Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 7.7e-112 407.1 202 100.0
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 7.2e-110 400.6 202 98.0
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 2.6e-99 365.5 202 87.1
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 2.4e-97 359.0 197 85.8
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 9.7e-91 337.0 202 76.7
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 1.1e-89 333.6 202 74.8
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.4e-89 333.2 202 74.8
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 3.1e-89 332.0 202 76.2
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 1.0e-87 327.0 202 72.8
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.0e-87 327.0 198 75.8
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 1.3e-87 326.6 202 74.3
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 5.0e-87 324.7 202 74.3
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 6.5e-87 324.3 203 76.4
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 8.5e-87 323.9 202 74.8
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.1e-86 323.6 201 73.1
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.9e-86 322.8 202 72.8
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 2.5e-86 322.4 202 72.3
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 7.2e-86 320.9 202 72.3
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 2.7e-85 318.9 194 75.8
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.6e-85 318.5 194 75.3
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.6e-85 318.5 194 75.3
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 6.1e-85 317.8 201 70.1
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 8.0e-85 317.4 200 72.0
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.8e-84 316.2 202 71.3
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 3.0e-84 315.5 203 71.4
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 4.0e-84 315.1 202 70.3
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.0e-84 315.1 201 71.1
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 5.2e-84 314.7 202 71.3
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 6.8e-84 314.3 198 69.2
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.2e-83 313.5 202 72.8
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 2.0e-83 312.8 194 74.7
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.0e-83 312.8 194 72.2
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 3.4e-83 312.0 239 62.8
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 3.4e-83 312.0 239 62.8
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.3e-82 310.1 197 71.1
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.7e-82 309.7 203 70.9
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 2.2e-82 309.3 235 64.3
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 3.7e-82 308.5 202 68.8
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.8e-82 308.1 210 68.6
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 5.4e-81 304.7 203 68.5
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.0e-81 304.3 203 68.5
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.0e-81 304.3 203 68.5
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 9.1e-81 303.9 200 72.5
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 2.0e-80 302.8 203 68.0
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 1.7e-79 299.7 217 66.4
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 3.8e-79 298.5 197 69.0
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.0e-79 298.1 202 68.8
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 5.0e-79 298.1 202 66.8
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 6.6e-79 297.7 203 70.4
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 8.6e-79 297.4 194 69.1
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.9e-78 296.2 202 66.8
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 2.5e-78 295.8 194 70.6
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 2.5e-78 295.8 203 68.5
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 5.5e-78 294.7 201 68.7
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 7.2e-78 294.3 200 67.5
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 1.6e-77 293.1 201 67.2
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 4.7e-77 291.6 202 65.3
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 8.0e-77 290.8 202 64.9
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.8e-76 289.7 197 67.0
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.8e-76 289.7 202 65.8
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 3.0e-76 288.9 197 66.0
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 6.8e-76 287.7 244 57.0
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.2e-75 287.0 197 66.0
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 2.6e-75 285.8 193 65.8
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 7.5e-75 284.3 197 65.5
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 7.5e-75 284.3 197 66.0
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 9.8e-75 283.9 194 66.0
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 2.2e-74 282.7 231 60.6
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 4.9e-74 281.6 194 66.5
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 6.3e-74 281.2 194 66.0
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 6.3e-74 281.2 197 64.5
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.4e-73 280.0 194 66.0
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.4e-73 280.0 194 66.0
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 7.0e-73 277.7 192 65.6
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 9.2e-73 277.3 202 64.9
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 1.6e-72 276.6 196 64.8
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 2.0e-72 276.2 194 64.9
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 2.0e-72 276.2 194 64.4
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 2.0e-72 276.2 194 64.9
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 2.0e-72 276.2 194 64.4
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.0e-72 276.2 170 75.3
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 3.5e-72 275.4 194 64.9
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.5e-72 275.0 200 61.5
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 1.3e-71 273.5 194 64.4
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.3e-71 273.5 197 61.9
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 1.3e-71 273.5 196 63.3
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.7e-71 273.1 194 61.3
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 1.7e-71 273.1 194 61.3
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.7e-71 273.1 194 61.3
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 1.7e-71 273.1 196 63.8
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 5.0e-71 271.6 222 59.9
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 1.5e-70 270.0 170 75.3
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 9.5e-70 267.3 181 66.3
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.6e-69 266.5 202 58.4
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.1e-69 264.6 168 75.6
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.1e-69 264.6 168 75.6
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 8.0e-69 264.2 194 60.8
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.8e-68 263.1 196 63.8
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.1e-68 262.3 194 58.8
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 6.8e-68 261.2 166 72.9
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.5e-67 260.0 171 71.9
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 3.4e-67 258.8 181 65.7
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 6.4e-66 254.6 194 58.2
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.4e-65 253.4 202 63.9
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.7e-64 249.2 186 65.1
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 4.6e-64 248.4 197 60.4
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 6.0e-64 248.1 189 58.2
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.0e-63 247.3 192 57.3
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-62 243.0 194 56.2
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 4.3e-62 241.9 159 67.9
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.8e-61 239.2 194 55.2
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 1.1e-60 237.3 204 53.4
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 3.4e-59 232.3 197 53.3
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.1e-57 227.3 193 49.2
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 7.8e-56 221.1 169 60.4
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 9.5e-54 214.2 159 60.4
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.2e-53 213.8 197 50.8
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 2.3e-52 209.5 190 53.7
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 4.0e-52 208.8 192 47.9
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.0e-52 208.8 192 50.5
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.8e-51 204.9 162 55.6
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.7e-50 203.4 177 56.5
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 4.9e-50 201.8 171 54.4
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.9e-49 199.9 190 44.2
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.4e-49 198.4 120 73.3
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.4e-49 198.4 198 48.0
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 7.1e-49 198.0 191 46.1
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.7e-48 196.1 161 55.3
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 2.3e-47 193.0 127 70.9
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 4.3e-46 188.7 190 48.9
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.6e-46 188.3 163 54.0
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 9.6e-46 187.6 151 55.6
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 2.1e-45 186.4 145 58.6
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 2.1e-45 186.4 120 67.5
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 2.0e-43 179.9 188 42.6
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 4.9e-42 175.3 121 63.6
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.4e-41 172.9 131 59.5
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 2.7e-40 169.5 128 67.2
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.7e-39 166.8 196 35.7
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.1e-39 165.2 185 43.2
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.5e-38 163.7 123 61.0
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.5e-38 162.9 133 57.9
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 7.3e-38 161.4 172 46.5
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-35 152.5 135 51.1
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-35 152.5 120 55.0
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.6e-35 151.4 117 59.0
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.5e-30 137.1 102 60.8
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 3.9e-23 112.5 81 66.7
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 2.1e-21 106.7 90 56.7
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 2.1e-21 106.7 81 58.0
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.1e-20 102.8 83 62.7
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 2.2e-18 96.7 132 39.4
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.3e-13 80.9 66 54.5
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.9e-12 75.1 106 38.7
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 1.2e-11 74.3 162 25.3
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 2.2e-10 70.1 97 37.1
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.0e-10 68.9 120 33.3
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 1.2e-08 64.3 54 63.0
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 1.2e-08 64.3 54 63.0
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 2.1e-08 63.5 44 72.7
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 6.7e-07 58.5 31 74.2


User provided reference genes

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