Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 0.0e+00 1312.4 699 100.0
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 3.7e-254 881.7 720 67.2
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 2.2e-251 872.5 727 66.4
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 4.6e-249 864.8 718 66.0
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 1.1e-242 843.6 726 65.4
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 1.3e-238 830.1 846 57.9
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 2.1e-233 812.8 749 62.9
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 7.5e-215 751.1 730 58.8
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 8.6e-203 711.1 849 52.9
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 3.3e-202 709.1 845 52.9
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 1.2e-199 700.7 820 53.9
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 1.9e-197 693.3 824 53.5
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 3.6e-185 652.5 820 52.3
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 3.4e-159 566.2 731 45.7
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 2.0e-151 540.4 706 45.2
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 5.8e-151 538.9 709 50.4
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 5.8e-151 538.9 716 44.7
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 1.0e-150 538.1 715 45.5
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 1.3e-150 537.7 735 44.1
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 1.7e-150 537.3 715 46.4
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 2.2e-150 537.0 725 45.5
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 3.2e-149 533.1 716 48.9
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 4.2e-149 532.7 723 45.6
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 1.2e-148 531.2 714 45.1
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 2.7e-148 530.0 729 45.0
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 7.9e-148 528.5 719 43.8
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 1.3e-147 527.7 726 45.2
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 1.3e-147 527.7 717 46.7
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 2.3e-147 526.9 735 44.2
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 8.7e-147 525.0 734 43.9
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 1.5e-146 524.2 722 44.2
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 1.1e-144 518.1 729 44.6
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.1e-144 518.1 719 44.5
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 2.4e-144 516.9 727 44.2
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 2.6e-143 513.5 728 43.4
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 5.9e-143 512.3 723 42.9
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 7.7e-143 511.9 713 44.2
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 7.7e-143 511.9 715 43.4
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 7.7e-143 511.9 722 43.4
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 1.0e-142 511.5 730 43.2
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 2.9e-142 510.0 711 47.3
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 2.9e-142 510.0 724 43.5
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.4e-141 507.7 735 43.3
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 3.2e-141 506.5 709 45.1
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 5.5e-141 505.8 716 43.9
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 4.6e-140 502.7 714 44.0
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 7.9e-140 501.9 718 42.3
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 1.0e-139 501.5 768 41.3
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 5.7e-138 495.7 714 42.6
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 6.3e-137 492.3 724 43.1
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 8.2e-137 491.9 719 43.0
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 1.4e-136 491.1 713 41.5
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.4e-136 490.3 724 43.2
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 5.3e-136 489.2 759 41.4
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 6.9e-136 488.8 717 42.5
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 1.5e-135 487.6 723 42.7
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 7.7e-135 485.3 725 42.1
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 2.2e-134 483.8 752 41.8
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 8.5e-134 481.9 772 41.6
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 3.2e-133 479.9 780 41.3
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 7.2e-133 478.8 720 41.0
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 1.2e-132 478.0 712 41.7
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 3.6e-132 476.5 718 41.5
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 7.9e-132 475.3 721 42.0
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 3.0e-131 473.4 714 42.7
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 8.8e-131 471.9 742 41.6
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 1.5e-130 471.1 712 41.7
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 3.3e-130 469.9 717 41.6
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 5.7e-130 469.2 716 42.2
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 9.7e-130 468.4 722 40.6
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 1.7e-129 467.6 776 39.7
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 2.8e-129 466.8 716 40.9
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 8.2e-129 465.3 716 42.5
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.1e-128 464.9 698 41.4
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 1.5e-127 461.1 748 40.9
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 1.5e-127 461.1 796 39.6
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 3.5e-127 459.9 714 41.2
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.0e-126 458.4 767 40.7
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 1.3e-126 458.0 680 41.8
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.1e-124 449.1 717 40.7
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 8.0e-124 448.7 775 39.2
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 8.8e-123 445.3 710 39.4
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 2.2e-121 440.7 687 43.5
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 2.8e-121 440.3 717 41.3
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 1.1e-120 438.3 768 38.0
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 1.5e-117 427.9 775 37.7
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 1.9e-117 427.6 763 38.5
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.5e-117 427.2 775 37.5
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 2.1e-116 424.1 726 39.8
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 4.7e-116 422.9 712 39.2
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 1.0e-115 421.8 730 39.2
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.2e-114 418.3 627 42.4
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 2.7e-111 407.1 701 37.9
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 1.6e-108 397.9 765 38.0
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 4.7e-108 396.4 655 41.1
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 2.3e-107 394.0 735 36.5
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.2e-106 391.7 725 37.8
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 3.4e-106 390.2 670 40.1
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.0e-103 380.9 752 36.6
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 1.0e-102 378.6 696 36.9
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 8.0e-100 369.0 697 37.2
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.2e-95 355.1 752 35.6
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 1.9e-93 347.8 734 35.4
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.0e-90 337.8 719 34.2
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 2.0e-82 311.2 556 37.6
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 6.4e-81 306.2 523 40.3
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 4.1e-72 276.9 632 33.9
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 1.5e-66 258.5 728 28.7
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 3.0e-62 244.2 677 31.6
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 3.1e-59 234.2 243 49.4
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 6.9e-59 233.0 313 44.7
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 4.9e-57 226.9 692 29.2
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 5.3e-51 206.8 172 62.8
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 5.3e-51 206.8 172 62.8
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 4.9e-49 200.3 895 26.5
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 3.0e-46 191.0 709 27.5
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 1.5e-45 188.7 196 48.0
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 1.9e-45 188.3 319 40.1
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.3e-45 187.6 273 38.5
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 4.9e-41 173.7 706 25.5
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 8.2e-36 156.4 688 27.3
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 8.7e-30 136.3 252 35.3
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 2.2e-28 131.7 432 27.3
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 5.5e-24 117.1 126 46.8
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 2.2e-20 105.1 132 46.2
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 3.1e-19 101.3 69 66.7
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 3.2e-16 91.3 147 36.7
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 7.2e-16 90.1 82 52.4
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 3.6e-15 87.8 100 45.0
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.3e-14 85.1 103 45.6
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 1.8e-11 75.5 238 32.4
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 2.3e-06 58.5 54 48.1


User provided reference genes

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