Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 5.1e-148 527.7 264 100.0
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 5.1e-116 421.4 240 87.9
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 3.4e-112 408.7 240 85.8
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 7.7e-112 407.5 241 85.9
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.8e-111 405.2 241 85.5
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.8e-111 405.2 240 85.0
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 4.7e-109 398.3 241 83.8
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 2.2e-103 379.4 238 81.5
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 3.8e-103 378.6 238 81.9
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 6.5e-103 377.9 238 80.7
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 1.9e-102 376.3 238 79.4
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 5.2e-100 368.2 239 79.5
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 2.6e-99 365.9 241 78.0
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 2.6e-99 365.9 241 78.4
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.2e-96 357.1 240 75.4
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-95 353.6 240 74.2
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 7.2e-94 347.8 241 73.9
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.8e-89 333.2 241 69.3
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 9.1e-89 330.9 239 68.6
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 2.2e-87 326.2 205 77.6
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.2e-86 322.0 241 68.0
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 8.0e-85 317.8 241 66.8
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.0e-84 315.8 241 66.8
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 2.6e-83 312.8 243 65.0
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 2.8e-82 309.3 238 70.2
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 3.7e-82 308.9 241 66.0
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 3.1e-81 305.8 246 67.5
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.0e-80 303.1 240 64.6
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.5e-80 302.4 189 78.3
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 4.5e-80 302.0 244 63.9
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.5e-80 302.0 245 65.3
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.5e-80 302.0 245 65.3
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 4.5e-80 302.0 245 65.3
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 7.7e-80 301.2 249 64.7
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 1.0e-79 300.8 238 66.4
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.3e-79 300.4 247 63.2
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.3e-79 300.4 188 78.2
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 3.8e-79 298.9 197 75.6
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 8.6e-79 297.7 187 78.1
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 8.6e-79 297.7 211 72.5
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.1e-78 297.4 190 75.3
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 1.1e-78 297.4 238 63.9
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 1.5e-78 297.0 249 64.7
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.5e-78 297.0 182 79.1
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 1.9e-78 296.6 184 78.3
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 2.5e-78 296.2 188 76.6
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 2.5e-78 296.2 234 66.7
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 2.5e-78 296.2 213 69.5
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 2.5e-78 296.2 241 64.3
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 4.3e-78 295.4 245 64.5
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 4.3e-78 295.4 236 66.9
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 5.6e-78 295.0 193 76.2
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 5.6e-78 295.0 167 82.0
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 9.5e-78 294.3 167 82.6
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 9.5e-78 294.3 242 62.0
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.2e-77 293.9 193 73.6
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.6e-77 293.5 181 77.9
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.1e-77 293.1 208 71.2
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 2.1e-77 293.1 192 75.5
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 3.6e-77 292.4 244 65.6
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 3.6e-77 292.4 240 62.5
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 6.1e-77 291.6 235 65.1
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 8.0e-77 291.2 240 63.3
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 8.0e-77 291.2 195 74.9
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 1.0e-76 290.8 234 65.8
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.0e-76 290.8 184 76.6
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 1.4e-76 290.4 251 62.5
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.8e-76 290.0 181 76.8
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 2.3e-76 289.7 251 63.3
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 2.3e-76 289.7 246 63.0
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.3e-76 289.7 242 62.0
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 3.0e-76 289.3 238 63.9
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 4.0e-76 288.9 243 61.7
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 5.2e-76 288.5 240 62.1
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 5.2e-76 288.5 224 65.6
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 6.8e-76 288.1 218 68.8
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 6.8e-76 288.1 187 74.9
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 6.8e-76 288.1 237 61.6
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.8e-76 288.1 236 66.1
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 6.8e-76 288.1 186 75.3
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 8.9e-76 287.7 244 61.9
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 8.9e-76 287.7 181 79.0
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.2e-75 287.3 241 61.0
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.5e-75 287.0 211 70.6
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.5e-75 287.0 237 65.4
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.5e-75 287.0 214 67.3
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.5e-75 287.0 215 67.0
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 2.0e-75 286.6 249 63.5
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 3.4e-75 285.8 235 64.3
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 5.7e-75 285.0 240 61.2
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 5.7e-75 285.0 241 62.2
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 5.7e-75 285.0 242 63.2
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 5.7e-75 285.0 191 73.3
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.5e-75 284.6 240 61.7
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 7.5e-75 284.6 183 73.2
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 7.5e-75 284.6 192 73.4
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 9.8e-75 284.3 167 79.0
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 2.2e-74 283.1 242 60.7
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 2.9e-74 282.7 242 60.3
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.9e-74 282.7 237 62.4
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 4.9e-74 282.0 211 69.2
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 8.3e-74 281.2 236 61.4
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 8.3e-74 281.2 235 63.4
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 8.3e-74 281.2 230 65.2
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.1e-73 280.8 244 62.3
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.4e-73 280.4 208 67.8
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 1.4e-73 280.4 243 62.6
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 2.4e-73 279.6 167 79.0
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 2.4e-73 279.6 242 60.7
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 3.2e-73 279.3 165 80.6
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 3.2e-73 279.3 242 60.3
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 3.2e-73 279.3 242 60.3
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.1e-73 278.9 240 60.4
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 4.1e-73 278.9 227 63.4
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 7.0e-73 278.1 167 79.6
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 9.2e-73 277.7 239 59.8
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 1.7e-71 273.5 210 63.8
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 2.3e-71 273.1 244 59.8
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 8.6e-71 271.2 241 58.5
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 8.6e-71 271.2 235 60.9
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 9.5e-70 267.7 193 69.9
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.4e-68 263.8 205 64.4
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.4e-65 253.8 173 69.9
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.9e-65 253.4 244 57.0
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.2e-64 250.8 158 75.9
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 3.5e-64 249.2 190 65.8
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 4.6e-64 248.8 168 69.0
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 1.7e-63 246.9 246 54.9
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.7e-63 246.9 168 67.3
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 3.0e-63 246.1 168 71.4
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 1.1e-62 244.2 224 58.9
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 9.5e-62 241.1 158 73.4
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.2e-61 240.7 161 70.2
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 3.1e-60 236.1 164 68.3
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 8.9e-60 234.6 182 63.2
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 2.4e-57 226.5 152 71.7
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 2.1e-56 223.4 202 58.4
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 1.2e-53 214.2 239 54.0
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.6e-53 213.8 202 59.9
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 2.3e-52 209.9 200 57.0
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 5.8e-51 205.3 217 52.1
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 9.9e-51 204.5 194 54.1
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 8.4e-50 201.4 118 78.8
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 6.0e-48 195.3 177 59.9
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 3.3e-46 189.5 121 75.2
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.0e-44 182.6 169 53.3
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 1.3e-42 177.6 124 71.0
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.9e-42 176.4 136 67.6
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.7e-40 169.9 107 79.4
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 1.3e-39 167.5 167 55.1
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 5.3e-36 155.6 224 42.9
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 6.9e-36 155.2 168 52.4
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 2.6e-35 153.3 114 68.4
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 6.0e-32 142.1 82 81.7
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 2.4e-28 130.2 103 61.2
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.5e-27 127.5 63 95.2
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 2.0e-27 127.1 63 93.7
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.1e-24 117.1 114 57.0
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 1.9e-22 110.5 79 65.8
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 4.8e-21 105.9 65 73.8
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 6.2e-21 105.5 123 48.8
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.8e-18 96.3 86 58.1
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 2.5e-14 83.6 213 32.9
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.1e-12 76.3 52 67.3
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 9.0e-12 75.1 86 41.9
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.0e-11 73.9 150 36.7
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 5.9e-11 72.4 123 37.4
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 7.6e-11 72.0 133 39.1
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 2.9e-10 70.1 70 55.7
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 2.9e-10 70.1 198 29.3
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.7e-08 63.5 55 56.4
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 4.6e-08 62.8 44 59.1
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 6.7e-07 58.9 102 37.3
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 1.1e-06 58.2 101 37.6


User provided reference genes

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