Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 5.9e-148 528.5 526 100.0
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 1.5e-146 523.9 526 99.4
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 7.6e-111 405.2 554 51.4
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 1.4e-109 401.0 530 87.4
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 2.6e-87 327.0 529 81.5
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 1.0e-86 325.1 533 80.5
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 4.2e-85 319.7 512 81.8
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 1.2e-84 318.2 534 80.1
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 2.7e-84 317.0 515 82.3
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 7.9e-84 315.5 532 80.3
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 7.9e-84 315.5 606 68.8
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 1.0e-83 315.1 530 80.2
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 1.8e-83 314.3 534 79.2
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 3.9e-83 313.2 514 83.3
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 5.1e-83 312.8 512 81.1
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 6.7e-83 312.4 514 83.3
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 8.7e-83 312.0 514 83.1
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.5e-82 311.2 534 79.0
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 1.5e-82 311.2 511 82.2
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 1.9e-82 310.8 526 80.6
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 1.9e-82 310.8 511 81.8
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 2.5e-82 310.5 514 81.9
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 4.3e-82 309.7 533 80.1
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 7.4e-82 308.9 514 81.9
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 9.7e-82 308.5 512 81.1
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 1.6e-81 307.8 533 79.9
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 2.2e-81 307.4 533 78.4
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 3.7e-81 306.6 530 79.8
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 3.7e-81 306.6 512 81.2
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 8.2e-81 305.4 503 81.9
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 1.4e-80 304.7 546 68.7
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 4.1e-80 303.1 532 78.2
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 5.3e-80 302.8 521 81.4
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 5.3e-80 302.8 569 48.9
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 5.3e-80 302.8 518 80.9
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 6.9e-80 302.4 532 78.9
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 6.9e-80 302.4 534 78.5
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 1.2e-79 301.6 510 82.2
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 1.2e-79 301.6 531 79.3
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 1.5e-79 301.2 517 80.7
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 2.0e-79 300.8 506 82.2
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 2.0e-79 300.8 531 78.9
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 4.5e-79 299.7 522 80.3
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.5e-79 299.7 555 60.0
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 5.9e-79 299.3 538 77.9
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 7.7e-79 298.9 514 80.9
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 7.7e-79 298.9 522 79.9
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 1.3e-78 298.1 526 79.1
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 1.3e-78 298.1 526 77.9
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 1.7e-78 297.7 507 81.1
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 1.1e-77 295.0 507 80.9
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 1.4e-77 294.7 523 78.6
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 1.9e-77 294.3 529 78.6
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 2.5e-77 293.9 505 81.4
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 2.5e-77 293.9 521 78.3
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 2.5e-77 293.9 504 81.0
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 5.5e-77 292.7 529 78.8
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 1.6e-76 291.2 517 79.3
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 1.6e-76 291.2 507 80.7
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 2.1e-76 290.8 507 80.9
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 2.7e-76 290.4 520 78.3
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 3.6e-76 290.0 530 78.1
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 4.6e-76 289.7 526 76.8
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 4.6e-76 289.7 504 79.8
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 6.1e-76 289.3 502 80.3
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 1.4e-75 288.1 521 78.1
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 3.0e-75 287.0 521 77.9
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 3.9e-75 286.6 521 77.7
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 1.5e-74 284.6 538 76.8
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 1.5e-74 284.6 466 85.6
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 3.3e-74 283.5 523 76.9
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 7.4e-74 282.3 524 77.1
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 1.3e-73 281.6 526 76.8
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 1.3e-73 281.6 519 77.3
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 1.3e-73 281.6 526 76.8
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 1.3e-73 281.6 526 76.6
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 1.7e-73 281.2 524 76.9
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 2.2e-73 280.8 511 79.1
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 2.2e-73 280.8 529 76.4
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 3.7e-73 280.0 537 76.5
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 1.4e-72 278.1 541 77.1
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 4.1e-72 276.6 528 76.1
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 4.1e-72 276.6 540 76.3
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 1.5e-71 274.6 526 76.4
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 3.4e-71 273.5 530 75.1
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 5.9e-71 272.7 538 76.6
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 7.7e-71 272.3 513 78.2
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 1.7e-70 271.2 517 78.1
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 2.1e-68 264.2 533 74.5
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 2.6e-66 257.3 481 81.1
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 7.4e-66 255.8 526 61.8
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 2.9e-54 217.2 413 80.6
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 2.1e-52 211.1 145 70.3
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 5.2e-51 206.5 148 64.9
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 5.2e-51 206.5 501 71.3
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 1.5e-50 204.9 532 64.3
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 2.6e-50 204.1 145 65.5
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 1.1e-48 198.7 144 65.3
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 1.2e-42 178.7 487 73.1
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 5.4e-40 169.9 175 68.0
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 1.1e-37 162.2 103 71.8
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 3.4e-34 150.6 110 63.6
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 9.8e-34 149.1 142 54.9
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 1.6e-31 141.7 130 54.6
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.0e-31 141.4 172 52.3
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 3.3e-29 134.0 126 52.4
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 9.5e-29 132.5 110 61.8
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 2.9e-25 120.9 80 73.8
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 3.7e-25 120.6 88 59.1
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 3.2e-24 117.5 80 71.2
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 3.4e-18 97.4 146 38.4
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 1.1e-16 92.4 99 53.5
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 5.4e-16 90.1 117 41.9
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 3.0e-14 84.3 75 93.3
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 7.3e-13 79.7 123 35.8
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 1.7e-09 68.6 65 49.2
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 1.7e-09 68.6 121 37.2
AUR62014934 Chenopodium quinoa HOM05D008055 ORTHO05D009927 1.7e-06 58.5 32 90.6


User provided reference genes

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