Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 4.1e-289 997.7 622 100.0
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 5.5e-185 651.7 567 75.5
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 8.9e-151 538.1 569 68.9
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 6.0e-147 525.4 551 62.4
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 1.0e-138 498.0 600 63.0
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 3.6e-128 463.0 539 65.3
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 8.7e-122 441.8 569 53.8
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 7.3e-121 438.7 560 61.6
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 1.2e-118 431.4 475 60.4
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 1.1e-116 424.9 474 61.0
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 2.4e-116 423.7 579 57.0
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 7.8e-115 418.7 479 66.0
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 3.9e-114 416.4 572 60.5
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 8.7e-114 415.2 478 66.3
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 1.9e-113 414.1 583 58.7
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 4.3e-113 412.9 489 55.4
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 1.6e-112 411.0 475 67.2
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 6.2e-112 409.1 510 63.3
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 5.3e-111 406.0 570 58.2
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 6.9e-111 405.6 546 60.4
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 1.3e-109 401.4 488 66.2
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 2.9e-109 400.2 521 49.5
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 8.4e-109 398.7 563 50.6
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.4e-108 397.1 646 48.5
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 4.3e-105 386.3 580 51.6
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 1.6e-104 384.4 573 56.2
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 1.6e-104 384.4 565 58.1
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 1.2e-102 378.3 478 66.5
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 1.5e-102 377.9 550 56.2
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 1.5e-102 377.9 568 49.3
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 2.0e-102 377.5 572 49.1
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 3.8e-101 373.2 478 53.8
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 3.8e-101 373.2 523 60.8
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 3.2e-100 370.2 463 63.1
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 5.5e-100 369.4 417 69.3
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 3.5e-99 366.7 463 66.3
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 6.0e-99 365.9 565 59.6
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 2.3e-98 364.0 463 66.1
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 3.9e-98 363.2 470 53.4
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 5.1e-98 362.8 522 59.0
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 2.5e-97 360.5 573 50.1
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 2.8e-96 357.1 500 53.0
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 3.7e-96 356.7 552 48.9
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 1.8e-95 354.4 461 54.0
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 6.9e-95 352.4 465 64.7
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 9.0e-95 352.1 548 55.5
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 1.5e-94 351.3 492 52.0
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 2.0e-94 350.9 496 51.6
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 2.6e-94 350.5 571 54.3
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 4.5e-94 349.7 553 56.1
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 2.9e-93 347.1 471 51.0
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 6.5e-93 345.9 534 59.9
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 2.5e-92 344.0 566 53.9
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 7.1e-92 342.4 447 62.0
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 7.1e-92 342.4 485 60.2
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 1.8e-90 337.8 478 55.0
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 1.3e-88 331.6 447 59.7
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 8.2e-88 328.9 562 53.2
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 5.3e-87 326.2 482 48.1
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 1.2e-86 325.1 499 57.7
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 2.0e-86 324.3 556 55.6
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 4.5e-86 323.2 565 52.4
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 1.0e-85 322.0 531 53.7
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 1.0e-85 322.0 435 54.0
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 2.9e-85 320.5 569 52.4
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 5.0e-85 319.7 486 57.4
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 2.5e-84 317.4 533 58.5
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 2.3e-82 310.8 485 57.3
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 3.0e-82 310.5 584 42.3
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 2.2e-80 304.3 522 53.3
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.7e-80 303.5 558 40.7
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 8.2e-80 302.4 510 56.5
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 1.4e-79 301.6 552 52.0
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 1.4e-79 301.6 562 53.9
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 1.2e-78 298.5 526 53.4
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 2.0e-78 297.7 562 45.7
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 4.5e-78 296.6 525 51.8
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 1.0e-77 295.4 473 58.6
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 1.4e-76 291.6 434 44.5
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 4.2e-76 290.0 557 50.1
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 4.2e-76 290.0 473 51.4
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.2e-75 288.5 534 41.6
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 1.2e-75 288.5 520 52.5
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 2.1e-75 287.7 515 52.6
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 3.6e-75 287.0 527 52.4
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 7.9e-75 285.8 469 39.7
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 6.7e-74 282.7 340 54.4
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 1.1e-73 282.0 466 48.9
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.1e-73 282.0 549 45.7
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 1.1e-73 282.0 560 52.0
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 3.7e-72 276.9 516 43.6
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 6.3e-72 276.2 466 55.2
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 1.4e-71 275.0 552 50.0
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 3.1e-71 273.9 288 64.9
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 7.0e-71 272.7 508 43.7
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 1.2e-70 271.9 466 54.7
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 1.5e-70 271.6 515 54.6
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 4.2e-68 263.5 466 47.2
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 1.2e-67 261.9 485 44.5
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 1.8e-63 248.1 507 46.2
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 2.2e-61 241.1 340 51.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 8.5e-61 239.2 446 53.1
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 3.8e-53 213.8 228 50.4
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 5.2e-50 203.4 202 72.3
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 9.8e-49 199.1 304 53.0
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 1.2e-43 182.2 210 54.8
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 2.4e-39 167.9 325 44.0
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 2.9e-37 161.0 453 32.2
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 5.2e-34 150.2 138 54.3
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 5.2e-34 150.2 359 29.5
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.4e-31 141.4 96 66.7
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 7.8e-30 136.3 129 55.8
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 6.6e-29 133.3 392 36.5
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 8.9e-26 122.9 348 26.4
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 8.3e-24 116.3 155 43.9
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.1e-22 111.7 321 37.7
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.9e-20 105.1 85 63.5
AUR62019419 Chenopodium quinoa HOM05D002819 ORTHO05D015278 1.9e-20 105.1 75 61.3
AUR62035550 Chenopodium quinoa HOM05D002819 ORTHO05D015278 1.9e-20 105.1 75 61.3
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 1.5e-17 95.5 89 52.8
AUR62019417 Chenopodium quinoa HOM05D002819 ORTHO05D015278 8.3e-16 89.7 78 55.1
AUR62006077 Chenopodium quinoa HOM05D002819 ORTHO05D015278 5.4e-15 87.0 78 52.6
EL10Ac3g05261 Beta vulgaris HOM05D002819 ORTHO05D015278 4.6e-14 84.0 76 48.7
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 7.8e-14 83.2 146 34.2
Ah.07g205490 Amaranthus hybridus HOM05D002819 ORTHO05D015278 1.0e-13 82.8 77 49.4
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 8.6e-13 79.7 107 44.9
Lj1C1019T10 Lonicera japonica HOM05D005626 ORTHO05D007372 1.1e-12 79.3 73 57.5
SEGI_36936 Sequoiadendron giganteum HOM05D005626 ORTHO05D007372 1.5e-12 79.0 188 28.2
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.9e-12 78.6 146 33.6
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 4.3e-12 77.4 69 58.0
EL10Ac3g05264 Beta vulgaris HOM05D002819 ORTHO05D015278 5.6e-12 77.0 75 48.0
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 7.3e-12 76.6 148 32.4
Hund26177 Selenicereus undatus HOM05D002819 ORTHO05D015278 4.7e-11 73.9 70 50.0
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 2.4e-10 71.6 52 65.4
Hund26176 Selenicereus undatus HOM05D002819 ORTHO05D015278 8.9e-10 69.7 70 45.7
AUR62019418 Chenopodium quinoa HOM05D002819 ORTHO05D015278 1.2e-09 69.3 76 46.1
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 1.2e-09 69.3 40 85.0
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 2.2e-08 65.1 90 48.9
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 4.9e-08 63.9 137 32.1
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 1.1e-07 62.8 56 55.4
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.9e-07 62.0 45 62.2
FAN10G4199 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.9e-07 62.0 89 55.1
Ah.07g205500 Amaranthus hybridus HOM05D002819 ORTHO05D015278 6.0e-06 57.0 78 38.5


User provided reference genes

Program Settings