Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1342.8 650 100.0
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1316.2 650 98.0
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1268.4 650 94.2
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1258.4 650 92.8
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1246.9 649 92.0
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1232.6 652 91.1
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1213.0 648 89.5
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1202.6 650 89.1
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1197.6 649 87.4
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1196.0 650 88.6
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1195.3 650 87.1
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1192.9 649 86.9
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1192.6 650 87.7
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1192.2 646 88.7
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1191.4 650 87.4
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1190.6 650 87.2
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1190.3 649 87.2
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1189.1 652 87.7
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1188.7 644 87.3
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1187.9 648 87.8
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1187.2 651 88.3
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1185.2 650 87.1
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1183.3 646 87.2
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 646 87.5
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1182.5 651 87.7
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1182.5 647 87.3
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 648 87.5
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1179.9 653 86.4
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1179.9 646 87.2
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1179.1 646 87.2
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1178.7 652 86.2
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1178.7 650 87.1
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1178.3 652 86.7
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1177.9 646 87.0
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 648 87.5
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 644 87.0
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 650 86.2
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 650 86.5
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1175.2 649 86.6
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1174.5 653 85.8
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1173.7 653 85.9
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1173.7 649 86.1
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1173.7 650 86.3
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1173.3 651 87.4
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1172.9 650 86.3
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 646 86.5
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1172.1 649 85.8
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 646 86.4
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1171.0 653 85.5
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1170.2 649 85.5
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1169.8 648 86.3
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 648 86.7
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1167.9 649 86.7
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1166.8 642 87.5
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1166.0 649 85.2
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1166.0 648 86.0
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1165.2 649 85.8
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1165.2 648 85.6
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1165.2 648 85.6
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 646 86.1
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 650 86.5
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1160.6 646 85.1
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 649 85.5
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1159.4 647 86.7
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1158.7 646 87.0
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1158.7 650 85.2
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 643 86.3
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 648 85.5
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 648 85.2
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1154.4 649 84.9
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1154.0 644 86.0
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 653 86.2
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1153.3 644 86.0
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1152.9 624 88.8
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1152.9 644 86.0
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1152.5 652 84.5
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1151.7 644 85.2
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1151.3 649 84.6
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1151.3 646 85.6
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1151.0 646 85.6
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1151.0 644 85.2
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1147.9 649 85.1
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 650 84.3
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1146.0 647 85.0
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1146.0 647 85.0
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1144.4 649 84.6
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1142.1 637 86.2
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1141.3 647 84.9
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1140.6 647 84.5
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1140.6 648 85.3
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1139.8 647 84.7
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1135.6 644 84.6
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1135.2 650 84.0
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1130.9 650 83.5
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1127.1 652 83.6
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1125.9 716 77.7
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1114.4 588 89.5
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1114.4 620 85.5
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1104.7 643 82.3
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1099.3 648 82.1
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1098.6 650 81.4
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1098.2 595 89.6
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1094.0 644 82.3
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 2.2e-309 1065.1 646 80.3
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 1.4e-308 1062.4 676 76.5
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 1.1e-305 1052.7 583 85.4
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 5.7e-302 1040.4 596 83.2
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 1.3e-301 1039.3 602 82.4
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 6.4e-301 1036.9 540 90.0
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 7.8e-299 1030.0 601 81.7
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 5.4e-292 1007.3 569 83.1
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 3.3e-289 998.0 554 84.3
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 3.6e-288 994.6 614 78.7
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 1.2e-251 873.2 474 86.9
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 3.8e-229 798.5 548 70.6
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 4.4e-201 705.3 396 85.9
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 2.7e-198 696.0 395 85.8
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 1.8e-191 673.3 585 58.6
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 1.8e-146 523.9 267 92.1
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.9e-127 460.7 557 48.1
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 1.8e-74 284.6 225 62.2
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 3.1e-69 267.3 125 96.0
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 5.8e-44 183.3 108 81.5
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.6e-41 175.3 152 57.9
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 7.8e-41 172.9 97 86.6
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 4.0e-37 160.6 150 58.0
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.2e-20 105.9 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.3e-19 102.4 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 1.3e-08 65.9 32 93.8


User provided reference genes

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