Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 3.5e-126 454.9 223 100.0
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 3.6e-110 401.7 223 85.7
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.4e-109 399.8 202 98.0
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 3.3e-108 395.2 214 86.0
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 5.7e-100 367.9 223 75.3
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 9.7e-100 367.1 223 73.5
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.7e-99 366.3 223 74.4
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 8.2e-99 364.0 223 75.3
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 7.0e-98 360.9 223 71.7
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 7.0e-98 360.9 219 74.9
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.2e-97 360.1 223 74.0
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.6e-97 359.8 223 72.6
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.0e-96 357.1 222 72.1
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.7e-96 356.3 223 71.7
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 3.8e-96 355.1 224 74.1
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 6.5e-96 354.4 223 71.3
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 1.1e-95 353.6 219 73.5
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.5e-95 352.4 215 74.4
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.5e-95 352.4 215 74.4
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 4.2e-95 351.7 215 74.4
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.2e-95 350.9 222 70.7
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.6e-94 349.7 219 69.4
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.1e-94 349.4 223 70.9
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 2.7e-94 349.0 223 70.0
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 3.6e-94 348.6 224 70.5
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 4.7e-94 348.2 260 63.1
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 4.7e-94 348.2 260 63.1
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 8.0e-94 347.4 223 70.0
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 8.0e-94 347.4 215 71.6
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.4e-93 346.7 223 71.7
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 1.8e-93 346.3 215 73.5
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.1e-92 343.6 224 70.5
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.5e-92 343.2 217 70.0
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 9.7e-92 340.5 224 68.8
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.3e-91 340.1 223 68.6
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.2e-91 339.3 223 69.5
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.8e-91 339.0 224 68.3
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 6.3e-91 337.8 223 69.5
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 8.2e-91 337.4 224 67.9
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.4e-90 336.7 251 64.9
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.8e-90 336.3 218 69.3
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.8e-90 336.3 218 68.8
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 7.0e-90 334.3 238 66.4
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.0e-90 334.3 225 68.4
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.2e-89 333.6 218 69.7
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 1.6e-89 333.2 223 66.8
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 5.9e-89 331.3 223 66.8
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 5.9e-89 331.3 223 70.0
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 1.0e-88 330.5 224 67.9
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 5.0e-88 328.2 218 66.1
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 8.5e-88 327.4 219 66.2
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 1.9e-87 326.2 215 69.8
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.5e-87 325.9 223 65.0
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 3.2e-87 325.5 224 67.0
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 9.4e-87 323.9 219 70.3
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.2e-86 323.6 223 65.5
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.1e-86 322.8 218 67.4
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.4e-85 320.1 215 66.0
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 1.4e-85 320.1 218 67.0
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.4e-85 320.1 252 60.7
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.8e-85 319.7 218 66.1
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 3.0e-85 318.9 215 65.6
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 6.8e-85 317.8 218 66.1
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 6.8e-85 317.8 218 65.6
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 2.6e-84 315.8 218 65.6
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 3.4e-84 315.5 265 57.0
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.4e-84 315.5 215 67.9
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 5.7e-84 314.7 215 64.7
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 7.5e-84 314.3 218 64.2
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.7e-83 313.2 215 65.1
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 2.2e-83 312.8 215 66.5
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 4.8e-83 311.6 217 65.0
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 6.3e-83 311.2 217 65.4
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.3e-83 311.2 221 62.4
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 8.3e-83 310.8 215 66.0
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 8.3e-83 310.8 215 65.6
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 8.3e-83 310.8 215 66.0
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 7.0e-82 307.8 218 62.8
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 2.7e-81 305.8 215 63.7
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.7e-81 305.8 243 60.5
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 2.7e-81 305.8 215 63.7
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 5.9e-81 304.7 217 63.1
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 7.7e-81 304.3 215 63.3
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 3.8e-80 302.0 215 63.3
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 5.0e-80 301.6 210 65.2
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.5e-80 301.2 215 60.5
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 6.5e-80 301.2 215 60.5
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.5e-80 301.2 215 60.5
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 2.5e-79 299.3 210 65.2
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 2.5e-79 299.3 215 62.8
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 4.2e-79 298.5 217 64.1
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 5.5e-79 298.1 223 58.7
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 4.0e-77 292.0 215 59.5
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 6.8e-77 291.2 215 58.6
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 2.6e-76 289.3 202 63.4
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.4e-76 288.9 215 59.1
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.8e-75 285.8 218 61.9
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.4e-74 282.7 218 61.5
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.7e-73 277.7 215 57.2
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.7e-72 276.6 180 67.8
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 8.6e-72 274.2 215 55.8
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 1.6e-70 270.0 225 53.8
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.1e-70 269.6 170 72.9
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-70 269.6 217 55.3
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 1.8e-69 266.5 170 74.1
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.5e-68 263.5 168 75.0
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.5e-68 263.5 168 75.0
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 2.0e-68 263.1 218 53.2
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.4e-66 256.9 171 70.2
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 7.0e-66 254.6 225 57.8
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 7.0e-66 254.6 166 71.1
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 3.5e-65 252.3 218 53.7
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.9e-64 248.8 189 58.2
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 6.6e-64 248.1 214 48.1
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-62 243.0 215 51.6
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.8e-62 242.7 186 63.4
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.1e-61 239.2 185 56.2
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.2e-58 229.2 221 48.4
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.0e-58 228.0 214 50.0
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.6e-57 226.9 141 71.6
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 2.0e-57 226.5 210 47.6
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 3.5e-57 225.7 213 44.1
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 2.3e-56 223.0 141 68.8
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 5.0e-56 221.9 169 60.4
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 1.1e-55 220.7 211 50.7
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 8.9e-53 211.1 159 59.1
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.2e-52 210.7 169 54.4
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 4.4e-52 208.8 142 64.8
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 6.4e-51 204.9 211 47.4
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 2.4e-50 203.0 177 56.5
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 3.2e-50 202.6 171 54.4
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 4.1e-50 202.2 216 41.2
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 5.1e-48 195.3 191 46.1
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 2.5e-47 193.0 127 70.9
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.3e-47 192.2 203 44.3
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 4.7e-46 188.7 219 36.1
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 1.8e-45 186.8 145 58.6
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.0e-45 185.7 163 53.4
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.4e-44 182.2 143 55.2
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.7e-41 172.9 131 59.5
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.7e-40 170.2 128 67.2
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.6e-38 163.7 123 61.0
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-38 163.3 133 57.9
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.8e-37 160.2 166 46.4
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.8e-35 152.5 135 51.1
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.4e-35 151.4 117 59.0
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.6e-30 137.1 102 60.8
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 6.2e-22 108.6 76 64.5
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 2.4e-21 106.7 90 56.7
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 2.4e-21 106.7 81 58.0
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.4e-20 102.8 83 62.7
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 9.9e-20 101.3 52 76.9
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.9e-20 101.3 143 37.8
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 2.1e-17 93.6 132 37.9
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 1.4e-13 80.9 52 57.7
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.2e-12 77.8 66 53.0
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 5.8e-12 75.5 162 25.9
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.6e-12 75.1 106 38.7
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 1.4e-10 70.9 102 36.3
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 4.6e-09 65.9 54 64.8
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 4.6e-09 65.9 54 64.8
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 7.9e-09 65.1 53 66.0


User provided reference genes

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