Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 2.8e-221 771.5 371 100.0
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 9.6e-185 650.2 352 90.6
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 1.0e-170 603.6 329 88.1
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 9.6e-169 597.0 309 91.3
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 2.6e-166 589.0 305 89.5
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 6.4e-165 584.3 305 87.2
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 3.5e-163 578.6 305 87.2
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 1.3e-162 576.6 305 85.6
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 3.9e-162 575.1 305 86.2
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 3.9e-162 575.1 305 86.2
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 6.7e-162 574.3 305 86.9
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.5e-161 572.4 305 85.6
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 3.3e-161 572.0 306 85.3
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 4.3e-161 571.6 305 84.9
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 4.3e-161 571.6 312 85.6
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 5.6e-161 571.2 304 85.9
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 1.6e-160 569.7 314 83.8
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 2.1e-160 569.3 314 83.8
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 2.8e-160 568.9 304 85.5
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 2.8e-160 568.9 306 84.0
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 2.8e-160 568.9 310 83.5
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 3.7e-160 568.5 305 85.9
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 3.7e-160 568.5 306 84.6
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 3.7e-160 568.5 306 84.6
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 8.1e-160 567.4 305 85.6
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.1e-159 567.0 305 85.2
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 1.4e-159 566.6 305 85.6
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 1.4e-159 566.6 306 84.6
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 1.4e-159 566.6 305 84.3
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 3.1e-159 565.5 312 84.0
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 4.0e-159 565.1 312 83.0
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.2e-158 563.5 307 84.7
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.2e-158 563.5 307 84.7
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 1.5e-158 563.1 304 84.5
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 1.5e-158 563.1 307 84.7
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 1.5e-158 563.1 306 84.3
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.0e-158 562.8 305 84.3
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 2.6e-158 562.4 305 83.6
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 3.4e-158 562.0 307 84.0
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 3.4e-158 562.0 306 84.0
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 4.5e-158 561.6 305 84.3
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 7.6e-158 560.8 305 83.9
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.0e-157 560.5 305 83.9
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 1.0e-157 560.5 315 81.6
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.3e-157 560.1 309 83.2
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 1.3e-157 560.1 305 83.6
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 1.7e-157 559.7 306 84.0
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 1.7e-157 559.7 305 84.9
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 2.2e-157 559.3 319 82.1
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 2.9e-157 558.9 303 84.8
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 6.5e-157 557.8 306 83.7
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 8.4e-157 557.4 306 84.0
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 3.2e-156 555.4 305 82.6
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 5.5e-156 554.7 306 83.3
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 9.3e-156 553.9 315 81.3
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 1.6e-155 553.1 305 83.3
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 2.7e-155 552.4 308 81.8
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 3.5e-155 552.0 305 83.3
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 1.8e-154 549.7 306 82.7
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 3.0e-154 548.9 306 82.4
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 8.7e-154 547.4 313 80.8
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 1.9e-153 546.2 287 86.1
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 2.8e-152 542.3 344 74.7
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.1e-151 540.4 306 81.0
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 3.4e-150 535.4 306 80.4
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 5.9e-150 534.6 306 82.0
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 2.9e-149 532.3 307 79.2
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 3.8e-149 531.9 305 82.0
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 1.4e-148 530.0 306 79.7
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 4.2e-148 528.5 306 80.1
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 6.1e-147 524.6 317 77.0
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 2.3e-146 522.7 322 75.2
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 2.3e-146 522.7 322 75.2
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 3.0e-146 522.3 329 73.9
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 8.7e-146 520.8 322 75.2
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 8.7e-146 520.8 322 75.2
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 8.7e-146 520.8 322 75.2
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 8.7e-146 520.8 322 75.2
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 1.1e-145 520.4 323 74.3
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 1.1e-145 520.4 326 74.2
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 1.9e-145 519.6 347 72.0
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 2.5e-145 519.2 322 74.5
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 5.7e-145 518.1 322 74.8
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 9.7e-145 517.3 322 74.8
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 9.7e-145 517.3 275 86.2
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 1.4e-143 513.5 305 78.4
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.4e-143 513.5 320 75.6
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 5.3e-143 511.5 327 73.1
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 9.0e-143 510.8 312 74.7
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 2.0e-142 509.6 280 83.6
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 7.7e-142 507.7 322 73.6
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.1e-140 503.8 307 76.2
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.4e-140 503.4 336 73.5
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.9e-140 503.1 306 76.1
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 7.2e-140 501.1 339 69.6
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 3.6e-139 498.8 322 73.3
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 3.9e-138 495.4 328 71.3
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 8.8e-138 494.2 322 72.7
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.1e-137 493.8 321 74.1
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 2.5e-137 492.7 273 81.7
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 7.7e-134 481.1 314 70.4
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.8e-130 469.9 270 80.7
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 1.5e-129 466.8 291 75.6
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.4e-127 460.3 307 69.1
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 2.4e-127 459.5 259 79.9
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 3.1e-127 459.1 304 70.4
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 2.6e-121 439.5 311 69.8
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 5.0e-117 425.2 326 62.6
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 1.9e-116 423.3 253 79.4
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 9.4e-116 421.0 324 61.7
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 3.4e-113 412.5 316 62.3
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 2.5e-108 396.4 224 80.4
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 3.2e-108 396.0 315 57.8
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 1.2e-102 377.5 210 83.8
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 3.8e-101 372.5 223 75.3
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 1.4e-98 364.0 224 74.6
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 5.2e-98 362.1 306 60.8
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 3.4e-97 359.4 192 83.9
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 9.8e-97 357.8 187 86.1
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 2.8e-91 339.7 199 78.4
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 4.4e-89 332.4 276 59.1
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 1.2e-86 324.3 192 76.0
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 1.1e-79 301.2 252 61.1
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 1.9e-79 300.4 252 64.3
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 1.3e-48 198.0 111 82.0
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 1.5e-44 184.5 129 70.5
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 3.7e-35 153.3 301 35.2
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 1.1e-28 131.7 259 33.6
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 1.1e-28 131.7 83 79.5
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 1.9e-28 131.0 76 76.3
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 6.9e-26 122.5 79 74.7
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 6.7e-21 105.9 210 33.8
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.3e-19 101.7 80 63.8
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 1.5e-17 94.7 52 80.8
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 5.9e-17 92.8 95 53.7
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 4.4e-12 76.6 41 90.2
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.6e-09 67.4 29 93.1
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 3.2e-07 60.5 29 86.2


User provided reference genes

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