Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1322.0 691 100.0
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1257.7 690 94.2
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1248.8 687 95.3
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1179.1 687 88.5
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1156.7 690 85.5
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 690 84.9
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 686 85.6
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 690 84.8
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1144.8 690 84.9
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 689 84.2
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1139.4 686 84.4
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1138.6 689 84.0
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1138.3 690 84.2
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1137.1 688 84.4
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 686 83.8
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 690 83.6
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 686 84.3
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1135.6 686 84.1
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1135.2 686 84.3
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1135.2 686 84.1
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 691 83.5
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 685 83.4
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1131.3 591 99.8
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1127.5 686 83.2
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1126.7 690 83.3
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1125.5 690 83.0
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1123.6 692 83.1
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1123.6 690 82.5
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1123.2 690 82.5
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1122.5 685 82.8
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 689 82.9
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 685 82.5
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1121.7 690 82.0
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 685 82.5
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1120.5 690 81.9
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 690 82.0
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1119.0 690 82.2
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1118.6 707 81.8
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1118.2 686 83.1
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1118.2 688 83.9
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 691 82.5
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 691 82.5
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 691 82.5
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 689 82.6
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 686 84.0
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1114.4 684 82.6
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1113.2 684 82.2
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 690 82.8
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1111.7 685 82.9
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1111.3 690 81.3
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1110.5 692 81.9
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1107.0 697 81.9
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1106.7 691 81.9
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1105.9 691 81.9
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1105.1 688 82.4
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1105.1 684 81.3
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1104.7 684 81.1
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1104.7 690 82.8
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1104.4 684 81.3
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1102.4 684 80.8
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1102.0 684 81.0
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1101.3 714 79.8
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1100.9 687 81.8
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1099.7 684 80.8
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1099.7 684 80.8
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1099.7 706 79.5
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1099.0 684 80.7
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1098.6 684 80.7
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1098.6 713 79.0
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 675 83.3
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1096.6 685 80.9
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1095.9 684 80.8
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1093.6 696 81.6
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1093.2 691 80.6
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1092.8 691 80.6
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1092.0 690 80.9
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1092.0 686 80.0
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1089.3 692 81.1
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1086.2 686 81.9
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1085.1 668 82.9
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1084.7 732 77.6
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1081.2 686 80.0
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1080.9 686 80.6
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1080.5 684 80.6
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1078.9 686 80.3
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1078.2 766 74.2
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1077.0 684 79.5
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 4.3e-311 1070.8 708 78.0
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.4e-309 1065.8 691 78.0
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 1.8e-309 1065.4 692 79.5
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 4.4e-308 1060.8 692 77.9
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 2.4e-306 1055.0 660 80.2
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.1e-306 1054.3 701 77.7
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.2e-304 1048.5 732 76.2
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 1.5e-303 1045.8 726 74.8
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.8e-299 1031.6 666 79.6
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 7.0e-298 1026.9 684 76.0
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.3e-296 1022.7 686 75.8
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 5.7e-292 1007.3 707 73.8
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.1e-286 988.8 736 69.2
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.8e-277 959.1 554 89.9
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 6.4e-275 950.7 689 69.4
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 6.4e-275 950.7 689 69.4
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 3.2e-274 948.3 614 78.8
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.3e-272 943.0 631 78.3
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.5e-271 939.5 682 68.2
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 8.3e-267 923.7 693 67.1
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.3e-263 911.8 584 78.9
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 8.9e-261 903.7 691 66.0
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.2e-252 876.7 566 77.2
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 4.6e-249 864.8 683 68.5
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 3.0e-248 862.1 589 75.9
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 6.4e-243 844.3 495 86.3
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 9.3e-242 840.5 675 68.3
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.3e-231 805.1 481 85.7
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 4.5e-220 768.5 681 57.4
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 1.1e-207 727.2 675 55.0
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.3e-195 687.2 423 79.9
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.4e-191 672.2 448 79.9
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.5e-151 540.8 328 79.3
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 2.4e-149 533.5 712 43.1
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.0e-139 501.5 762 37.8
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 6.9e-128 462.2 280 82.5
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 3.1e-120 436.8 359 63.2
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 5.8e-119 432.6 270 78.5
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 1.9e-117 427.6 269 79.6
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 2.6e-111 407.1 747 35.6
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 7.9e-108 395.6 233 82.8
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 6.3e-105 386.0 237 80.6
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.1e-104 383.6 261 78.9
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 5.3e-104 382.9 253 75.1
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.7e-97 360.1 241 79.7
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.4e-75 288.5 182 75.3
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.3e-73 282.0 193 79.8
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.7e-73 281.6 215 69.3
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.1e-69 268.9 148 86.5
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.4e-64 251.1 195 66.2
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.0e-58 231.5 192 69.3
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 5.7e-58 229.9 155 66.5
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 2.5e-53 214.5 170 64.7
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 6.8e-51 206.5 164 66.5
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 9.8e-50 202.6 114 93.9
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 2.9e-49 201.1 214 54.7
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 4.9e-49 200.3 180 65.0
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 2.3e-46 191.4 488 27.9
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.5e-45 188.7 122 80.3
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.9e-41 174.5 111 85.6
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 7.8e-39 166.4 104 79.8
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.1e-36 158.3 111 73.0
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 4.7e-28 130.6 100 69.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.0e-26 125.2 151 50.3
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 5.8e-26 123.6 100 66.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 5.8e-26 123.6 100 66.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.7e-22 112.1 88 64.8
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 3.9e-22 110.9 69 76.8
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 3.3e-21 107.8 63 81.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 9.6e-21 106.3 73 74.0
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.3e-20 105.9 57 87.7
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 4.8e-20 104.0 65 83.1
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.8e-19 102.1 70 74.3
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 3.1e-19 101.3 77 67.5
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 6.9e-19 100.1 59 81.4
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.2e-18 99.4 103 56.3
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.6e-15 89.0 93 53.8
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 3.6e-12 77.8 78 52.6
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 6.9e-11 73.6 72 56.9
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.7e-07 61.6 39 74.4
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.0e-06 59.7 40 75.0
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.8e-06 58.9 43 65.1


User provided reference genes

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