Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.8e-139 499.2 251 100.0
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.2e-116 422.5 253 85.4
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.0e-113 413.7 254 83.1
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.5e-112 409.1 254 81.9
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 3.4e-109 398.7 254 80.3
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 2.3e-105 386.0 257 76.3
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.4e-101 372.1 254 74.0
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 6.4e-100 367.9 253 72.7
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.4e-99 366.7 255 73.7
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.6e-98 363.2 254 72.0
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 2.1e-98 362.8 254 72.8
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 4.6e-98 361.7 253 71.5
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 6.6e-97 357.8 250 73.2
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 6.6e-97 357.8 250 73.6
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 1.1e-96 357.1 249 73.5
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 1.6e-95 353.2 249 72.7
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 3.1e-94 349.0 251 72.5
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 7.6e-93 344.4 254 68.9
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 7.6e-93 344.4 256 69.9
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-92 343.6 256 70.3
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.3e-92 343.6 251 70.5
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 8.4e-92 340.9 253 69.2
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.5e-88 330.1 241 69.3
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 3.6e-87 325.5 255 67.8
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.5e-85 320.1 250 67.2
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.2e-84 316.2 255 67.1
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 4.9e-84 315.1 249 66.3
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.2e-83 312.4 258 64.7
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.2e-83 312.4 254 65.7
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 4.2e-83 312.0 250 65.2
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 1.2e-82 310.5 217 69.6
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.2e-82 310.5 224 72.3
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 4.6e-82 308.5 265 63.8
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 6.0e-82 308.1 261 62.8
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.0e-81 307.4 241 67.2
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.3e-81 307.0 258 64.3
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 2.3e-81 306.2 250 64.0
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 5.1e-81 305.1 250 63.6
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 5.1e-81 305.1 250 63.6
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 5.1e-81 305.1 253 63.2
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 8.7e-81 304.3 230 68.7
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.5e-80 303.5 235 67.7
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.5e-80 303.5 235 67.7
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 1.9e-80 303.1 247 64.8
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.5e-80 302.8 226 69.5
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.5e-80 302.8 235 67.7
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 3.3e-80 302.4 240 66.2
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 4.3e-80 302.0 241 65.6
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 4.3e-80 302.0 200 76.0
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.3e-79 300.4 200 75.0
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.3e-79 300.4 232 67.7
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.3e-79 300.4 203 73.9
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 1.6e-79 300.1 239 66.1
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 2.1e-79 299.7 244 65.6
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 2.1e-79 299.7 259 61.8
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 3.7e-79 298.9 256 62.5
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 4.8e-79 298.5 229 67.2
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 4.8e-79 298.5 252 64.7
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 6.2e-79 298.1 257 62.3
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 6.2e-79 298.1 250 66.0
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 8.1e-79 297.7 254 62.6
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 8.1e-79 297.7 224 68.3
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.1e-78 297.4 247 66.4
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 1.1e-78 297.4 259 61.8
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 1.1e-78 297.4 252 62.7
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.4e-78 297.0 240 65.0
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.8e-78 296.6 244 67.2
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.8e-78 296.6 235 66.0
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.8e-78 296.6 248 62.9
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 2.4e-78 296.2 244 64.3
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 3.1e-78 295.8 250 62.8
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 5.3e-78 295.0 251 64.9
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 5.3e-78 295.0 243 64.6
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.9e-78 294.7 200 74.5
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.9e-78 294.7 238 64.7
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 6.9e-78 294.7 254 63.4
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 9.0e-78 294.3 192 74.0
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 9.0e-78 294.3 228 67.5
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 1.2e-77 293.9 260 62.7
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 1.2e-77 293.9 249 64.7
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 1.5e-77 293.5 252 63.9
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.5e-77 293.5 257 63.8
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 2.0e-77 293.1 181 79.0
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 2.0e-77 293.1 240 66.2
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 2.6e-77 292.7 181 76.8
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 2.6e-77 292.7 197 72.1
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 3.4e-77 292.4 218 68.3
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 3.4e-77 292.4 226 69.5
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 3.4e-77 292.4 223 67.3
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 4.5e-77 292.0 255 63.5
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 1.0e-76 290.8 256 59.8
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.0e-76 290.8 258 61.2
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 1.3e-76 290.4 184 76.6
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 1.7e-76 290.0 181 77.9
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.2e-76 289.7 259 61.8
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 2.2e-76 289.7 227 65.6
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 2.2e-76 289.7 238 63.4
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.9e-76 289.3 253 62.5
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 3.8e-76 288.9 253 62.8
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 4.9e-76 288.5 258 61.6
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 8.4e-76 287.7 254 63.0
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.4e-75 287.0 254 61.8
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.9e-75 286.6 215 68.4
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.9e-75 286.6 257 60.7
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.9e-75 286.6 262 61.8
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.9e-75 286.6 182 75.3
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 5.5e-75 285.0 189 73.5
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 7.1e-75 284.6 224 66.5
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 9.3e-75 284.3 207 71.0
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 9.3e-75 284.3 253 62.8
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 1.2e-74 283.9 258 61.6
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.1e-74 283.1 259 59.5
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.7e-74 282.7 227 64.8
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.0e-74 281.6 252 61.5
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 7.9e-74 281.2 235 63.0
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.7e-73 278.1 258 61.2
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.1e-72 277.3 194 69.6
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.3e-72 275.8 230 62.6
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 4.5e-69 265.4 171 77.2
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 7.6e-69 264.6 217 63.6
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 1.3e-68 263.8 261 57.1
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.7e-68 263.5 227 62.6
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.2e-66 257.3 197 67.0
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.6e-66 256.9 186 68.8
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.0e-65 254.2 195 65.1
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.8e-65 253.4 161 75.2
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 2.3e-65 253.1 208 63.0
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 5.1e-65 251.9 189 67.2
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 5.1e-65 251.9 182 68.1
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.1e-64 250.8 189 64.6
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.1e-64 250.8 179 67.0
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 3.3e-64 249.2 199 60.8
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 1.3e-63 247.3 198 61.6
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 2.3e-57 226.5 157 72.6
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.4e-56 221.5 175 62.9
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 3.1e-54 216.1 153 69.3
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.5e-53 213.8 244 53.3
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 1.6e-50 203.8 185 60.5
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 2.1e-50 203.4 234 52.1
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 6.1e-50 201.8 208 54.8
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 7.9e-50 201.4 133 70.7
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 7.4e-48 194.9 203 52.7
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 9.7e-48 194.5 211 51.7
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 2.2e-47 193.4 115 79.1
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.1e-46 189.1 121 78.5
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 7.2e-43 178.3 255 47.1
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.2e-42 177.6 147 63.3
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 2.0e-40 170.2 128 68.0
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 9.7e-40 167.9 244 46.3
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 2.2e-39 166.8 255 45.9
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.8e-39 166.4 207 48.8
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 2.0e-37 160.2 145 60.0
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.5e-37 159.5 169 55.6
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 4.7e-34 149.1 97 72.2
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.0e-28 131.3 78 79.5
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 1.3e-28 131.0 78 78.2
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 8.0e-26 121.7 79 74.7
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 5.7e-24 115.5 96 56.2
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.3e-23 112.1 115 55.7
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 5.9e-21 105.5 97 55.7
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.1e-19 101.3 124 47.6
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.8e-18 96.7 88 56.8
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 4.4e-16 89.4 199 35.2
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 1.1e-11 74.7 123 35.0
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.5e-11 73.6 50 70.0
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 2.8e-10 70.1 71 42.3
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 8.0e-10 68.6 112 38.4
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.8e-09 67.4 55 61.8
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.0e-08 63.9 132 34.8
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 2.6e-08 63.5 45 68.9
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 9.8e-08 61.6 156 32.1
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-07 61.2 46 56.5
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 1.4e-06 57.8 62 50.0


User provided reference genes

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