Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.7e-249 865.5 433 100.0
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 6.3e-196 687.6 409 84.8
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 9.1e-179 630.6 409 77.5
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 1.0e-174 617.1 408 76.5
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 2.3e-174 615.9 406 75.9
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 2.8e-167 592.4 402 73.4
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 2.3e-166 589.3 407 71.3
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 1.2e-165 587.0 408 71.8
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 1.5e-165 586.6 410 71.0
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 1.3e-164 583.6 406 71.4
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 4.9e-164 581.6 405 71.9
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 6.4e-164 581.3 408 71.1
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 8.3e-164 580.9 440 67.0
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 1.4e-163 580.1 410 70.0
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.9e-163 579.7 440 66.8
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 5.4e-163 578.2 443 66.6
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 7.0e-163 577.8 407 71.3
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 1.6e-162 576.6 410 70.2
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.6e-162 576.6 440 66.4
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.0e-162 576.2 440 66.4
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 6.0e-162 574.7 440 66.4
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 7.8e-162 574.3 409 70.7
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 2.3e-161 572.8 408 69.1
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 6.6e-161 571.2 405 69.1
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 6.6e-161 571.2 443 66.1
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 1.1e-160 570.5 386 72.0
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 5.6e-160 568.2 407 69.0
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 7.3e-160 567.8 408 69.6
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 1.6e-159 566.6 408 69.4
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 4.7e-159 565.1 443 65.2
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 8.0e-159 564.3 407 68.6
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 3.1e-158 562.4 408 68.4
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 2.6e-157 559.3 408 67.4
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 7.5e-157 557.8 407 68.1
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 9.8e-157 557.4 409 68.7
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 1.7e-156 556.6 411 69.1
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 2.9e-156 555.8 397 69.0
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 4.9e-156 555.1 404 68.8
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 4.9e-156 555.1 407 67.6
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 8.3e-156 554.3 400 68.0
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 1.4e-155 553.5 401 69.6
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 1.4e-155 553.5 397 69.0
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 1.4e-155 553.5 407 67.3
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 1.9e-155 553.1 432 66.2
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 5.4e-155 551.6 409 67.7
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 5.4e-155 551.6 407 68.3
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.2e-154 550.4 281 97.2
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 1.6e-154 550.1 399 67.7
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 1.6e-154 550.1 411 67.6
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 2.1e-154 549.7 442 64.5
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 2.7e-154 549.3 409 67.2
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 2.7e-154 549.3 409 67.2
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 2.7e-154 549.3 415 67.5
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 3.5e-154 548.9 396 69.2
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 3.5e-154 548.9 411 69.6
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 1.0e-153 547.4 405 67.7
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 1.3e-153 547.0 401 67.8
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 3.9e-153 545.4 406 67.2
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 1.1e-152 543.9 406 67.2
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 4.3e-152 542.0 446 63.5
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 5.6e-152 541.6 397 68.0
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 5.6e-152 541.6 397 68.3
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 5.6e-152 541.6 404 66.8
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 1.6e-151 540.0 406 66.0
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 1.2e-149 533.9 388 68.3
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 1.2e-149 533.9 411 67.2
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 2.6e-149 532.7 410 65.1
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 4.4e-149 531.9 410 65.1
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 5.8e-149 531.6 401 67.3
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 9.9e-149 530.8 410 66.8
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 2.2e-148 529.6 394 68.5
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 2.2e-148 529.6 392 66.1
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 2.9e-148 529.3 409 65.0
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 1.1e-147 527.3 412 64.3
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 2.4e-147 526.2 406 64.0
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 3.2e-147 525.8 410 64.6
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 3.5e-146 522.3 364 70.9
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 7.8e-146 521.2 411 65.9
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 6.2e-143 511.5 407 64.4
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 6.2e-143 511.5 409 63.8
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 1.1e-142 510.8 401 64.3
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 1.2e-141 507.3 406 64.0
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 2.0e-141 506.5 407 63.4
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 9.9e-141 504.2 408 61.8
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 2.2e-140 503.1 406 62.8
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 2.2e-140 503.1 407 62.7
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 4.9e-140 501.9 409 62.8
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 1.9e-139 500.0 409 62.6
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 1.9e-139 500.0 402 63.7
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 3.2e-139 499.2 406 62.8
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 1.6e-138 496.9 372 66.9
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 6.0e-138 495.0 407 62.2
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 4.3e-136 488.8 442 58.8
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 4.4e-133 478.8 409 60.4
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 1.3e-132 477.2 395 62.5
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 4.9e-132 475.3 334 70.4
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 1.9e-128 463.4 336 69.3
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 5.4e-123 445.3 370 63.2
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.1e-110 404.4 339 61.1
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 1.4e-110 404.1 417 50.6
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 8.4e-108 394.8 407 50.4
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 9.3e-107 391.3 408 49.5
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.1e-104 384.4 389 49.1
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 7.2e-99 365.2 313 61.7
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 2.3e-97 360.1 363 53.7
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 2.1e-90 337.0 411 48.7
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 5.3e-86 322.4 486 37.9
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.2e-77 294.7 396 41.9
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 1.7e-76 290.8 241 63.1
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 1.4e-65 254.6 224 57.1
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 8.6e-60 235.3 395 36.2
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 7.0e-54 215.7 158 65.2
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 1.6e-50 204.5 158 63.3
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 1.4e-38 164.9 393 31.3
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 8.6e-36 155.6 279 33.3
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 4.4e-32 143.3 107 62.6
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 2.9e-15 87.4 99 42.4
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 5.8e-08 63.2 380 22.9
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 1.3e-07 62.0 303 21.5
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 1.7e-07 61.6 320 24.7
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 2.2e-07 61.2 158 25.3
Lsat_1_v5_gn_7_78061 Lactuca sativa HOM05D000347 ORTHO05D001997 3.8e-07 60.5 132 28.0
PGR102G2938 Punica granatum HOM05D000836 ORTHO05D000709 3.8e-07 60.5 137 29.9
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 4.9e-07 60.1 303 23.1
Lj1g0006709 Lotus japonicus HOM05D000526 ORTHO05D000956 4.9e-07 60.1 233 25.3
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 6.4e-07 59.7 278 23.0
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 6.4e-07 59.7 294 22.8
QL05p037029 Quercus lobata HOM05D001771 ORTHO05D001876 8.4e-07 59.3 109 30.3
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 1.1e-06 58.9 114 25.4
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 1.1e-06 58.9 114 25.4
Manes.04G075900 Manihot esculenta HOM05D000347 ORTHO05D001997 1.1e-06 58.9 129 26.4
Lj3g0012644 Lotus japonicus HOM05D000526 ORTHO05D000956 1.9e-06 58.2 233 25.3
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 2.4e-06 57.8 140 29.3
PSO063G1093 Papaver somniferum HOM05D000464 ORTHO05D006292 2.4e-06 57.8 346 19.4
Dinv21879 Davidia involucrata HOM05D000526 ORTHO05D000956 3.2e-06 57.4 249 24.9
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 3.2e-06 57.4 114 26.3
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 3.2e-06 57.4 130 26.2
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 3.2e-06 57.4 318 19.5
CSS0037820 Camellia sinensis var. sinensis HOM05D000526 ORTHO05D000956 4.2e-06 57.0 231 25.1
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 4.2e-06 57.0 115 28.7
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 4.2e-06 57.0 270 23.0
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 4.2e-06 57.0 270 23.0
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 4.2e-06 57.0 114 25.4
PSO541G1463 Papaver somniferum HOM05D000684 ORTHO05D000688 9.3e-06 55.8 121 27.3
Sc25g0005650 Simmondsia chinensis HOM05D000997 ORTHO05D000828 9.3e-06 55.8 103 35.0


User provided reference genes

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