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 4.3e-93 346.7 459 47.1
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 6.2e-84 316.2 525 39.4
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.4e-83 314.3 411 45.7
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.0e-82 311.2 737 31.3
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 4.5e-82 310.1 688 33.3
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.2e-80 303.9 378 46.8
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.7e-79 300.8 736 31.2
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 6.5e-73 279.6 725 32.0
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.5e-69 268.5 706 29.6
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 2.9e-65 254.2 365 46.3
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.2e-64 250.8 209 63.2
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 5.1e-62 243.4 359 42.6
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.7e-60 238.4 289 47.4
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.2e-57 228.0 380 39.2
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.1e-53 215.7 302 44.7
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 3.8e-49 200.7 369 37.4
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.5e-48 196.8 613 28.2
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 2.6e-45 188.0 822 24.2
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 4.4e-45 187.2 164 56.1
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.5e-40 171.4 219 48.9
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.7e-39 167.2 227 48.0
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 9.7e-37 159.5 287 32.8
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 2.8e-36 157.9 473 28.8
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.4e-35 154.8 229 42.4
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 2.0e-34 151.8 222 41.4
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 5.9e-34 150.2 141 50.4
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 3.2e-32 144.4 95 67.4
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-31 142.5 728 24.0
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.6e-31 142.1 149 51.7
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 1.5e-29 135.6 457 28.4
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.5e-29 135.6 95 65.3
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 4.8e-28 130.6 256 35.5
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.1e-27 129.4 271 36.5
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.2e-23 115.9 94 58.5
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 4.0e-22 110.9 148 39.9
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 3.5e-18 97.8 154 44.2
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.5e-18 97.4 65 73.8
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 1.2e-15 89.4 75 58.7
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.1e-15 87.0 207 30.9
AT4G01340 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 4.0e-14 84.3 59 69.5
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.3e-12 79.3 193 30.1
AT4G01335 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 3.7e-12 77.8 94 51.1
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 1.1e-11 76.3 60 53.3
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 7.0e-11 73.6 287 24.0
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 1.6e-10 72.4 92 46.7
Carub.0005s0182 Capsella rubella HOM05D000082 ORTHO05D000038 8.6e-09 66.6 42 61.9
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 8.6e-09 66.6 181 32.6
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 7.3e-08 63.5 217 26.3
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 6.2e-07 60.5 75 40.0
BcaC02g09546 Brassica carinata HOM05D037504 ORTHO05D032183 8.0e-07 60.1 172 30.8
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.1e-06 59.7 68 41.2


User provided reference genes

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