Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 0.0e+00 1272.3 644 100.0
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 6.6e-266 920.6 646 76.5
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 1.3e-213 746.9 649 63.2
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 4.2e-188 662.1 675 52.9
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 1.4e-186 657.1 678 52.7
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 2.6e-185 652.9 664 53.3
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 2.2e-184 649.8 669 53.2
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 6.3e-184 648.3 647 53.3
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 1.1e-183 647.5 668 52.7
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 2.4e-183 646.4 676 52.2
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 2.4e-183 646.4 647 53.2
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 3.1e-183 646.0 674 51.6
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 4.1e-183 645.6 671 53.2
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 2.0e-182 643.3 658 52.3
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 5.9e-182 641.7 676 51.0
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 1.3e-181 640.6 683 51.8
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 5.0e-181 638.6 652 53.4
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 5.0e-181 638.6 648 54.3
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 6.5e-181 638.3 692 51.0
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 5.5e-180 635.2 667 52.5
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 4.7e-179 632.1 652 51.5
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.8e-178 630.2 656 51.7
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 6.7e-178 628.2 660 51.1
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 1.2e-177 627.5 654 51.4
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 2.6e-177 626.3 663 52.0
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 3.3e-177 625.9 654 52.1
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 4.4e-177 625.5 645 52.1
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 2.8e-176 622.9 714 49.2
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 6.3e-176 621.7 653 50.8
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 2.4e-175 619.8 695 48.2
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.1e-175 619.0 668 51.2
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 1.2e-174 617.5 657 51.8
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 2.0e-174 616.7 668 51.0
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 7.7e-174 614.8 654 51.5
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 5.0e-173 612.1 669 50.2
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 6.5e-173 611.7 649 51.6
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.1e-172 610.9 659 50.4
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 1.5e-172 610.5 677 50.2
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 7.2e-172 608.2 685 49.2
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 9.4e-172 607.8 675 50.8
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.6e-171 605.9 689 49.9
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 8.0e-171 604.7 664 51.2
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 8.0e-171 604.7 679 51.3
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 4.0e-170 602.4 686 49.3
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 3.4e-169 599.4 676 49.7
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 4.4e-169 599.0 672 49.4
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 4.4e-169 599.0 669 50.4
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 4.4e-169 599.0 587 54.3
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 4.4e-169 599.0 682 49.9
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.7e-168 595.9 720 47.5
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 1.4e-167 594.0 669 49.5
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 1.6e-166 590.5 659 49.8
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 2.0e-166 590.1 649 50.5
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 2.7e-166 589.7 651 50.4
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 5.9e-166 588.6 636 50.9
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 7.7e-166 588.2 668 49.0
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.3e-164 582.8 666 48.8
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 9.5e-164 581.3 651 49.9
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 9.5e-164 581.3 651 49.9
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 9.5e-164 581.3 651 49.9
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 6.1e-163 578.6 649 51.3
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 1.0e-162 577.8 681 49.0
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 1.4e-162 577.4 836 42.3
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 2.0e-161 573.5 680 47.8
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 8.3e-160 568.2 663 49.5
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 1.1e-159 567.8 649 49.9
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 5.4e-159 565.5 666 47.4
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 1.6e-158 563.9 667 48.1
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 3.5e-158 562.8 613 49.9
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 1.0e-154 551.2 733 43.8
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 3.1e-154 549.7 590 52.0
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 4.0e-154 549.3 611 50.1
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 5.8e-153 545.4 605 50.7
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 4.1e-151 539.3 651 46.7
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 3.1e-146 523.1 656 46.0
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 2.7e-142 510.0 568 51.1
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 2.5e-140 503.4 645 45.0
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 2.3e-138 496.9 642 45.0
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 2.0e-137 493.8 644 44.9
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 9.9e-137 491.5 602 47.7
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 1.9e-135 487.3 645 44.0
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 5.4e-135 485.7 642 44.9
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 1.5e-132 477.6 675 42.2
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 1.6e-131 474.2 521 52.4
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 8.1e-131 471.9 565 49.6
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 8.1e-131 471.9 646 43.5
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 2.0e-129 467.2 633 45.7
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 2.6e-129 466.8 651 43.3
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 1.9e-124 450.7 564 48.0
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 1.7e-120 437.6 478 51.0
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 5.4e-119 432.6 481 50.3
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 2.8e-115 420.2 670 40.3
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 5.3e-114 416.0 625 40.2
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 2.6e-113 413.7 569 44.6
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 8.4e-112 408.7 661 39.6
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 3.0e-109 400.2 521 46.4
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 4.8e-107 392.9 648 37.8
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 6.2e-99 365.9 630 39.7
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 2.9e-96 357.1 532 41.4
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 3.5e-94 350.1 451 44.6
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 1.1e-87 328.6 747 32.8
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 6.7e-85 319.3 446 42.8
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.8e-82 311.2 225 67.1
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 8.5e-80 302.4 494 40.5
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 7.4e-76 289.3 221 65.2
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 8.2e-75 285.8 174 82.2
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 1.5e-73 281.6 909 27.4
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 6.5e-72 276.2 276 54.3
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 2.0e-68 264.6 416 40.1
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 9.7e-68 262.3 539 35.1
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.4e-60 236.9 265 50.2
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 3.6e-54 217.2 341 39.9
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 7.5e-52 209.5 170 59.4
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 9.1e-50 202.6 164 61.0
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 1.3e-48 198.7 167 58.7
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 9.5e-47 192.6 305 40.3
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 9.8e-44 182.6 180 54.4
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 8.3e-43 179.5 135 65.2
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 1.0e-40 172.6 343 34.7
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.5e-39 168.7 158 55.1
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 3.3e-39 167.5 159 56.6
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 2.2e-35 154.8 166 48.8
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.9e-35 154.5 143 55.2
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 1.9e-34 151.8 642 27.6
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 2.0e-33 148.3 175 48.0
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 5.0e-32 143.7 183 43.2
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 3.6e-30 137.5 143 46.9
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 5.2e-29 133.7 256 35.2
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.5e-28 132.1 101 69.3
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 7.1e-26 123.2 158 43.0
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 1.1e-23 115.9 106 55.7
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 2.8e-22 111.3 122 46.7
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 8.9e-21 106.3 303 30.0
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.4e-18 98.2 90 60.0
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 1.2e-17 95.9 181 35.9
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 4.6e-17 94.0 54 79.6
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 1.0e-16 92.8 52 86.5
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 1.1e-15 89.4 144 36.8
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 9.6e-15 86.3 54 72.2
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 1.4e-13 82.4 93 43.0
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 5.2e-13 80.5 143 38.5
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 5.8e-12 77.0 264 29.5
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 6.0e-09 67.0 135 34.8


User provided reference genes

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