Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 2313.5 1151 100.0
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1982.6 1060 94.1
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1805.0 1130 81.7
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1466.1 1105 68.5
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1444.5 1122 66.9
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1441.8 1112 67.0
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1434.5 1103 67.6
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1425.2 1077 68.5
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1422.9 1115 67.0
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1419.8 1138 64.6
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1419.4 1103 66.8
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1415.6 1106 66.6
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1410.6 1106 66.4
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1409.4 932 77.8
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1395.2 1093 65.6
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1394.8 1105 65.5
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1394.4 1049 68.6
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1391.3 1106 65.8
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1387.5 1105 66.0
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1386.3 1102 66.1
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1384.4 1105 65.1
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1384.0 1109 64.7
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1375.9 1069 66.1
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1369.4 1088 66.3
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1364.4 1077 64.8
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1364.0 1091 65.4
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1363.6 1129 64.1
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1363.2 1114 63.1
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1360.9 1117 64.9
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1360.5 1131 63.6
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1356.7 1106 63.3
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1355.5 1109 63.2
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1355.1 1111 63.1
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1353.2 1079 64.4
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1349.0 1096 63.7
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1348.2 1100 64.7
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1348.2 1105 64.5
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1342.8 1119 62.3
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1342.0 1110 62.9
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1341.6 1110 63.0
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1340.9 1111 62.6
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1338.6 1115 62.7
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1337.8 1107 64.2
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1335.9 1110 62.6
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1334.7 1129 62.9
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1334.7 1099 64.2
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1333.9 1105 63.1
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1332.8 1146 61.3
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1332.8 1122 61.9
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1330.1 1106 62.7
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1327.4 1098 63.5
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1327.0 1097 63.1
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1325.8 1113 63.9
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1324.7 1110 62.5
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1324.7 1121 62.4
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1321.6 1148 61.0
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1320.1 1110 63.6
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1318.5 1108 62.7
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1315.4 1114 61.8
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1313.5 1084 63.0
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1307.0 1102 63.2
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1306.6 1239 57.6
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1306.2 1084 62.7
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1304.7 1136 60.5
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1302.3 1097 63.1
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1297.7 1100 62.6
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1297.3 922 70.5
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1290.4 1098 61.3
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1288.1 1161 59.1
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1282.7 1085 62.8
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1281.9 1072 64.1
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1281.2 1106 61.5
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1278.8 1111 60.8
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1270.8 1147 59.3
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1265.0 1207 58.7
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1251.9 1110 59.5
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1251.5 1109 59.5
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1249.6 921 68.3
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1249.2 937 67.6
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1238.4 1075 59.3
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1238.0 920 68.2
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1236.9 888 69.9
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1230.7 1171 57.1
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1220.7 860 70.8
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1216.8 900 67.7
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 0.0e+00 1183.3 1210 54.9
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1168.7 903 65.1
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 0.0e+00 1159.4 957 63.3
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1146.0 866 65.7
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1144.8 1084 57.4
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 0.0e+00 1139.8 1085 56.4
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1130.9 997 61.6
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1130.2 1088 56.4
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1124.4 1016 60.5
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 7.8e-302 1040.8 1089 52.8
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 6.6e-301 1037.7 917 59.2
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 1.1e-298 1030.4 1112 52.7
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.5e-289 1000.0 739 69.0
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 1.8e-253 880.2 1029 47.8
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 2.3e-253 879.8 938 53.0
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 7.2e-247 858.2 645 68.4
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 1.6e-246 857.1 1014 46.4
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 4.3e-244 849.0 653 64.8
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 2.6e-233 813.1 1017 45.6
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 1.5e-215 754.2 987 43.8
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 3.9e-200 703.0 753 53.5
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 1.3e-192 677.9 497 68.2
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 7.8e-185 652.1 536 63.4
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 1.1e-151 542.0 472 61.0
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 4.5e-140 503.4 405 63.2
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 7.4e-135 486.1 1128 33.1
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 2.5e-122 444.5 379 64.1
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 2.0e-111 408.3 319 66.5
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 2.2e-110 404.8 389 53.0
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 9.2e-93 346.3 212 75.9
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.3e-75 288.5 235 64.7
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 8.1e-73 280.0 274 54.0
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.7e-68 265.0 243 58.0
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 2.1e-57 228.8 160 68.8
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 3.6e-57 228.0 174 66.1
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 9.0e-48 196.8 187 61.5
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.0e-47 195.7 181 58.0
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 1.1e-45 189.9 144 69.4
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 2.3e-43 182.2 130 74.6
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.6e-41 176.0 165 58.2
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 4.8e-41 174.5 174 62.1
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 6.2e-41 174.1 176 51.7
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 1.4e-40 172.9 178 56.7
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 7.6e-39 167.2 177 51.4
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 1.0e-35 156.8 187 50.3
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 3.1e-32 145.2 103 66.0
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 1.5e-31 142.9 107 71.0
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.0e-31 142.5 104 68.3
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.4e-31 141.7 105 66.7
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 1.6e-28 132.9 90 66.7
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.5e-26 126.3 89 67.4
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 5.7e-26 124.4 94 67.0
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 3.7e-25 121.7 94 67.0
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 2.2e-22 112.5 145 51.7
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 6.5e-22 110.9 723 23.1
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 4.6e-20 104.8 182 37.9
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 2.3e-19 102.4 337 26.4
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.7e-17 96.3 104 51.9
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 2.2e-17 95.9 181 38.1
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 4.1e-16 91.7 94 53.2
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 5.3e-16 91.3 152 41.4
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 8.5e-14 84.0 73 58.9
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 3.2e-13 82.0 71 62.0
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.2e-12 80.1 121 47.1
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 2.1e-12 79.3 309 26.5
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 6.7e-11 74.3 207 30.9
Atru.chr12.2376 Acer truncatum HOM05D001849 ORTHO05D004689 8.8e-11 73.9 95 51.6
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 2.0e-10 72.8 102 50.0
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.3e-09 70.1 77 49.4
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 2.8e-09 68.9 91 46.2
Hma1.2p1_0225F.1_g094790 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 3.7e-09 68.6 122 42.6
SMO304G0058 Selaginella moellendorffii HOM05D042764 ORTHO05D004689 3.7e-09 68.6 202 28.2
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.4e-08 66.6 63 57.1
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 5.3e-08 64.7 63 55.6
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 2.0e-07 62.8 49 65.3
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 1.7e-06 59.7 46 67.4
Hma1.2p1_0436F.1_g152830 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 5.0e-06 58.2 67 50.7


User provided reference genes

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