Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1676.0 834 100.0
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1645.2 834 98.1
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1569.3 845 91.8
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1473.8 946 79.1
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1465.3 842 84.4
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1400.6 842 81.4
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1388.2 838 81.5
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1386.3 842 80.0
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1382.9 845 80.8
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1378.2 840 80.1
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1375.5 840 80.0
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1370.9 840 80.2
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1365.1 845 79.4
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1364.4 841 79.7
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1359.4 841 79.4
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1359.0 868 77.2
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1358.6 848 79.5
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1356.7 848 79.2
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1355.1 904 74.4
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1353.2 848 79.1
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1352.4 840 78.5
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1347.4 849 78.7
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1344.7 848 77.7
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1344.3 847 77.9
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1344.3 865 77.3
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1343.9 845 78.1
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1343.9 845 77.6
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1343.9 841 79.0
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1343.2 852 78.2
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1342.4 842 77.7
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1341.3 847 77.7
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1341.3 847 77.7
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1339.3 920 73.4
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1338.2 841 78.2
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1336.6 848 77.5
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1333.9 842 77.2
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1333.5 841 77.9
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1333.2 848 77.2
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1330.9 841 78.0
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1330.5 845 77.5
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1328.5 847 77.2
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1328.2 848 77.4
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1327.4 841 77.6
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1326.2 861 75.4
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1323.9 845 77.2
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1323.5 844 80.6
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1321.2 848 77.5
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1320.8 850 76.4
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1318.5 845 76.2
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1317.8 893 73.0
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1315.4 845 76.7
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1313.9 838 76.5
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1313.5 846 76.6
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1313.1 838 77.1
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1312.0 861 75.0
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1311.6 838 76.4
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1309.3 849 76.9
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1308.1 861 75.1
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1308.1 842 76.1
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1307.0 846 76.8
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1305.8 848 76.3
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1303.9 861 74.9
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1303.5 857 75.0
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1303.1 860 76.3
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1300.0 853 75.7
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1297.3 843 75.3
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1297.3 853 76.7
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1293.9 846 75.3
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1292.7 920 70.2
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1284.2 920 69.8
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1283.1 868 74.1
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1279.2 906 71.3
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1278.5 857 73.7
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1256.1 788 77.5
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1255.0 838 74.0
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1248.0 858 72.0
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1244.6 858 71.7
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1244.6 858 71.8
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1243.8 858 71.7
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1242.6 858 71.7
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1242.6 858 71.7
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1242.3 858 71.7
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1242.3 858 71.7
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1242.3 858 71.7
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1241.9 839 71.3
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1239.6 858 71.8
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1238.8 857 72.0
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1218.8 765 79.2
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1211.8 854 69.2
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1144.8 729 77.0
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1099.0 840 66.9
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 5.7e-312 1074.3 841 62.1
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 5.6e-310 1067.4 841 61.1
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 1.1e-300 1036.6 880 61.8
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 4.2e-289 998.0 854 62.9
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.6e-288 996.1 840 57.5
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 2.6e-283 978.8 1144 50.2
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 7.9e-280 967.2 852 62.8
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 7.4e-270 934.1 789 61.7
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 2.9e-266 922.2 625 72.0
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 3.8e-266 921.8 686 69.1
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 8.3e-261 904.0 729 65.4
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 2.5e-233 812.8 605 66.6
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 2.5e-209 733.0 675 57.6
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 9.6e-209 731.1 475 74.9
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 9.0e-199 698.0 432 80.6
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.8e-194 683.7 460 75.7
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 1.5e-190 670.6 393 79.6
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.3e-184 651.0 606 58.4
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 1.3e-173 614.4 843 41.3
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 3.2e-172 609.8 359 80.5
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.7e-168 596.3 362 82.6
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 8.8e-162 575.1 337 84.0
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 4.7e-155 552.7 859 37.5
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 5.0e-133 479.6 829 35.2
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.9e-116 424.5 434 52.8
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.3e-116 423.3 331 57.4
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 3.5e-110 403.7 1000 29.5
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 6.2e-107 392.9 367 58.6
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 1.1e-106 392.1 593 41.8
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.1e-102 377.9 263 70.0
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 6.8e-98 362.8 328 54.3
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 9.9e-89 332.4 241 69.7
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 5.3e-82 310.1 165 90.9
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 7.4e-76 289.7 317 48.3
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.5e-73 282.0 156 80.1
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 4.8e-67 260.4 218 60.6
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 3.1e-42 177.9 97 84.5
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 1.0e-37 162.9 113 69.0
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 8.8e-37 159.8 101 75.2
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.3e-35 153.7 119 63.0
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 2.5e-31 141.7 85 78.8
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-29 136.0 98 68.4
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.4e-29 136.0 87 73.6
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 4.0e-29 134.4 94 68.1
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 9.8e-28 129.8 94 66.0
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 2.2e-27 128.6 99 66.7
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 4.8e-27 127.5 67 86.6
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 1.4e-26 125.9 169 46.7
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.4e-26 125.9 176 46.0
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 9.1e-26 123.2 91 63.7
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 1.3e-24 119.4 96 63.5
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 2.2e-24 118.6 80 67.5
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 3.8e-24 117.9 108 57.4
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.5e-23 115.2 125 56.8
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 3.2e-23 114.8 100 61.0
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.6e-22 112.5 91 64.8
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-21 109.4 68 72.1
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 1.8e-21 109.0 96 60.4
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 9.8e-20 103.2 64 71.9
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.4e-18 98.6 67 70.1
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 4.5e-17 94.4 82 62.2
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 1.0e-16 93.2 115 45.2
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 2.9e-16 91.7 52 78.8
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 2.9e-16 91.7 52 78.8
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 4.4e-12 77.8 50 78.0
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 1.3e-11 76.3 86 47.7
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 1.3e-11 76.3 86 47.7
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 6.4e-11 73.9 48 75.0
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.2e-09 69.7 37 86.5
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 1.6e-09 69.3 87 49.4
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 5.0e-08 64.3 39 79.5
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 4.3e-07 61.2 41 73.2
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.5e-07 60.1 34 82.4
Rhsim07G0116000 Rhododendron simsii HOM05D000382 ORTHO05D037450 2.8e-06 58.5 148 35.8


User provided reference genes

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