Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.9e-139 499.2 257 100.0
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.5e-128 463.0 261 92.0
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 8.3e-111 404.1 261 82.8
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.5e-104 383.3 257 77.4
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 2.5e-91 339.3 250 73.2
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 2.1e-90 336.3 241 72.6
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 9.8e-88 327.4 259 70.7
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 9.8e-88 327.4 246 71.5
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 8.3e-87 324.3 246 71.1
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 1.1e-86 323.9 248 71.0
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.4e-86 323.6 244 68.9
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.4e-86 323.6 246 70.7
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.9e-86 323.2 246 70.3
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.9e-86 323.2 250 71.6
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.4e-86 322.8 241 68.9
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 7.0e-86 321.2 248 69.4
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.0e-86 321.2 240 69.6
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 9.2e-86 320.9 251 68.9
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.6e-85 320.1 246 70.3
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.6e-85 320.1 246 70.3
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.7e-85 319.3 245 70.6
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.7e-85 319.3 247 68.8
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 2.7e-85 319.3 251 67.7
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 6.0e-85 318.2 241 70.1
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 6.0e-85 318.2 242 69.8
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 7.8e-85 317.8 239 67.8
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 7.8e-85 317.8 245 71.0
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.0e-84 317.4 239 69.0
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.0e-84 317.4 252 67.9
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.3e-84 317.0 246 68.7
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.3e-84 317.0 249 67.5
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.7e-84 316.6 252 66.3
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.7e-84 316.6 178 86.0
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.7e-84 316.6 226 71.2
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.3e-84 316.2 245 66.5
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 3.0e-84 315.8 251 68.9
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 6.6e-84 314.7 246 67.5
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 6.6e-84 314.7 240 70.8
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 8.6e-84 314.3 250 70.0
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 1.1e-83 313.9 255 67.5
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.1e-83 313.9 251 67.7
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.9e-83 313.2 254 66.1
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.9e-83 313.2 250 68.4
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.5e-83 312.8 249 68.3
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 2.5e-83 312.8 252 68.7
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 3.3e-83 312.4 250 67.6
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.3e-83 312.0 253 68.0
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 4.3e-83 312.0 245 68.6
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 5.6e-83 311.6 253 68.0
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.6e-83 311.6 258 68.2
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 7.3e-83 311.2 248 69.0
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.2e-82 310.5 244 67.6
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.2e-82 310.5 252 67.1
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.2e-82 310.5 254 66.9
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 1.2e-82 310.5 255 67.8
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 3.6e-82 308.9 240 68.8
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 3.6e-82 308.9 241 68.5
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 6.2e-82 308.1 243 70.0
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 6.2e-82 308.1 254 65.4
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 8.1e-82 307.8 246 69.1
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.1e-81 307.4 250 66.8
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.1e-81 307.4 260 63.5
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 1.1e-81 307.4 221 71.9
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 1.4e-81 307.0 243 70.0
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 2.3e-81 306.2 259 66.4
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 2.3e-81 306.2 249 68.3
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 2.3e-81 306.2 252 65.9
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 3.1e-81 305.8 246 65.9
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 4.0e-81 305.4 263 65.4
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 6.8e-81 304.7 252 64.7
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 6.8e-81 304.7 259 64.9
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 8.9e-81 304.3 235 68.1
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 8.9e-81 304.3 243 69.5
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.2e-80 303.9 253 66.8
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 1.2e-80 303.9 246 68.3
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 1.5e-80 303.5 252 66.7
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.5e-80 303.5 251 67.3
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 1.5e-80 303.5 218 70.6
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.5e-80 303.5 262 64.5
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 2.6e-80 302.8 257 63.8
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 2.6e-80 302.8 183 83.1
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 3.4e-80 302.4 250 66.4
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 4.4e-80 302.0 222 68.0
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 4.4e-80 302.0 244 65.6
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 5.8e-80 301.6 245 67.8
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 7.5e-80 301.2 251 67.3
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 2.2e-79 299.7 248 64.5
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 2.9e-79 299.3 258 64.7
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 2.9e-79 299.3 259 64.9
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 1.1e-78 297.4 263 65.0
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.4e-78 297.0 247 65.6
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.9e-78 296.6 256 64.1
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 5.4e-78 295.0 179 82.7
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.6e-77 293.5 254 65.0
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.3e-76 290.4 205 71.7
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.9e-75 286.6 207 72.9
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 5.6e-75 285.0 251 64.5
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 4.7e-74 282.0 217 67.7
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.7e-74 282.0 253 62.8
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 8.1e-74 281.2 236 66.1
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 3.1e-73 279.3 247 61.9
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.4e-72 275.8 252 61.5
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 5.8e-72 275.0 257 61.9
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 2.2e-71 273.1 262 59.2
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 2.9e-71 272.7 260 60.4
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 2.9e-71 272.7 262 59.2
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 4.9e-71 271.9 167 82.6
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 4.9e-71 271.9 243 62.1
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 1.4e-70 270.4 245 63.3
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.4e-70 270.4 228 65.4
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.9e-70 270.0 253 62.1
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 2.4e-70 269.6 258 58.1
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.2e-70 269.2 262 59.2
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 4.1e-70 268.9 255 59.6
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 7.1e-70 268.1 262 57.6
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 7.1e-70 268.1 262 57.6
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 3.5e-69 265.8 187 69.5
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.0e-68 264.2 243 62.6
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.0e-68 264.2 176 71.6
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.3e-68 263.8 258 58.5
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 3.3e-67 259.2 176 69.9
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 4.3e-67 258.8 216 64.4
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 5.6e-67 258.5 251 59.8
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 5.6e-67 258.5 182 69.8
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.6e-66 256.9 259 56.8
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.6e-66 256.9 251 57.0
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 4.7e-66 255.4 178 69.1
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 1.4e-65 253.8 251 60.2
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.8e-65 253.4 158 81.0
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.4e-65 253.1 251 55.4
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 2.4e-65 253.1 243 60.1
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 3.1e-65 252.7 263 56.3
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 3.4e-64 249.2 252 55.2
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 1.7e-63 246.9 177 67.8
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 8.4e-63 244.6 207 62.8
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.3e-60 237.3 252 56.0
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 6.6e-60 235.0 217 59.0
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.1e-59 234.2 150 76.7
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 3.4e-56 222.6 184 64.7
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.1e-53 213.4 216 54.2
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 5.1e-52 208.8 211 55.0
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.5e-51 207.2 133 75.2
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 1.9e-51 206.8 121 81.8
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.6e-50 203.8 211 57.3
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 8.1e-50 201.4 179 64.2
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.4e-46 190.7 122 81.1
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 9.3e-46 188.0 162 62.3
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 3.9e-44 182.6 256 49.6
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 6.7e-44 181.8 173 61.3
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.8e-42 176.4 146 68.5
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.2e-40 171.0 256 48.4
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.3e-39 167.5 123 72.4
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.6e-37 160.6 258 45.7
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-31 141.0 96 75.0
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 1.1e-27 127.9 104 59.6
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.5e-27 126.7 112 63.4
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 2.2e-26 123.6 77 80.5
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 3.7e-26 122.9 77 80.5
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 6.9e-25 118.6 76 76.3
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 2.5e-22 110.2 136 50.0
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.8e-20 104.0 125 50.4
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.5e-19 100.9 86 62.8
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 1.5e-16 90.9 205 35.1
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 5.9e-16 89.0 50 86.0
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.0e-11 73.9 196 32.7
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 1.7e-10 70.9 153 32.7
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.2e-10 70.5 107 38.3
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.4e-09 67.8 151 31.1
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 7.0e-09 65.5 55 61.8
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 9.1e-09 65.1 85 41.2
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 8.5e-07 58.5 69 46.4
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 4.2e-06 56.2 101 37.6
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 7.2e-06 55.5 138 31.2


User provided reference genes

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