Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038155 Chenopodium quinoa HOM05D003327 ORTHO05D018410 2.3e-63 245.4 121 100.0
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 2.2e-45 185.7 120 75.0
Ah.08g216420 Amaranthus hybridus HOM05D003327 ORTHO05D004535 2.1e-40 169.1 122 68.9
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 2.5e-33 145.6 120 60.0
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 8.0e-32 140.6 121 58.7
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 8.9e-31 137.1 121 56.2
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 1.2e-30 136.7 121 57.9
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 3.2e-28 128.6 121 57.0
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 4.1e-28 128.3 122 53.3
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 5.4e-28 127.9 120 54.2
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 9.2e-28 127.1 122 52.5
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 1.6e-27 126.3 110 55.5
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 2.0e-27 125.9 121 54.5
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 2.0e-27 125.9 120 54.2
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 2.7e-27 125.6 122 54.9
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 2.7e-27 125.6 120 54.2
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 1.0e-26 123.6 121 54.5
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 3.0e-26 122.1 121 53.7
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 1.5e-25 119.8 121 52.9
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 1.9e-25 119.4 122 50.8
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 1.9e-25 119.4 123 52.0
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 2.5e-25 119.0 122 52.5
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 3.3e-25 118.6 123 52.8
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 3.3e-25 118.6 122 51.6
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 2.8e-24 115.5 128 49.2
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 2.8e-24 115.5 125 49.6
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 3.6e-24 115.2 126 47.6
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 4.7e-24 114.8 127 49.6
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 6.2e-24 114.4 120 51.7
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 6.2e-24 114.4 122 50.8
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 1.0e-23 113.6 122 49.2
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 1.0e-23 113.6 123 50.4
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 1.4e-23 113.2 107 56.1
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 1.4e-23 113.2 126 47.6
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 1.4e-23 113.2 122 49.2
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 2.3e-23 112.5 122 48.4
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 2.3e-23 112.5 123 49.6
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 4.0e-23 111.7 124 49.2
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 4.0e-23 111.7 129 48.8
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 6.8e-23 110.9 122 48.4
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 8.9e-23 110.5 122 46.7
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 1.2e-22 110.2 122 47.5
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.2e-22 110.2 122 47.5
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.2e-22 110.2 122 47.5
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.2e-22 110.2 122 47.5
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 4.4e-22 108.2 122 49.2
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 4.4e-22 108.2 126 46.8
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 9.8e-22 107.1 115 52.2
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 3.7e-21 105.1 121 49.6
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 3.7e-21 105.1 115 51.3
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 3.7e-21 105.1 121 47.9
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 4.9e-21 104.8 127 45.7
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 4.9e-21 104.8 51 92.2
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 4.9e-21 104.8 122 45.9
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 4.9e-21 104.8 127 41.7
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 8.3e-21 104.0 122 49.2
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 1.9e-20 102.8 122 45.1
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 2.4e-20 102.4 124 42.7
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 2.4e-20 102.4 122 50.0
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 4.1e-20 101.7 127 42.5
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 7.0e-20 100.9 127 40.9
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 7.0e-20 100.9 130 46.9
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 7.0e-20 100.9 130 46.9
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 9.2e-20 100.5 111 44.1
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 2.7e-19 99.0 125 44.8
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 2.7e-19 99.0 130 48.5
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 3.5e-19 98.6 128 42.2
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 1.0e-18 97.1 125 43.2
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 1.0e-18 97.1 123 42.3
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 1.7e-18 96.3 125 44.0
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 1.7e-18 96.3 126 44.4
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 1.7e-18 96.3 130 42.3
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 2.3e-18 95.9 129 44.2
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 2.3e-18 95.9 129 44.2
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 2.3e-18 95.9 129 41.9
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 3.0e-18 95.5 125 46.4
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 3.9e-18 95.1 127 44.9
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 3.9e-18 95.1 128 43.8
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 3.9e-18 95.1 130 43.1
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 5.0e-18 94.7 125 46.4
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 1.1e-17 93.6 123 45.5
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 1.1e-17 93.6 124 44.4
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 1.5e-17 93.2 127 43.3
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 1.5e-17 93.2 138 42.8
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 1.9e-17 92.8 130 43.1
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 1.9e-17 92.8 130 43.1
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 2.5e-17 92.4 134 42.5
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 2.5e-17 92.4 121 45.5
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 3.3e-17 92.0 118 42.4
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 2.1e-16 89.4 130 42.3
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 2.1e-16 89.4 114 40.4
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 1.8e-15 86.3 122 40.2
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 1.8e-15 86.3 122 40.2
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 1.8e-15 86.3 122 40.2
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 1.5e-14 83.2 139 34.5
Lalb_Chr24g0399881 Lupinus albus HOM05D003327 ORTHO05D018410 4.4e-14 81.6 85 47.1
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 1.3e-13 80.1 122 36.9
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 1.3e-13 80.1 42 85.7
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 1.7e-13 79.7 122 36.9
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 1.7e-13 79.7 71 60.6
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 2.2e-13 79.3 42 85.7
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 2.2e-13 79.3 43 86.0
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 2.2e-13 79.3 42 85.7
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 2.9e-13 79.0 42 83.3
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 2.9e-13 79.0 42 83.3
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 2.9e-13 79.0 42 83.3
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 2.9e-13 79.0 42 83.3
Aqoxy3G02752 Aquilegia oxysepala HOM05D003327 ORTHO05D018410 1.4e-12 76.6 42 83.3
Aqoxy3G03782 Aquilegia oxysepala HOM05D003327 ORTHO05D018410 1.4e-12 76.6 42 83.3
Aqoxy7G02450 Aquilegia oxysepala HOM05D003327 ORTHO05D018410 1.4e-12 76.6 42 83.3
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 1.4e-12 76.6 42 81.0
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 1.9e-12 76.3 42 83.3
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 1.9e-12 76.3 42 78.6
Rhsim05G0038800 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.9e-12 76.3 42 81.0
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 4.1e-12 75.1 42 78.6
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 7.1e-12 74.3 42 78.6
Aqoxy1G02392 Aquilegia oxysepala HOM05D003327 ORTHO05D018410 1.2e-11 73.6 42 81.0
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 2.1e-11 72.8 42 76.2
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 3.5e-11 72.0 39 82.1
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 3.5e-11 72.0 42 78.6
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 4.6e-11 71.6 42 78.6
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 4.6e-11 71.6 34 91.2
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 6.0e-11 71.2 44 79.5
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 3.9e-10 68.6 42 73.8
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 8.6e-10 67.4 42 76.2
COL.COLO4_21266 Corchorus olitorius HOM05D003327 ORTHO05D018410 1.1e-09 67.0 58 56.9
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 1.1e-09 67.0 48 62.5
unitig_52.g17348 Utricularia gibba HOM05D003327 ORTHO05D018410 1.9e-09 66.2 39 74.4
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 1.9e-09 66.2 33 84.8
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 2.5e-09 65.9 32 87.5
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 4.3e-09 65.1 122 32.8
AT4G38590 Arabidopsis thaliana HOM05D000140 ORTHO05D000087 9.5e-09 63.9 76 43.4
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 1.6e-08 63.2 33 81.8
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 2.8e-08 62.4 80 43.8
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 3.6e-08 62.0 36 69.4
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 4.7e-08 61.6 33 81.8
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 6.2e-08 61.2 33 78.8
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 4.0e-07 58.5 28 89.3
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 2.6e-06 55.8 31 77.4
Dinv12916 Davidia involucrata HOM05D003327 ORTHO05D004535 3.4e-06 55.5 43 62.8


User provided reference genes

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